jgi.p|Nanoce1779_2|30934, mRNA_5584 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|30934
Unique NamemRNA_5584
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1158
Alignment locationscaffold_11:866..2642 -

Link to JBrowse

Properties
Property NameValue
TranscriptId31020
TrackFilteredModels2
ProteinId30934
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:866..2642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|30934gene_5584Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|30934mRNA_5584-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5584CDS_5584Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5584 ID=mRNA_5584|Name=jgi.p|Nanoce1779_2|30934|organism=Nannochloropsis oceanica|type=mRNA|length=1158bp
ATTACAGCAAGCAAGCCTCCACCGTGGGACACCATGCGTCGCGCATTCTC
TCTGCTTGCCCTCGGTATCACCCTCGCCCTCGCGGCGGCTCAGCCAACAG
TAATCCTCACCTTCATCAAGGCTGTCGACATGGCCAGAGCAAACAAGGAC
CAATGGAGTCTCAAGGGCTACCTCATCGACCCCGACGGGGCCATTGTCCC
GGCCATTGGTGAGGCTGGCACGACTGCAACCCTTGAAAACTCGAACGACG
TCGCAGTGAATACCGTGACCTTTGACCCGGCTGGTTGCAAATTGCTCAAC
AACGATAAGGGAATCATTTGCAAGGCTGTGAACAACCGTATGTCGCTCAA
GAGGATTAAAAGGATACCCAAGGACGCCATGATTGCTGCGCAAGCGACCC
ACAACAAGACCCGCAGCGCACCATTTTATTACAGAGTCTCGGGTGTTTTC
CGTCATCAGGAGTTTAACGTCACTGTATCGACACCTCTGACAGCTGCCTT
CGCCATTGATGGAGCAAGCGAACTCTCTGCCACCAACACGAAGTGCACTG
AGAAGGATGGAAAGAGGGCCAGCAAGTACCTCTGCATGACGGGAGCACCA
GCACCGTCGCCAACACCAGTACCATCGCCAGCCGGATGGACGGAGCAAAC
CGATTCTGGTTCACGCAGCTGGCGATCTATCGCGTCCTCGTCGGATGGCA
CGAAACTTGCCGCTGTCGTGAATGGAGGCTCAATCTATACGTCGACCAAC
TCGGGCATCACCTGGACCGAGCGAACCGGTCCTGGTTCACGTAGTTGGTA
CTCGATCGCGTCGTCGTCGGATGGCACGAAACTTGCCGCCGTCGTGAATG
GAGGCACCATCTGGACGTCGACCGACTCGGGCGCTATCTGGACGGAGCGA
ACCGGTCCTGGCTCACGTAATTGGCAAGCGATCGCGTCGTCGTCGGATGG
CACGGTACGTGCGTGAATGCAGATCATCCCGAAGGGTGCACCATGCTATT
ATCCTGGATAACGGTCATATCGTGAATGCATGTTTGTTCAAGGATCGCCA
AATGATGCTCGATCTTACGCATCATGGCGGACTATTCATCACATCATGCA
CAGAAACTTGCCGCCGTGGTGAATGGAGACACCATCTGGACGTCGACCAA
CTCGGGCG
back to top

protein sequence of jgi.p|Nanoce1779_2|30934

>mRNA_5584-protein ID=mRNA_5584-protein|Name=jgi.p|Nanoce1779_2|30934|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MRRAFSLLALGITLALAAAQPTVILTFIKAVDMARANKDQWSLKGYLIDP
DGAIVPAIGEAGTTATLENSNDVAVNTVTFDPAGCKLLNNDKGIICKAVN
NRMSLKRIKRIPKDAMIAAQATHNKTRSAPFYYRVSGVFRHQEFNVTVST
PLTAAFAIDGASELSATNTKCTEKDGKRASKYLCMTGAPAPSPTPVPSPA
GWTEQTDSGSRSWRSIASSSDGTKLAAVVNGGSIYTSTNSGITWTERTGP
GSRSWYSIASSSDGTKLAAVVNGGTIWTSTDSGAIWTERTGPGSRNWQAI
ASSSDGTVRA*
back to top

mRNA from alignment at scaffold_11:866..2642-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5584 ID=mRNA_5584|Name=jgi.p|Nanoce1779_2|30934|organism=Nannochloropsis oceanica|type=mRNA|length=1777bp|location=Sequence derived from alignment at scaffold_11:866..2642- (Nannochloropsis oceanica)
ATTACAGCAAGCAAGCCTCCACCGTGGGACACCATGCGTCGCGCATTCTC
TCTGCTTGCCCTCGGTATCACCCTCGCCCTCGCGGCGGCTCAGCCAACAG
TAATCCTCACCTTCATCAAGGCTGTCGACATGGCCAGAGCAAACAAGGAC
CAATGGAGTCTCAAGGGCTACCTCATCGACCCCGACGGGGCCATTGTCCC
GGCCATTGGTGAGGCTGGCACGACTGCAACCCTTGAAAACTCGAACGACG
TCGCAGTGAATACCGTGACCTTTGACCCGGCTGGTTGCAAATTGCTCAAC
AACGATAAGGGAATCATTTGCAAGGCTGTGAACAACCGTATGTCGCTCAA
GAGGATTAAAAGGATACCCAAGGACGCCATGATTGCTGCGCAAGCGACCC
ACAACAAGACCCGCAGCGCACCATTTTATTACAGAGTCTCGGGTGTTTTC
CGTCATCAGGAGTTTAACGTCACTGTATCGACACCTCTGACAGCTGCCTT
CGCCATTGATGGAGCAAGCGAACTCTCTGCCACCAACACGAAGTGCACTG
AGAAGGATGGAAAGAGGGCCAGCAAGTACCTCTGCATGACGGGAGCACCA
GCACCGTCGCCAACACCAGTACCATCGCCAGCCGGATGGACGGAGCAAAC
CGATTCTGGTTCACGCAGCTGGCGATCTATCGCGTCCTCGTCGGATGGCA
CGGTACGTGTTAGAATACGGGCCATTACGGAAGGTGCACTGACATTACGA
TAGCGGTCGATAGTCCTGTTGATGTAAGTCATAGTCGTAGTCATGTATAA
TTCCCACCGAGGACGACTATGACGAATAATAATCGTGGGCCTTTCCCCTT
AAGACTATGACTATTTTTAGTCGTGCGTCATGCATGTTTTCTATCAAGAC
TACGACTACTTTTAGTTATAGGGAGGAGGCGGAGGAGGGGGGAGGAGGCG
GAGGAGGAGAGGGGAGGAAGGGGAGGAGGAGGATGGGTGAAGGAGGGGGG
GAGAAGGAGGGGGGCGGGAGGAGGGCGGGAGAAGGAGGAGGGCGGGAGGG
GGGAGGCATGCCACTGTCCTGGATAGTGGTCACACGTGAATGCATGTCTT
ATCAAGGGTCGCCAAGTGATGCTCGATCTGACGTACTATGGTCGGCTACC
CATCCCACCATGCACAGAAACTTGCCGCTGTCGTGAATGGAGGCTCAATC
TATACGTCGACCAACTCGGGCATCACCTGGACCGAGCGAACCGGTCCTGG
TTCACGTAGTTGGTACTCGATCGCGTCGTCGTCGGATGGCACGGTACGTG
CGTGAATTGCGGATCATCGCGAGAGGTGCACCCATGCCACTGTCCCGAAT
GTCCTGGATTACATCGTGAATGCGTGTCTTGTCAAGAATCGCCAAGTGAT
GCTCGATCTGACGTACTATGGTCGGCTACCCATCCCACCATGCACAGAAA
CTTGCCGCCGTCGTGAATGGAGGCACCATCTGGACGTCGACCGACTCGGG
CGCTATCTGGACGGAGCGAACCGGTCCTGGCTCACGTAATTGGCAAGCGA
TCGCGTCGTCGTCGGATGGCACGGTACGTGCGTGAATGCAGATCATCCCG
AAGGGTGCACCATGCTATTATCCTGGATAACGGTCATATCGTGAATGCAT
GTTTGTTCAAGGATCGCCAAATGATGCTCGATCTTACGCATCATGGCGGA
CTATTCATCACATCATGCACAGAAACTTGCCGCCGTGGTGAATGGAGACA
CCATCTGGACGTCGACCAACTCGGGCG
back to top

Coding sequence (CDS) from alignment at scaffold_11:866..2642-

>mRNA_5584 ID=mRNA_5584|Name=jgi.p|Nanoce1779_2|30934|organism=Nannochloropsis oceanica|type=CDS|length=2799bp|location=Sequence derived from alignment at scaffold_11:866..2642- (Nannochloropsis oceanica)
AAACTTGCCGCCGTCGTGAATGGAGGCACCATCTGGACGTCGACCGACTC
GGGCGCTATCTGGACGGAGCGAACCGGTCCTGGCTCACGTAATTGGCAAG
CGATCGCGTCGTCGTCGGATGGCACGGTACGTGCGTGAAAACTTGCCGCT
GTCGTGAATGGAGGCTCAATCTATACGTCGACCAACTCGGGCATCACCTG
GACCGAGCGAACCGGTCCTGGTTCACGTAGTTGGTACTCGATCGCGTCGT
CGTCGGATGGCACGATGCGTCGCGCATTCTCTCTGCTTGCCCTCGGTATC
ACCCTCGCCCTCGCGGCGGCTCAGCCAACAGTAATCCTCACCTTCATCAA
GGCTGTCGACATGGCCAGAGCAAACAAGGACCAATGGAGTCTCAAGGGCT
ACCTCATCGACCCCGACGGGGCCATTGTCCCGGCCATTGGTGAGGCTGGC
ACGACTGCAACCCTTGAAAACTCGAACGACGTCGCAGTGAATACCGTGAC
CTTTGACCCGGCTGGTTGCAAATTGCTCAACAACGATAAGGGAATCATTT
GCAAGGCTGTGAACAACCGTATGTCGCTCAAGAGGATTAAAAGGATACCC
AAGGACGCCATGATTGCTGCGCAAGCGACCCACAACAAGACCCGCAGCGC
ACCATTTTATTACAGAGTCTCGGGTGTTTTCCGTCATCAGGAGTTTAACG
TCACTGTATCGACACCTCTGACAGCTGCCTTCGCCATTGATGGAGCAAGC
GAACTCTCTGCCACCAACACGAAGTGCACTGAGAAGGATGGAAAGAGGGC
CAGCAAGTACCTCTGCATGACGGGAGCACCAGCACCGTCGCCAACACCAG
TACCATCGCCAGCCGGATGGACGGAGCAAACCGATTCTGGTTCACGCAGC
TGGCGATCTATCGCGTCCTCGTCGGATGGCACGAAACTTGCCGCCGTCGT
GAATGGAGGCACCATCTGGACGTCGACCGACTCGGGCGCTATCTGGACGG
AGCGAACCGGTCCTGGCTCACGTAATTGGCAAGCGATCGCGTCGTCGTCG
GATGGCACGGTACGTGCGTGAAAACTTGCCGCTGTCGTGAATGGAGGCTC
AATCTATACGTCGACCAACTCGGGCATCACCTGGACCGAGCGAACCGGTC
CTGGTTCACGTAGTTGGTACTCGATCGCGTCGTCGTCGGATGGCACGATG
CGTCGCGCATTCTCTCTGCTTGCCCTCGGTATCACCCTCGCCCTCGCGGC
GGCTCAGCCAACAGTAATCCTCACCTTCATCAAGGCTGTCGACATGGCCA
GAGCAAACAAGGACCAATGGAGTCTCAAGGGCTACCTCATCGACCCCGAC
GGGGCCATTGTCCCGGCCATTGGTGAGGCTGGCACGACTGCAACCCTTGA
AAACTCGAACGACGTCGCAGTGAATACCGTGACCTTTGACCCGGCTGGTT
GCAAATTGCTCAACAACGATAAGGGAATCATTTGCAAGGCTGTGAACAAC
CGTATGTCGCTCAAGAGGATTAAAAGGATACCCAAGGACGCCATGATTGC
TGCGCAAGCGACCCACAACAAGACCCGCAGCGCACCATTTTATTACAGAG
TCTCGGGTGTTTTCCGTCATCAGGAGTTTAACGTCACTGTATCGACACCT
CTGACAGCTGCCTTCGCCATTGATGGAGCAAGCGAACTCTCTGCCACCAA
CACGAAGTGCACTGAGAAGGATGGAAAGAGGGCCAGCAAGTACCTCTGCA
TGACGGGAGCACCAGCACCGTCGCCAACACCAGTACCATCGCCAGCCGGA
TGGACGGAGCAAACCGATTCTGGTTCACGCAGCTGGCGATCTATCGCGTC
CTCGTCGGATGGCACGAAACTTGCCGCCGTCGTGAATGGAGGCACCATCT
GGACGTCGACCGACTCGGGCGCTATCTGGACGGAGCGAACCGGTCCTGGC
TCACGTAATTGGCAAGCGATCGCGTCGTCGTCGGATGGCACGGTACGTGC
GTGAAAACTTGCCGCTGTCGTGAATGGAGGCTCAATCTATACGTCGACCA
ACTCGGGCATCACCTGGACCGAGCGAACCGGTCCTGGTTCACGTAGTTGG
TACTCGATCGCGTCGTCGTCGGATGGCACGATGCGTCGCGCATTCTCTCT
GCTTGCCCTCGGTATCACCCTCGCCCTCGCGGCGGCTCAGCCAACAGTAA
TCCTCACCTTCATCAAGGCTGTCGACATGGCCAGAGCAAACAAGGACCAA
TGGAGTCTCAAGGGCTACCTCATCGACCCCGACGGGGCCATTGTCCCGGC
CATTGGTGAGGCTGGCACGACTGCAACCCTTGAAAACTCGAACGACGTCG
CAGTGAATACCGTGACCTTTGACCCGGCTGGTTGCAAATTGCTCAACAAC
GATAAGGGAATCATTTGCAAGGCTGTGAACAACCGTATGTCGCTCAAGAG
GATTAAAAGGATACCCAAGGACGCCATGATTGCTGCGCAAGCGACCCACA
ACAAGACCCGCAGCGCACCATTTTATTACAGAGTCTCGGGTGTTTTCCGT
CATCAGGAGTTTAACGTCACTGTATCGACACCTCTGACAGCTGCCTTCGC
CATTGATGGAGCAAGCGAACTCTCTGCCACCAACACGAAGTGCACTGAGA
AGGATGGAAAGAGGGCCAGCAAGTACCTCTGCATGACGGGAGCACCAGCA
CCGTCGCCAACACCAGTACCATCGCCAGCCGGATGGACGGAGCAAACCGA
TTCTGGTTCACGCAGCTGGCGATCTATCGCGTCCTCGTCGGATGGCACG
back to top
Synonyms
Publications