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Properties
| Property Name | Value |
|---|
| TranscriptId | 577777 |
| Track | FilteredModels2 |
| ProteinId | 577691 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:1353017..1355055 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_558 ID=mRNA_558|Name=jgi.p|Nanoce1779_2|577691|organism=Nannochloropsis oceanica|type=mRNA|length=1151bp
CAACAGGTTTTCCTTCATCGTCTGGAGAGGAATAACCGAGCCCGCGCCGC
ACAGGAAGAAGAGAAGCAGCAGCATTGGAAGAAGATGCCCAAGCTCCCAG
AAATCTCTAACATCTTCAAATTCTTGAAGGCAGACCCTTCCAAGATCGTC
CCCTACAAGAGCATCCCGGACAAAGTGCCCTTCACACAGCTCTTTCAGCA
TTACCCCGTCTTAGACCCCTTGTATACCCAGTATGAGAAGAATTTCTATG
CGAGTACTTACGTCAAATTTGCGCAAGACACCTGGCCGGTCCTTCCCCTT
GCCTTGTGCGGAATGTACGCGCTGATGATCATCGTCGGCACTAAAGTCAT
GGTCTCACGGCCCAAGCACGAGTGGAAGACGGCGTTGGCATGCTGGAACC
TGATGTTGAGCATTTTCTCCTTCTGTGGGATGATTAGGACGGTTCCGCAT
TTGCTGCACAATGTGGCGACGTTGCCCTTTAAGGACACGATCTGCCGGCA
CCCCGCGGAAACGTACGGTGAAGGGGCCTGCGGCATGTGGGTGATGCTCT
TCATCTTCAGCAAAGTCCCCGAGCTAGTAGACACGGTCTTTATCGTCTTT
CGCAAAAGCAAGCTGCAGTTCCTGCATTGGTACCACCACATTACCGTCCT
CCTCTTCTGCTGGCACTCATACGCCGTCACCTCCTCCACCGGCCTCTACT
TCGTGGCCATGAACTACTCCGTGCATGCCATCATGTACGCCTACTACTAC
CTGACTGCCATTAACGCCTGGCCTAAGTGGATTCCCCCCTCCATCATCAC
CGTCGCGCAGATCTCGCAAATGATCGTCGGTGTTGGAATCTGTGCTTCCT
CTTTTTACTTCCTGTATACAGACCCAGAGCATTGCCAGGTGAAGCGTCAA
AATGTATACGCAGGGGCTCTAATGTATGGAAGTTACCTATATCTGTTCTG
TGACTTCTTTGTGCGACGTTTTTTGAGAGGAGGCAAGCCAAGATTGGGAG
AGGAGAAGAGCGCGGTGTTGACGATGGCCAAGAAAATCAAGGCTATGTAA
GGTGTAGGTGGAGAAGGAGGGAGGGAGGGAGAGAGGGAGGGACGTTGCGC
AGGGACGGGCCTTTGTTTTCGATACTGGATTTGTGAGTGTGAAGCGTATC
T back to topprotein sequence of jgi.p|Nanoce1779_2|577691 >mRNA_558-protein ID=mRNA_558-protein|Name=jgi.p|Nanoce1779_2|577691|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MPKLPEISNIFKFLKADPSKIVPYKSIPDKVPFTQLFQHYPVLDPLYTQY
EKNFYASTYVKFAQDTWPVLPLALCGMYALMIIVGTKVMVSRPKHEWKTA
LACWNLMLSIFSFCGMIRTVPHLLHNVATLPFKDTICRHPAETYGEGACG
MWVMLFIFSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTS
STGLYFVAMNYSVHAIMYAYYYLTAINAWPKWIPPSIITVAQISQMIVGV
GICASSFYFLYTDPEHCQVKRQNVYAGALMYGSYLYLFCDFFVRRFLRGG
KPRLGEEKSAVLTMAKKIKAM* back to topmRNA from alignment at scaffold_3:1353017..1355055- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_558 ID=mRNA_558|Name=jgi.p|Nanoce1779_2|577691|organism=Nannochloropsis oceanica|type=mRNA|length=2039bp|location=Sequence derived from alignment at scaffold_3:1353017..1355055- (Nannochloropsis oceanica)
CAACAGGTTTTCCTTCATCGTCTGGAGAGGAATAACCGAGCCCGCGCCGC
ACAGGAAGAAGAGAAGCAGCAGCATTGGAAGAAGATGCCCAAGCTCCCAG
AAATCTCTAACATCTTCAAATTCTTGAAGGCAGACCCTTCCAAGATCGTC
CCCTACAAGAGCATCCCGGACAAAGTGCCCTTCACACAGGTACGCGTCAC
CTTCCTCTTTTTTCTTCTTGCTACATCAGATCATATTTGTACTATCTACG
CTGTCTACTATCGAGGAAAGGGCAAATTGTGTGCGTGCTGTGTACAAGTT
TCTCTCTTCTCTTCACAACGTTGTGTCCTCATAATGGTACCCTGCCTGAT
GATATGGTGCAACACACGGCCTCGCGCAGGCGGGCAGTTTCTGGTCATTA
GCGTTGGCGCTCATCGCCTTCTGATTCTATTGGAATAATAGCTCAATTAT
ATAGCATGCACTGGCTTCCCCTTGAAAATGAGATGCGAATTTCTTTACTG
AGTTTTATCCCCTTTACTCTCCCGCACCTACAGCTCTTTCAGCATTACCC
CGTCTTAGACCCCTTGTATACCCAGTATGAGAAGAATTTCTATGCGAGTA
CTTACGTCAAATTTGCGCAAGACACCTGGCCGGTCCTTCCCCTTGCCTTG
TGCGGAATGTACGCGCTGATGATCATCGTCGGCACTAAAGTCATGGTCTC
ACGGCCCAAGCACGAGTGGAAGACGGCGTTGGCATGCTGGAACCTGATGT
TGAGCATTTTCTCCTTCTGTGGGATGATTAGGACGGTTCCGCATTTGCTG
CACAATGTGGCGACGTTGCCCTTTAAGGTAGGTACCCCCCTCGATCCTCT
CCTCCCTCCCTTCCTCCCTCACTCCCTCTCTACTATGCCCCCGTCCTGGC
CCCTCCGTTGTCGTTTGGCGCTGGGGCCTCCGATAGTTACAGCCACATTC
ACCTGTAATATTCTCCTATTTTACTTCTTTTCTCAATTCTCAGGACACGA
TCTGCCGGCACCCCGCGGAAACGTACGGTGAAGGGGCCTGCGGCATGTGG
GTGATGCTCTTCATCTTCAGCAAAGTCCCCGAGCTAGTAGACACGGTCTT
TATCGTCTTTCGCAAAAGCAAGCTGCAGGTATGTATATATTACATATATA
TACATATTACTTTTATCTCCTATTGTTTCTGTCTTTCCTTCCCGCCCTCC
ATTCGTCGTGTGGATGTAATAGATGAAATTCTTGATCAAGACTTTCCAGA
AGGCTCGGAATTGGAGTCGGCCGTGTGTGTGGATGGATACCATAAGAAAT
TAAAGAGCTCCGTCTCATCTCTCCTCCCACCATTCCCCATCCCATTCCGC
ACCCAACCACTCAGTTCCTGCATTGGTACCACCACATTACCGTCCTCCTC
TTCTGCTGGCACTCATACGCCGTCACCTCCTCCACCGGCCTCTACTTCGT
GGCCATGAACTACTCCGTGCATGCCATCATGTACGCCTACTACTACCTGG
TACGTGCCTTATTTCTCCCGTCCCTCTATTAGTTTCTTTCCCCTCACGCT
ACCGTCTCATACTTTACATATCCTTGTACTCCCACTCATAAGGCTTTTCT
TTTCTCCTCTCCCTTCCCCCTTCCCTAATCACCTCCCTTAGACTGCCATT
AACGCCTGGCCTAAGTGGATTCCCCCCTCCATCATCACCGTCGCGCAGAT
CTCGCAAATGATCGTCGGTGTTGGAATCTGTGCTTCCTCTTTTTACTTCC
TGTATACAGACCCAGAGCATTGCCAGGTGAAGCGTCAAAATGTATACGCA
GGGGCTCTAATGTATGGAAGTTACCTATATCTGTTCTGTGACTTCTTTGT
GCGACGTTTTTTGAGAGGAGGCAAGCCAAGATTGGGAGAGGAGAAGAGCG
CGGTGTTGACGATGGCCAAGAAAATCAAGGCTATGTAAGGTGTAGGTGGA
GAAGGAGGGAGGGAGGGAGAGAGGGAGGGACGTTGCGCAGGGACGGGCCT
TTGTTTTCGATACTGGATTTGTGAGTGTGAAGCGTATCT back to topCoding sequence (CDS) from alignment at scaffold_3:1353017..1355055- >mRNA_558 ID=mRNA_558|Name=jgi.p|Nanoce1779_2|577691|organism=Nannochloropsis oceanica|type=CDS|length=4830bp|location=Sequence derived from alignment at scaffold_3:1353017..1355055- (Nannochloropsis oceanica)
ACTGCCATTAACGCCTGGCCTAAGTGGATTCCCCCCTCCATCATCACCGT
CGCGCAGATCTCGCAAATGATCGTCGGTGTTGGAATCTGTGCTTCCTCTT
TTTACTTCCTGTATACAGACCCAGAGCATTGCCAGGTGAAGCGTCAAAAT
GTATACGCAGGGGCTCTAATGTATGGAAGTTACCTATATCTGTTCTGTGA
CTTCTTTGTGCGACGTTTTTTGAGAGGAGGCAAGCCAAGATTGGGAGAGG
AGAAGAGCGCGGTGTTGACGATGGCCAAGAAAATCAAGGCTATGTAATTC
CTGCATTGGTACCACCACATTACCGTCCTCCTCTTCTGCTGGCACTCATA
CGCCGTCACCTCCTCCACCGGCCTCTACTTCGTGGCCATGAACTACTCCG
TGCATGCCATCATGTACGCCTACTACTACCTGGACACGATCTGCCGGCAC
CCCGCGGAAACGTACGGTGAAGGGGCCTGCGGCATGTGGGTGATGCTCTT
CATCTTCAGCAAAGTCCCCGAGCTAGTAGACACGGTCTTTATCGTCTTTC
GCAAAAGCAAGCTGCAGCTCTTTCAGCATTACCCCGTCTTAGACCCCTTG
TATACCCAGTATGAGAAGAATTTCTATGCGAGTACTTACGTCAAATTTGC
GCAAGACACCTGGCCGGTCCTTCCCCTTGCCTTGTGCGGAATGTACGCGC
TGATGATCATCGTCGGCACTAAAGTCATGGTCTCACGGCCCAAGCACGAG
TGGAAGACGGCGTTGGCATGCTGGAACCTGATGTTGAGCATTTTCTCCTT
CTGTGGGATGATTAGGACGGTTCCGCATTTGCTGCACAATGTGGCGACGT
TGCCCTTTAAGATGCCCAAGCTCCCAGAAATCTCTAACATCTTCAAATTC
TTGAAGGCAGACCCTTCCAAGATCGTCCCCTACAAGAGCATCCCGGACAA
AGTGCCCTTCACACAGACTGCCATTAACGCCTGGCCTAAGTGGATTCCCC
CCTCCATCATCACCGTCGCGCAGATCTCGCAAATGATCGTCGGTGTTGGA
ATCTGTGCTTCCTCTTTTTACTTCCTGTATACAGACCCAGAGCATTGCCA
GGTGAAGCGTCAAAATGTATACGCAGGGGCTCTAATGTATGGAAGTTACC
TATATCTGTTCTGTGACTTCTTTGTGCGACGTTTTTTGAGAGGAGGCAAG
CCAAGATTGGGAGAGGAGAAGAGCGCGGTGTTGACGATGGCCAAGAAAAT
CAAGGCTATGTAATTCCTGCATTGGTACCACCACATTACCGTCCTCCTCT
TCTGCTGGCACTCATACGCCGTCACCTCCTCCACCGGCCTCTACTTCGTG
GCCATGAACTACTCCGTGCATGCCATCATGTACGCCTACTACTACCTGGA
CACGATCTGCCGGCACCCCGCGGAAACGTACGGTGAAGGGGCCTGCGGCA
TGTGGGTGATGCTCTTCATCTTCAGCAAAGTCCCCGAGCTAGTAGACACG
GTCTTTATCGTCTTTCGCAAAAGCAAGCTGCAGCTCTTTCAGCATTACCC
CGTCTTAGACCCCTTGTATACCCAGTATGAGAAGAATTTCTATGCGAGTA
CTTACGTCAAATTTGCGCAAGACACCTGGCCGGTCCTTCCCCTTGCCTTG
TGCGGAATGTACGCGCTGATGATCATCGTCGGCACTAAAGTCATGGTCTC
ACGGCCCAAGCACGAGTGGAAGACGGCGTTGGCATGCTGGAACCTGATGT
TGAGCATTTTCTCCTTCTGTGGGATGATTAGGACGGTTCCGCATTTGCTG
CACAATGTGGCGACGTTGCCCTTTAAGATGCCCAAGCTCCCAGAAATCTC
TAACATCTTCAAATTCTTGAAGGCAGACCCTTCCAAGATCGTCCCCTACA
AGAGCATCCCGGACAAAGTGCCCTTCACACAGACTGCCATTAACGCCTGG
CCTAAGTGGATTCCCCCCTCCATCATCACCGTCGCGCAGATCTCGCAAAT
GATCGTCGGTGTTGGAATCTGTGCTTCCTCTTTTTACTTCCTGTATACAG
ACCCAGAGCATTGCCAGGTGAAGCGTCAAAATGTATACGCAGGGGCTCTA
ATGTATGGAAGTTACCTATATCTGTTCTGTGACTTCTTTGTGCGACGTTT
TTTGAGAGGAGGCAAGCCAAGATTGGGAGAGGAGAAGAGCGCGGTGTTGA
CGATGGCCAAGAAAATCAAGGCTATGTAATTCCTGCATTGGTACCACCAC
ATTACCGTCCTCCTCTTCTGCTGGCACTCATACGCCGTCACCTCCTCCAC
CGGCCTCTACTTCGTGGCCATGAACTACTCCGTGCATGCCATCATGTACG
CCTACTACTACCTGGACACGATCTGCCGGCACCCCGCGGAAACGTACGGT
GAAGGGGCCTGCGGCATGTGGGTGATGCTCTTCATCTTCAGCAAAGTCCC
CGAGCTAGTAGACACGGTCTTTATCGTCTTTCGCAAAAGCAAGCTGCAGC
TCTTTCAGCATTACCCCGTCTTAGACCCCTTGTATACCCAGTATGAGAAG
AATTTCTATGCGAGTACTTACGTCAAATTTGCGCAAGACACCTGGCCGGT
CCTTCCCCTTGCCTTGTGCGGAATGTACGCGCTGATGATCATCGTCGGCA
CTAAAGTCATGGTCTCACGGCCCAAGCACGAGTGGAAGACGGCGTTGGCA
TGCTGGAACCTGATGTTGAGCATTTTCTCCTTCTGTGGGATGATTAGGAC
GGTTCCGCATTTGCTGCACAATGTGGCGACGTTGCCCTTTAAGATGCCCA
AGCTCCCAGAAATCTCTAACATCTTCAAATTCTTGAAGGCAGACCCTTCC
AAGATCGTCCCCTACAAGAGCATCCCGGACAAAGTGCCCTTCACACAGAC
TGCCATTAACGCCTGGCCTAAGTGGATTCCCCCCTCCATCATCACCGTCG
CGCAGATCTCGCAAATGATCGTCGGTGTTGGAATCTGTGCTTCCTCTTTT
TACTTCCTGTATACAGACCCAGAGCATTGCCAGGTGAAGCGTCAAAATGT
ATACGCAGGGGCTCTAATGTATGGAAGTTACCTATATCTGTTCTGTGACT
TCTTTGTGCGACGTTTTTTGAGAGGAGGCAAGCCAAGATTGGGAGAGGAG
AAGAGCGCGGTGTTGACGATGGCCAAGAAAATCAAGGCTATGTAATTCCT
GCATTGGTACCACCACATTACCGTCCTCCTCTTCTGCTGGCACTCATACG
CCGTCACCTCCTCCACCGGCCTCTACTTCGTGGCCATGAACTACTCCGTG
CATGCCATCATGTACGCCTACTACTACCTGGACACGATCTGCCGGCACCC
CGCGGAAACGTACGGTGAAGGGGCCTGCGGCATGTGGGTGATGCTCTTCA
TCTTCAGCAAAGTCCCCGAGCTAGTAGACACGGTCTTTATCGTCTTTCGC
AAAAGCAAGCTGCAGCTCTTTCAGCATTACCCCGTCTTAGACCCCTTGTA
TACCCAGTATGAGAAGAATTTCTATGCGAGTACTTACGTCAAATTTGCGC
AAGACACCTGGCCGGTCCTTCCCCTTGCCTTGTGCGGAATGTACGCGCTG
ATGATCATCGTCGGCACTAAAGTCATGGTCTCACGGCCCAAGCACGAGTG
GAAGACGGCGTTGGCATGCTGGAACCTGATGTTGAGCATTTTCTCCTTCT
GTGGGATGATTAGGACGGTTCCGCATTTGCTGCACAATGTGGCGACGTTG
CCCTTTAAGATGCCCAAGCTCCCAGAAATCTCTAACATCTTCAAATTCTT
GAAGGCAGACCCTTCCAAGATCGTCCCCTACAAGAGCATCCCGGACAAAG
TGCCCTTCACACAGACTGCCATTAACGCCTGGCCTAAGTGGATTCCCCCC
TCCATCATCACCGTCGCGCAGATCTCGCAAATGATCGTCGGTGTTGGAAT
CTGTGCTTCCTCTTTTTACTTCCTGTATACAGACCCAGAGCATTGCCAGG
TGAAGCGTCAAAATGTATACGCAGGGGCTCTAATGTATGGAAGTTACCTA
TATCTGTTCTGTGACTTCTTTGTGCGACGTTTTTTGAGAGGAGGCAAGCC
AAGATTGGGAGAGGAGAAGAGCGCGGTGTTGACGATGGCCAAGAAAATCA
AGGCTATGTAATTCCTGCATTGGTACCACCACATTACCGTCCTCCTCTTC
TGCTGGCACTCATACGCCGTCACCTCCTCCACCGGCCTCTACTTCGTGGC
CATGAACTACTCCGTGCATGCCATCATGTACGCCTACTACTACCTGGACA
CGATCTGCCGGCACCCCGCGGAAACGTACGGTGAAGGGGCCTGCGGCATG
TGGGTGATGCTCTTCATCTTCAGCAAAGTCCCCGAGCTAGTAGACACGGT
CTTTATCGTCTTTCGCAAAAGCAAGCTGCAGCTCTTTCAGCATTACCCCG
TCTTAGACCCCTTGTATACCCAGTATGAGAAGAATTTCTATGCGAGTACT
TACGTCAAATTTGCGCAAGACACCTGGCCGGTCCTTCCCCTTGCCTTGTG
CGGAATGTACGCGCTGATGATCATCGTCGGCACTAAAGTCATGGTCTCAC
GGCCCAAGCACGAGTGGAAGACGGCGTTGGCATGCTGGAACCTGATGTTG
AGCATTTTCTCCTTCTGTGGGATGATTAGGACGGTTCCGCATTTGCTGCA
CAATGTGGCGACGTTGCCCTTTAAGATGCCCAAGCTCCCAGAAATCTCTA
ACATCTTCAAATTCTTGAAGGCAGACCCTTCCAAGATCGTCCCCTACAAG
AGCATCCCGGACAAAGTGCCCTTCACACAG back to top
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