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Properties
Property Name | Value |
TranscriptId | 529560 |
Track | FilteredModels2 |
ProteinId | 529474 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_13 | supercontig | scaffold_13:835861..837828 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5583 ID=mRNA_5583|Name=jgi.p|Nanoce1779_2|529474|organism=Nannochloropsis oceanica|type=mRNA|length=1020bp ATGAGCCCTACAACAGCACCGACGCTAAGTCCCACGACAGCACCGACAAA GAGCCCTACGACAGCACCAACACAAAGCCCCACGACAGCACCGACACAGA GCCCCACGACAGCACCGACACCAGCACCAGGCGTCACGTGGACGCAGCAA AACAACAGTGATATACGTGACTGGTTTTCCATAACATCTTCATCCGATGG CACGAAACTTGCCGCCGTGGTGCAAGGAGGCTATATCTATACGTCGACTG ACACGGGTGTTACCTGGACGCAGCAAAACAACAGTGACTCACGCAACTGG TTATCGATCGCGTCCTCATCTGATGGCACGAAACTTGCCGCCGTGGTGCA AGGAGGCTATATCTATACGTCGACTGACACGGGTGTTACCTGGACGCAGC AAAACAACAGTGACTCACGTAGCTGGATTTCTATTGCGTCCTCATCCGAT GGCACGAAACTTGCCGCCGTCGTACTTGGAGGCTTCATCTATACGTCCAC CGACTCGGGCGTCACCTGGACGGAGCGAGCCGACAGCGGTTCACGTTTGT GGTATTCGATCGCATCCTCGTCCAATGGCACGAAACTTGCTGCTGGAGTT AATTTTGGAGGCTTCATCTACACATCGACCGACTCGGGCCTTACCTGGAT ACAGCAAAGCAGCAGTGGTTCGGAAAACTGGCATTCAGTTGCGTCCTCAT CGGATGGCACGAAACTTGCTGCTGCGGTAGATGGCGGCTACATTTATACG TCGACCGACTCGGGCGTTGCCTGGACGCAGCAAAGCAGTGGTGAACGTGG CTGGCATTCGATCGCCTCCTCATCCGATGGCACGAAACTTGCCGCCGTGG TAGATGGAGGCTACACCTATACGTCGACCGACTCGGGCGTCACCTGGACT GAGCGAAACAGCAGTGGTGCACGTGATTGGCAGTCGATTGTATCCTCATC CGACGGCACGGTACGTGATCTAATGCACGGCATTATGCAAGGTGCACGAC ACCATGGTTGTAAATGCTAG back to topprotein sequence of jgi.p|Nanoce1779_2|529474 >mRNA_5583-protein ID=mRNA_5583-protein|Name=jgi.p|Nanoce1779_2|529474|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp MSPTTAPTLSPTTAPTKSPTTAPTQSPTTAPTQSPTTAPTPAPGVTWTQQ NNSDIRDWFSITSSSDGTKLAAVVQGGYIYTSTDTGVTWTQQNNSDSRNW LSIASSSDGTKLAAVVQGGYIYTSTDTGVTWTQQNNSDSRSWISIASSSD GTKLAAVVLGGFIYTSTDSGVTWTERADSGSRLWYSIASSSNGTKLAAGV NFGGFIYTSTDSGLTWIQQSSSGSENWHSVASSSDGTKLAAAVDGGYIYT STDSGVAWTQQSSGERGWHSIASSSDGTKLAAVVDGGYTYTSTDSGVTWT ERNSSGARDWQSIVSSSDGTVRDLMHGIMQGARHHGCKC* back to topmRNA from alignment at scaffold_13:835861..837828+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5583 ID=mRNA_5583|Name=jgi.p|Nanoce1779_2|529474|organism=Nannochloropsis oceanica|type=mRNA|length=1968bp|location=Sequence derived from alignment at scaffold_13:835861..837828+ (Nannochloropsis oceanica) ATGAGCCCTACAACAGCACCGACGCTAAGTCCCACGACAGCACCGACAAA
GAGCCCTACGACAGCACCAACACAAAGCCCCACGACAGCACCGACACAGA
GCCCCACGACAGCACCGACACCAGCACCAGGCGTCACGTGGACGCAGCAA
AACAACAGTGATATACGTGACTGGTTTTCCATAACATCTTCATCCGATGG
CACGGTACGTATTTGAATGCAGGACATTATGCAAGATGCAGGACATCGAC
GTCGTAAATATAAGTTGCATGGTGTGTGGATATCTCGTCATAGGTCGCAA
TTTCGTACTCAACTTCACGCGCCGTATTCAACTGCGCATCCAACTGCCCA
CAGAAACTTGCCGCCGTGGTGCAAGGAGGCTATATCTATACGTCGACTGA
CACGGGTGTTACCTGGACGCAGCAAAACAACAGTGACTCACGCAACTGGT
TATCGATCGCGTCCTCATCTGATGGCACGGTACGTATTTGAATGCAGGAC
ATTATGCAAGATGCAGGACATCGACGTCGTAAATATAAGTTGCATGGTGT
GTGGATATCTCGTCATAGGTCGCAATTTCGTACTCAACTTCAACTGCGCA
TCCAACTGCCCACAGAAACTTGCCGCCGTGGTGCAAGGAGGCTATATCTA
TACGTCGACTGACACGGGTGTTACCTGGACGCAGCAAAACAACAGTGACT
CACGTAGCTGGATTTCTATTGCGTCCTCATCCGATGGCACGGTACGTATT
TGAATGCAGGACATTACACAAGATGTACGACGATAGAGTTCTGAAAGCTA
GTGGCTCGATGTCACGTCAAGGTTCGTGATGTCTTGTTTGATCTCAAATA
TCGAATTCAATCGACTATCCAACTCCCCACAGAAACTTGCCGCCGTCGTA
CTTGGAGGCTTCATCTATACGTCCACCGACTCGGGCGTCACCTGGACGGA
GCGAGCCGACAGCGGTTCACGTTTGTGGTATTCGATCGCATCCTCGTCCA
ATGGCACGGTAGGTGTATTGCAGGACAATAGACATGATGCATGACGTAAT
CGGTGTGAATGCTATTCGCAGAGTGTGGCAACTTCTTGTCGCGGTGTATT
TCTCCATCTCATGCGCTCGACTACCTACTCAACTACCCAGAAACTTGCTG
CTGGAGTTAATTTTGGAGGCTTCATCTACACATCGACCGACTCGGGCCTT
ACCTGGATACAGCAAAGCAGCAGTGGTTCGGAAAACTGGCATTCAGTTGC
GTCCTCATCGGATGGCACGGTGCGTGCACGAATGTGGGGCATCTTTCAAG
ATGCACGACACGTCTTTGTGAAAGCTGGTTGTGTGATAAATGTGTCTATT
TTTTTTCAAGGGTCGTAAAGTATAGCTTAATCTCATCCACGTGCGCTACT
TTCAATGATCAACAGAAACTTGCTGCTGCGGTAGATGGCGGCTACATTTA
TACGTCGACCGACTCGGGCGTTGCCTGGACGCAGCAAAGCAGTGGTGAAC
GTGGCTGGCATTCGATCGCCTCCTCATCCGATGGCACGGTACGTGTTCGA
ACACAGGTCATGATAAAATGTGCACGACGTCACCATTAGGAATTCAGATT
ACATCATGAATGAATGTCTCGTCAAGAATTTCGACGTAAGGCTCTGTTAA
TAATGATAAAATGTGCACGACGTCACCATTAAAAATTCAGATTACGTTAT
GAATGAATATCTCGTCAAGACTTCCGACGTAAGGCTCAATCTGACGCACG
TCACGACCCACTGCTTACGCAATCACACACAGAAACTTGCCGCCGTGGTA
GATGGAGGCTACACCTATACGTCGACCGACTCGGGCGTCACCTGGACTGA
GCGAAACAGCAGTGGTGCACGTGATTGGCAGTCGATTGTATCCTCATCCG
ACGGCACGGTACGTGATCTAATGCACGGCATTATGCAAGGTGCACGACAC
CATGGTTGTAAATGCTAG back to topCoding sequence (CDS) from alignment at scaffold_13:835861..837828+ >mRNA_5583 ID=mRNA_5583|Name=jgi.p|Nanoce1779_2|529474|organism=Nannochloropsis oceanica|type=CDS|length=7140bp|location=Sequence derived from alignment at scaffold_13:835861..837828+ (Nannochloropsis oceanica) ATGAGCCCTACAACAGCACCGACGCTAAGTCCCACGACAGCACCGACAAA GAGCCCTACGACAGCACCAACACAAAGCCCCACGACAGCACCGACACAGA GCCCCACGACAGCACCGACACCAGCACCAGGCGTCACGTGGACGCAGCAA AACAACAGTGATATACGTGACTGGTTTTCCATAACATCTTCATCCGATGG CACGAAACTTGCCGCCGTGGTGCAAGGAGGCTATATCTATACGTCGACTG ACACGGGTGTTACCTGGACGCAGCAAAACAACAGTGACTCACGCAACTGG TTATCGATCGCGTCCTCATCTGATGGCACGAAACTTGCCGCCGTGGTGCA AGGAGGCTATATCTATACGTCGACTGACACGGGTGTTACCTGGACGCAGC AAAACAACAGTGACTCACGTAGCTGGATTTCTATTGCGTCCTCATCCGAT GGCACGAAACTTGCCGCCGTCGTACTTGGAGGCTTCATCTATACGTCCAC CGACTCGGGCGTCACCTGGACGGAGCGAGCCGACAGCGGTTCACGTTTGT GGTATTCGATCGCATCCTCGTCCAATGGCACGAAACTTGCTGCTGGAGTT AATTTTGGAGGCTTCATCTACACATCGACCGACTCGGGCCTTACCTGGAT ACAGCAAAGCAGCAGTGGTTCGGAAAACTGGCATTCAGTTGCGTCCTCAT CGGATGGCACGAAACTTGCTGCTGCGGTAGATGGCGGCTACATTTATACG TCGACCGACTCGGGCGTTGCCTGGACGCAGCAAAGCAGTGGTGAACGTGG CTGGCATTCGATCGCCTCCTCATCCGATGGCACGAAACTTGCCGCCGTGG TAGATGGAGGCTACACCTATACGTCGACCGACTCGGGCGTCACCTGGACT GAGCGAAACAGCAGTGGTGCACGTGATTGGCAGTCGATTGTATCCTCATC CGACGGCACGGTACGTGATCTAATGCACGGCATTATGCAAGGTGCACGAC ACCATGGTTGTAAATGCTAGATGAGCCCTACAACAGCACCGACGCTAAGT CCCACGACAGCACCGACAAAGAGCCCTACGACAGCACCAACACAAAGCCC CACGACAGCACCGACACAGAGCCCCACGACAGCACCGACACCAGCACCAG GCGTCACGTGGACGCAGCAAAACAACAGTGATATACGTGACTGGTTTTCC ATAACATCTTCATCCGATGGCACGAAACTTGCCGCCGTGGTGCAAGGAGG CTATATCTATACGTCGACTGACACGGGTGTTACCTGGACGCAGCAAAACA ACAGTGACTCACGCAACTGGTTATCGATCGCGTCCTCATCTGATGGCACG AAACTTGCCGCCGTGGTGCAAGGAGGCTATATCTATACGTCGACTGACAC GGGTGTTACCTGGACGCAGCAAAACAACAGTGACTCACGTAGCTGGATTT CTATTGCGTCCTCATCCGATGGCACGAAACTTGCCGCCGTCGTACTTGGA GGCTTCATCTATACGTCCACCGACTCGGGCGTCACCTGGACGGAGCGAGC CGACAGCGGTTCACGTTTGTGGTATTCGATCGCATCCTCGTCCAATGGCA CGAAACTTGCTGCTGGAGTTAATTTTGGAGGCTTCATCTACACATCGACC GACTCGGGCCTTACCTGGATACAGCAAAGCAGCAGTGGTTCGGAAAACTG GCATTCAGTTGCGTCCTCATCGGATGGCACGAAACTTGCTGCTGCGGTAG ATGGCGGCTACATTTATACGTCGACCGACTCGGGCGTTGCCTGGACGCAG CAAAGCAGTGGTGAACGTGGCTGGCATTCGATCGCCTCCTCATCCGATGG CACGAAACTTGCCGCCGTGGTAGATGGAGGCTACACCTATACGTCGACCG ACTCGGGCGTCACCTGGACTGAGCGAAACAGCAGTGGTGCACGTGATTGG CAGTCGATTGTATCCTCATCCGACGGCACGGTACGTGATCTAATGCACGG CATTATGCAAGGTGCACGACACCATGGTTGTAAATGCTAGATGAGCCCTA CAACAGCACCGACGCTAAGTCCCACGACAGCACCGACAAAGAGCCCTACG ACAGCACCAACACAAAGCCCCACGACAGCACCGACACAGAGCCCCACGAC AGCACCGACACCAGCACCAGGCGTCACGTGGACGCAGCAAAACAACAGTG ATATACGTGACTGGTTTTCCATAACATCTTCATCCGATGGCACGAAACTT GCCGCCGTGGTGCAAGGAGGCTATATCTATACGTCGACTGACACGGGTGT TACCTGGACGCAGCAAAACAACAGTGACTCACGCAACTGGTTATCGATCG CGTCCTCATCTGATGGCACGAAACTTGCCGCCGTGGTGCAAGGAGGCTAT ATCTATACGTCGACTGACACGGGTGTTACCTGGACGCAGCAAAACAACAG TGACTCACGTAGCTGGATTTCTATTGCGTCCTCATCCGATGGCACGAAAC TTGCCGCCGTCGTACTTGGAGGCTTCATCTATACGTCCACCGACTCGGGC GTCACCTGGACGGAGCGAGCCGACAGCGGTTCACGTTTGTGGTATTCGAT CGCATCCTCGTCCAATGGCACGAAACTTGCTGCTGGAGTTAATTTTGGAG GCTTCATCTACACATCGACCGACTCGGGCCTTACCTGGATACAGCAAAGC AGCAGTGGTTCGGAAAACTGGCATTCAGTTGCGTCCTCATCGGATGGCAC GAAACTTGCTGCTGCGGTAGATGGCGGCTACATTTATACGTCGACCGACT CGGGCGTTGCCTGGACGCAGCAAAGCAGTGGTGAACGTGGCTGGCATTCG ATCGCCTCCTCATCCGATGGCACGAAACTTGCCGCCGTGGTAGATGGAGG CTACACCTATACGTCGACCGACTCGGGCGTCACCTGGACTGAGCGAAACA GCAGTGGTGCACGTGATTGGCAGTCGATTGTATCCTCATCCGACGGCACG GTACGTGATCTAATGCACGGCATTATGCAAGGTGCACGACACCATGGTTG TAAATGCTAGATGAGCCCTACAACAGCACCGACGCTAAGTCCCACGACAG CACCGACAAAGAGCCCTACGACAGCACCAACACAAAGCCCCACGACAGCA CCGACACAGAGCCCCACGACAGCACCGACACCAGCACCAGGCGTCACGTG GACGCAGCAAAACAACAGTGATATACGTGACTGGTTTTCCATAACATCTT CATCCGATGGCACGAAACTTGCCGCCGTGGTGCAAGGAGGCTATATCTAT ACGTCGACTGACACGGGTGTTACCTGGACGCAGCAAAACAACAGTGACTC ACGCAACTGGTTATCGATCGCGTCCTCATCTGATGGCACGAAACTTGCCG CCGTGGTGCAAGGAGGCTATATCTATACGTCGACTGACACGGGTGTTACC TGGACGCAGCAAAACAACAGTGACTCACGTAGCTGGATTTCTATTGCGTC CTCATCCGATGGCACGAAACTTGCCGCCGTCGTACTTGGAGGCTTCATCT ATACGTCCACCGACTCGGGCGTCACCTGGACGGAGCGAGCCGACAGCGGT TCACGTTTGTGGTATTCGATCGCATCCTCGTCCAATGGCACGAAACTTGC TGCTGGAGTTAATTTTGGAGGCTTCATCTACACATCGACCGACTCGGGCC TTACCTGGATACAGCAAAGCAGCAGTGGTTCGGAAAACTGGCATTCAGTT GCGTCCTCATCGGATGGCACGAAACTTGCTGCTGCGGTAGATGGCGGCTA CATTTATACGTCGACCGACTCGGGCGTTGCCTGGACGCAGCAAAGCAGTG GTGAACGTGGCTGGCATTCGATCGCCTCCTCATCCGATGGCACGAAACTT GCCGCCGTGGTAGATGGAGGCTACACCTATACGTCGACCGACTCGGGCGT CACCTGGACTGAGCGAAACAGCAGTGGTGCACGTGATTGGCAGTCGATTG TATCCTCATCCGACGGCACGGTACGTGATCTAATGCACGGCATTATGCAA GGTGCACGACACCATGGTTGTAAATGCTAGATGAGCCCTACAACAGCACC GACGCTAAGTCCCACGACAGCACCGACAAAGAGCCCTACGACAGCACCAA CACAAAGCCCCACGACAGCACCGACACAGAGCCCCACGACAGCACCGACA CCAGCACCAGGCGTCACGTGGACGCAGCAAAACAACAGTGATATACGTGA CTGGTTTTCCATAACATCTTCATCCGATGGCACGAAACTTGCCGCCGTGG TGCAAGGAGGCTATATCTATACGTCGACTGACACGGGTGTTACCTGGACG CAGCAAAACAACAGTGACTCACGCAACTGGTTATCGATCGCGTCCTCATC TGATGGCACGAAACTTGCCGCCGTGGTGCAAGGAGGCTATATCTATACGT CGACTGACACGGGTGTTACCTGGACGCAGCAAAACAACAGTGACTCACGT AGCTGGATTTCTATTGCGTCCTCATCCGATGGCACGAAACTTGCCGCCGT CGTACTTGGAGGCTTCATCTATACGTCCACCGACTCGGGCGTCACCTGGA CGGAGCGAGCCGACAGCGGTTCACGTTTGTGGTATTCGATCGCATCCTCG TCCAATGGCACGAAACTTGCTGCTGGAGTTAATTTTGGAGGCTTCATCTA CACATCGACCGACTCGGGCCTTACCTGGATACAGCAAAGCAGCAGTGGTT CGGAAAACTGGCATTCAGTTGCGTCCTCATCGGATGGCACGAAACTTGCT GCTGCGGTAGATGGCGGCTACATTTATACGTCGACCGACTCGGGCGTTGC CTGGACGCAGCAAAGCAGTGGTGAACGTGGCTGGCATTCGATCGCCTCCT CATCCGATGGCACGAAACTTGCCGCCGTGGTAGATGGAGGCTACACCTAT ACGTCGACCGACTCGGGCGTCACCTGGACTGAGCGAAACAGCAGTGGTGC ACGTGATTGGCAGTCGATTGTATCCTCATCCGACGGCACGGTACGTGATC TAATGCACGGCATTATGCAAGGTGCACGACACCATGGTTGTAAATGCTAG ATGAGCCCTACAACAGCACCGACGCTAAGTCCCACGACAGCACCGACAAA GAGCCCTACGACAGCACCAACACAAAGCCCCACGACAGCACCGACACAGA GCCCCACGACAGCACCGACACCAGCACCAGGCGTCACGTGGACGCAGCAA AACAACAGTGATATACGTGACTGGTTTTCCATAACATCTTCATCCGATGG CACGAAACTTGCCGCCGTGGTGCAAGGAGGCTATATCTATACGTCGACTG ACACGGGTGTTACCTGGACGCAGCAAAACAACAGTGACTCACGCAACTGG TTATCGATCGCGTCCTCATCTGATGGCACGAAACTTGCCGCCGTGGTGCA AGGAGGCTATATCTATACGTCGACTGACACGGGTGTTACCTGGACGCAGC AAAACAACAGTGACTCACGTAGCTGGATTTCTATTGCGTCCTCATCCGAT GGCACGAAACTTGCCGCCGTCGTACTTGGAGGCTTCATCTATACGTCCAC CGACTCGGGCGTCACCTGGACGGAGCGAGCCGACAGCGGTTCACGTTTGT GGTATTCGATCGCATCCTCGTCCAATGGCACGAAACTTGCTGCTGGAGTT AATTTTGGAGGCTTCATCTACACATCGACCGACTCGGGCCTTACCTGGAT ACAGCAAAGCAGCAGTGGTTCGGAAAACTGGCATTCAGTTGCGTCCTCAT CGGATGGCACGAAACTTGCTGCTGCGGTAGATGGCGGCTACATTTATACG TCGACCGACTCGGGCGTTGCCTGGACGCAGCAAAGCAGTGGTGAACGTGG CTGGCATTCGATCGCCTCCTCATCCGATGGCACGAAACTTGCCGCCGTGG TAGATGGAGGCTACACCTATACGTCGACCGACTCGGGCGTCACCTGGACT GAGCGAAACAGCAGTGGTGCACGTGATTGGCAGTCGATTGTATCCTCATC CGACGGCACGGTACGTGATCTAATGCACGGCATTATGCAAGGTGCACGAC ACCATGGTTGTAAATGCTAGATGAGCCCTACAACAGCACCGACGCTAAGT CCCACGACAGCACCGACAAAGAGCCCTACGACAGCACCAACACAAAGCCC CACGACAGCACCGACACAGAGCCCCACGACAGCACCGACACCAGCACCAG GCGTCACGTGGACGCAGCAAAACAACAGTGATATACGTGACTGGTTTTCC ATAACATCTTCATCCGATGGCACGAAACTTGCCGCCGTGGTGCAAGGAGG CTATATCTATACGTCGACTGACACGGGTGTTACCTGGACGCAGCAAAACA ACAGTGACTCACGCAACTGGTTATCGATCGCGTCCTCATCTGATGGCACG AAACTTGCCGCCGTGGTGCAAGGAGGCTATATCTATACGTCGACTGACAC GGGTGTTACCTGGACGCAGCAAAACAACAGTGACTCACGTAGCTGGATTT CTATTGCGTCCTCATCCGATGGCACGAAACTTGCCGCCGTCGTACTTGGA GGCTTCATCTATACGTCCACCGACTCGGGCGTCACCTGGACGGAGCGAGC CGACAGCGGTTCACGTTTGTGGTATTCGATCGCATCCTCGTCCAATGGCA CGAAACTTGCTGCTGGAGTTAATTTTGGAGGCTTCATCTACACATCGACC GACTCGGGCCTTACCTGGATACAGCAAAGCAGCAGTGGTTCGGAAAACTG GCATTCAGTTGCGTCCTCATCGGATGGCACGAAACTTGCTGCTGCGGTAG ATGGCGGCTACATTTATACGTCGACCGACTCGGGCGTTGCCTGGACGCAG CAAAGCAGTGGTGAACGTGGCTGGCATTCGATCGCCTCCTCATCCGATGG CACGAAACTTGCCGCCGTGGTAGATGGAGGCTACACCTATACGTCGACCG ACTCGGGCGTCACCTGGACTGAGCGAAACAGCAGTGGTGCACGTGATTGG CAGTCGATTGTATCCTCATCCGACGGCACGGTACGTGATCTAATGCACGG CATTATGCAAGGTGCACGACACCATGGTTGTAAATGCTAG back to top
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