jgi.p|Nanoce1779_2|593051, mRNA_5582 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593051
Unique Name	mRNA_5582
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1026
Alignment location	scaffold_13:831469..832494 +

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Properties


Property Name	Value
TranscriptId	593137
Track	FilteredModels2
ProteinId	593051

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:831469..832494 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593051	gene_5582	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593051	mRNA_5582-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5582	CDS_5582	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:831469..832494+
coding sequence from alignment at scaffold_13:831469..832494+

mRNA sequence

>mRNA_5582 ID=mRNA_5582|Name=jgi.p|Nanoce1779_2|593051|organism=Nannochloropsis oceanica|type=mRNA|length=1026bp
AGCCGTATCCATTGAACCCATTCTACACATTACGTACAGCACTCTCTTCA
AACCGACTGATTTGGACTCATGATAGATTGCGGCTAGTCTCGCCACCTCG
GCGAACTGGCGTAACCCATCTACTGCGCAGGGCACTTAAGGGGCCCGAGA
TGAAATTGGCACCACAACACTTCAAGGCAGCCATCAGAAGGCGTGCTGAT
TTGCGTCGCACATGTACGAACCCGAACGCATCTTCTCCCCCCCTCTTTCC
TTTCTTTCTTCCTTCTCTCCTCCTGATCTCAGTCCTCCTTTCAGAAGCTT
CCCTTTTCCCTCTTCGTTGCCCTTCTTCCTCCCTGTCCTCATTTCCCAGA
CTTTCCTACTTCCCTCTTCACTCCCCTTTCTCCTTTCCACTTATTCACTT
TTCCTCCTCCACCCTTCTTCCTATTCTCTTCTCCCTCACCTTTCTCTCTC
CTGCACTCCTCCTCTCCCTCTCCCTCCTTTTCCCTCCACATCCCCCCTCC
TCCTGTCCTTTTTTGCCGCTGGATGTCATCCTCTTCTCTTTCTTACTTTC
TCTCCCTCTCTTCTTCTTTCTCACTTTATCCCCCTCTCCTCTTTTTCACA
TTTCTAATAAAATTCTTCCTCCTCCTCCCATTTCGTCTTCTCTTTCTTCC
CTCTTCCTCATCCCAGACGGAACTTAAATCGTATGTAGCAAAGTATTTGG
TCAAGCAGCTACTCTAGAAGTAAAAGCACTAAACTTCCTCTTATTAACGC
TTCACACCAGTACAGCAAAAAAAACTCCCGTGTGAAACACCATAGATCGC
GCATCTTCATGGCCTATCCTTGGTATCATCTTCGCCCTCACGATGGCTCA
CCCGACGTAGATTCCTACCTCAACCAAGATTTTAACATCAGTAAGGCCAA
CAAGGATAAATGGAGTGTCTAGGGCTGCCTCAACGATTCTTATGGGAATT
ATGGTACCTTAGTTGGTCACTCCTCGGTGACTGCAGAGCTTAAAGACTCA
AAAGACGTCACCGTGAAGTTTATGGG

protein sequence of jgi.p|Nanoce1779_2|593051

>mRNA_5582-protein ID=mRNA_5582-protein|Name=jgi.p|Nanoce1779_2|593051|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MKLAPQHFKAAIRRRADLRRTCTNPNASSPPLFPFFLPSLLLISVLLSEA
SLFPLRCPSSSLSSFPRLSYFPLHSPFSFPLIHFSSSTLLPILFSLTFLS
PALLLSLSLLFPPHPPSSCPFLPLDVILFSFLLSLPLFFFLTLSPSPLFH
ISNKILPPPPISSSLSSLFLIPDGT*

mRNA from alignment at scaffold_13:831469..832494+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5582 ID=mRNA_5582|Name=jgi.p|Nanoce1779_2|593051|organism=Nannochloropsis oceanica|type=mRNA|length=1026bp|location=Sequence derived from alignment at scaffold_13:831469..832494+ (Nannochloropsis oceanica)
AGCCGTATCCATTGAACCCATTCTACACATTACGTACAGCACTCTCTTCA
AACCGACTGATTTGGACTCATGATAGATTGCGGCTAGTCTCGCCACCTCG
GCGAACTGGCGTAACCCATCTACTGCGCAGGGCACTTAAGGGGCCCGAGA
TGAAATTGGCACCACAACACTTCAAGGCAGCCATCAGAAGGCGTGCTGAT
TTGCGTCGCACATGTACGAACCCGAACGCATCTTCTCCCCCCCTCTTTCC
TTTCTTTCTTCCTTCTCTCCTCCTGATCTCAGTCCTCCTTTCAGAAGCTT
CCCTTTTCCCTCTTCGTTGCCCTTCTTCCTCCCTGTCCTCATTTCCCAGA
CTTTCCTACTTCCCTCTTCACTCCCCTTTCTCCTTTCCACTTATTCACTT
TTCCTCCTCCACCCTTCTTCCTATTCTCTTCTCCCTCACCTTTCTCTCTC
CTGCACTCCTCCTCTCCCTCTCCCTCCTTTTCCCTCCACATCCCCCCTCC
TCCTGTCCTTTTTTGCCGCTGGATGTCATCCTCTTCTCTTTCTTACTTTC
TCTCCCTCTCTTCTTCTTTCTCACTTTATCCCCCTCTCCTCTTTTTCACA
TTTCTAATAAAATTCTTCCTCCTCCTCCCATTTCGTCTTCTCTTTCTTCC
CTCTTCCTCATCCCAGACGGAACTTAAATCGTATGTAGCAAAGTATTTGG
TCAAGCAGCTACTCTAGAAGTAAAAGCACTAAACTTCCTCTTATTAACGC
TTCACACCAGTACAGCAAAAAAAACTCCCGTGTGAAACACCATAGATCGC
GCATCTTCATGGCCTATCCTTGGTATCATCTTCGCCCTCACGATGGCTCA
CCCGACGTAGATTCCTACCTCAACCAAGATTTTAACATCAGTAAGGCCAA
CAAGGATAAATGGAGTGTCTAGGGCTGCCTCAACGATTCTTATGGGAATT
ATGGTACCTTAGTTGGTCACTCCTCGGTGACTGCAGAGCTTAAAGACTCA
AAAGACGTCACCGTGAAGTTTATGGG

Coding sequence (CDS) from alignment at scaffold_13:831469..832494+

>mRNA_5582 ID=mRNA_5582|Name=jgi.p|Nanoce1779_2|593051|organism=Nannochloropsis oceanica|type=CDS|length=528bp|location=Sequence derived from alignment at scaffold_13:831469..832494+ (Nannochloropsis oceanica)
ATGAAATTGGCACCACAACACTTCAAGGCAGCCATCAGAAGGCGTGCTGA
TTTGCGTCGCACATGTACGAACCCGAACGCATCTTCTCCCCCCCTCTTTC
CTTTCTTTCTTCCTTCTCTCCTCCTGATCTCAGTCCTCCTTTCAGAAGCT
TCCCTTTTCCCTCTTCGTTGCCCTTCTTCCTCCCTGTCCTCATTTCCCAG
ACTTTCCTACTTCCCTCTTCACTCCCCTTTCTCCTTTCCACTTATTCACT
TTTCCTCCTCCACCCTTCTTCCTATTCTCTTCTCCCTCACCTTTCTCTCT
CCTGCACTCCTCCTCTCCCTCTCCCTCCTTTTCCCTCCACATCCCCCCTC
CTCCTGTCCTTTTTTGCCGCTGGATGTCATCCTCTTCTCTTTCTTACTTT
CTCTCCCTCTCTTCTTCTTTCTCACTTTATCCCCCTCTCCTCTTTTTCAC
ATTTCTAATAAAATTCTTCCTCCTCCTCCCATTTCGTCTTCTCTTTCTTC
CCTCTTCCTCATCCCAGACGGAACTTAA

Synonyms

Publications