jgi.p|Nanoce1779_2|625743, mRNA_5579 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|625743
Unique NamemRNA_5579
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length970
Alignment locationscaffold_13:811246..812650 -

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Properties
Property NameValue
TranscriptId625829
TrackFilteredModels2
ProteinId625743
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:811246..812650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625743gene_5579Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625743mRNA_5579-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5579CDS_5579Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5579 ID=mRNA_5579|Name=jgi.p|Nanoce1779_2|625743|organism=Nannochloropsis oceanica|type=mRNA|length=970bp
ACAGGAATGAAACATTCTTCCTCCGCCACCTTTCTTCTCGTCGCTTGCCT
CGTGGTCCTTCACAGCGCCTCTGCCTTCATGTTGCCCCGTGCTTCCGTCT
TGGCTTTCCAGCGCGTAGGACCCTCCATCGCTCGTGCCCCAGCCCATGCT
GCCGGCCGCCGTATGATGCTCTCCCGCAGCCTGGCCATGGCCGCGAACCC
CAAGGTGTACTTTGACATCGAGATTGGTGGGGAGAAGACCGGCCGCATCA
TCATGGAGCTTGCTGCCGACGTAGCCCCCAAGACTGCCGAGAACTTCCGT
CAGATCGCTACGGGGGAGGCCGGTTTCACCTATAAGGGCTCGGCCTTCCA
CCGCGTGATCCCCGACTTCATGCTCCAGGGCGGCGACATTACTCGCGGAG
ACGGCACCGGCGGCCAGTCTATTTACGGACGCACTTTCCCGGACGAGAAC
TTCACACTCAAGCATAAAGGCGTGGGACTCCTGTCTATGGCCAATGCCGG
GCCTAACACTAACGGCTCCCAGTTTTTCATCACTACCGTCGAGACCCCTT
GGTTGGACGGACGGCACACCGTGTTCGGGAAGGTAACGGAAGGCATGGAT
GTGGTGCGCAAGGTGGAGGCCGTCGGATCCCCCCGTGGCACTCCCAGCAA
AAAGGTTGTCATTGCTGACTCAGGCGAGCTGAAATAGAGCAAGGCATGGG
ATTCATAGGAACAAACGAAGAGGCGGGAAGGCTGTGTCGTGTCGCGGTGT
CTTTCAGCGGGGGCGAAGAAATTAGAAAAGACACCGGCAGGAGGAGGGAA
AAAAAAAAGGAGAAGGAGATCTAGTTCATTTCGTGGATATGTGTAAGGGT
GGGAGTCTGTCTGACTGTGGCATGCCCCGCAGTGGCGCTGCCCTTAACGT
TGAGCGTCAATGCATCCCAAGGATTATTGACAATGAAAAAAAACATGGAA
TTCAAAATCATTTATAACAC
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protein sequence of jgi.p|Nanoce1779_2|625743

>mRNA_5579-protein ID=mRNA_5579-protein|Name=jgi.p|Nanoce1779_2|625743|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MKHSSSATFLLVACLVVLHSASAFMLPRASVLAFQRVGPSIARAPAHAAG
RRMMLSRSLAMAANPKVYFDIEIGGEKTGRIIMELAADVAPKTAENFRQI
ATGEAGFTYKGSAFHRVIPDFMLQGGDITRGDGTGGQSIYGRTFPDENFT
LKHKGVGLLSMANAGPNTNGSQFFITTVETPWLDGRHTVFGKVTEGMDVV
RKVEAVGSPRGTPSKKVVIADSGELK*
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mRNA from alignment at scaffold_13:811246..812650-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5579 ID=mRNA_5579|Name=jgi.p|Nanoce1779_2|625743|organism=Nannochloropsis oceanica|type=mRNA|length=1405bp|location=Sequence derived from alignment at scaffold_13:811246..812650- (Nannochloropsis oceanica)
ACAGGAATGAAACATTCTTCCTCCGCCACCTTTCTTCTCGTCGCTTGCCT
CGTGGTCCTTCACAGCGCCTCTGCCTTCATGTTGCCCCGTGCTTCCGTCT
TGGCTTTCCAGCGCGTAGGACCCTCCATCGCTCGTGCCCCAGCCCATGCT
GCCGGCCGCCGTATGATGCTCTCCCGCAGCCTGGCCATGGCCGCGAACCC
CAAGGTAAGGTTTGGATTGTAGTGAAGAAAAGAGAAAAGCGGTCAGATGG
ACTGCAAAGATACTTAACCCGACTTCCGTCCTCTCCCCTTGCCTCACTTG
CACTGTCTTAAGGTGTACTTTGACATCGAGATTGGTGGGGAGAAGACCGG
CCGCATCATCATGGAGCTTGCTGCCGACGTAGCCCCCAAGACTGCCGGTA
AGTGCCAAAACAAATCCCTCAGTCTGCGACCTCTCCGTCTACCCCGTTCC
TTCGACTCGTTCCACCCCCAAGGTCTCACCGCCATTACATTTTCATCTTC
TCTCAACCACTCCCGGCACACAAATAATCACACTTCCAACGTGCAGAGAA
CTTCCGTCAGATCGCTACGGGGGAGGCCGGTTTCACCTATAAGGGCTCGG
CCTTCCACCGCGTGATCCCCGACTTCATGCTCCAGGGCGGCGACATTACT
CGCGGAGACGGCACCGGCGGCCAGTCTATTTACGGACGCACTTTCCCGGA
CGAGAACTTCACACTCAAGCATAAAGGCGTGGGACTCCTGTCTATGGCCA
ATGCCGGGCCTAACACTAACGGCTCCCAGTTTTTCATCACTACCGTCGAG
ACCCCTTGGTACTGTAGCTTACGGGTTTGGTTTGAGCCACCCTCCATCTG
CCCTTATCTGCTTCGTTTATTTCCTTTTTGCCTAGAGTAGTCGGTCATTC
AACCACTCACTTCTGTTTCCCTGGTTGGCATCTTCCCCTTTCCATTGACT
TAAAATTTCCCTCCCACAAACACAACTCATATGCAGGTTGGACGGACGGC
ACACCGTGTTCGGGAAGGTAACGGAAGGCATGGATGTGGTGCGCAAGGTG
GAGGCCGTCGGATCCCCCCGTGGCACTCCCAGCAAAAAGGTTGTCATTGC
TGACTCAGGCGAGCTGAAATAGAGCAAGGCATGGGATTCATAGGAACAAA
CGAAGAGGCGGGAAGGCTGTGTCGTGTCGCGGTGTCTTTCAGCGGGGGCG
AAGAAATTAGAAAAGACACCGGCAGGAGGAGGGAAAAAAAAAAGGAGAAG
GAGATCTAGTTCATTTCGTGGATATGTGTAAGGGTGGGAGTCTGTCTGAC
TGTGGCATGCCCCGCAGTGGCGCTGCCCTTAACGTTGAGCGTCAATGCAT
CCCAAGGATTATTGACAATGAAAAAAAACATGGAATTCAAAATCATTTAT
AACAC
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Coding sequence (CDS) from alignment at scaffold_13:811246..812650-

>mRNA_5579 ID=mRNA_5579|Name=jgi.p|Nanoce1779_2|625743|organism=Nannochloropsis oceanica|type=CDS|length=2724bp|location=Sequence derived from alignment at scaffold_13:811246..812650- (Nannochloropsis oceanica)
GTTGGACGGACGGCACACCGTGTTCGGGAAGGTAACGGAAGGCATGGATG
TGGTGCGCAAGGTGGAGGCCGTCGGATCCCCCCGTGGCACTCCCAGCAAA
AAGGTTGTCATTGCTGACTCAGGCGAGCTGAAATAGAGAACTTCCGTCAG
ATCGCTACGGGGGAGGCCGGTTTCACCTATAAGGGCTCGGCCTTCCACCG
CGTGATCCCCGACTTCATGCTCCAGGGCGGCGACATTACTCGCGGAGACG
GCACCGGCGGCCAGTCTATTTACGGACGCACTTTCCCGGACGAGAACTTC
ACACTCAAGCATAAAGGCGTGGGACTCCTGTCTATGGCCAATGCCGGGCC
TAACACTAACGGCTCCCAGTTTTTCATCACTACCGTCGAGACCCCTTGGT
GTACTTTGACATCGAGATTGGTGGGGAGAAGACCGGCCGCATCATCATGG
AGCTTGCTGCCGACGTAGCCCCCAAGACTGCCGATGAAACATTCTTCCTC
CGCCACCTTTCTTCTCGTCGCTTGCCTCGTGGTCCTTCACAGCGCCTCTG
CCTTCATGTTGCCCCGTGCTTCCGTCTTGGCTTTCCAGCGCGTAGGACCC
TCCATCGCTCGTGCCCCAGCCCATGCTGCCGGCCGCCGTATGATGCTCTC
CCGCAGCCTGGCCATGGCCGCGAACCCCAAGGTTGGACGGACGGCACACC
GTGTTCGGGAAGGTAACGGAAGGCATGGATGTGGTGCGCAAGGTGGAGGC
CGTCGGATCCCCCCGTGGCACTCCCAGCAAAAAGGTTGTCATTGCTGACT
CAGGCGAGCTGAAATAGAGAACTTCCGTCAGATCGCTACGGGGGAGGCCG
GTTTCACCTATAAGGGCTCGGCCTTCCACCGCGTGATCCCCGACTTCATG
CTCCAGGGCGGCGACATTACTCGCGGAGACGGCACCGGCGGCCAGTCTAT
TTACGGACGCACTTTCCCGGACGAGAACTTCACACTCAAGCATAAAGGCG
TGGGACTCCTGTCTATGGCCAATGCCGGGCCTAACACTAACGGCTCCCAG
TTTTTCATCACTACCGTCGAGACCCCTTGGTGTACTTTGACATCGAGATT
GGTGGGGAGAAGACCGGCCGCATCATCATGGAGCTTGCTGCCGACGTAGC
CCCCAAGACTGCCGATGAAACATTCTTCCTCCGCCACCTTTCTTCTCGTC
GCTTGCCTCGTGGTCCTTCACAGCGCCTCTGCCTTCATGTTGCCCCGTGC
TTCCGTCTTGGCTTTCCAGCGCGTAGGACCCTCCATCGCTCGTGCCCCAG
CCCATGCTGCCGGCCGCCGTATGATGCTCTCCCGCAGCCTGGCCATGGCC
GCGAACCCCAAGGTTGGACGGACGGCACACCGTGTTCGGGAAGGTAACGG
AAGGCATGGATGTGGTGCGCAAGGTGGAGGCCGTCGGATCCCCCCGTGGC
ACTCCCAGCAAAAAGGTTGTCATTGCTGACTCAGGCGAGCTGAAATAGAG
AACTTCCGTCAGATCGCTACGGGGGAGGCCGGTTTCACCTATAAGGGCTC
GGCCTTCCACCGCGTGATCCCCGACTTCATGCTCCAGGGCGGCGACATTA
CTCGCGGAGACGGCACCGGCGGCCAGTCTATTTACGGACGCACTTTCCCG
GACGAGAACTTCACACTCAAGCATAAAGGCGTGGGACTCCTGTCTATGGC
CAATGCCGGGCCTAACACTAACGGCTCCCAGTTTTTCATCACTACCGTCG
AGACCCCTTGGTGTACTTTGACATCGAGATTGGTGGGGAGAAGACCGGCC
GCATCATCATGGAGCTTGCTGCCGACGTAGCCCCCAAGACTGCCGATGAA
ACATTCTTCCTCCGCCACCTTTCTTCTCGTCGCTTGCCTCGTGGTCCTTC
ACAGCGCCTCTGCCTTCATGTTGCCCCGTGCTTCCGTCTTGGCTTTCCAG
CGCGTAGGACCCTCCATCGCTCGTGCCCCAGCCCATGCTGCCGGCCGCCG
TATGATGCTCTCCCGCAGCCTGGCCATGGCCGCGAACCCCAAGGTTGGAC
GGACGGCACACCGTGTTCGGGAAGGTAACGGAAGGCATGGATGTGGTGCG
CAAGGTGGAGGCCGTCGGATCCCCCCGTGGCACTCCCAGCAAAAAGGTTG
TCATTGCTGACTCAGGCGAGCTGAAATAGAGAACTTCCGTCAGATCGCTA
CGGGGGAGGCCGGTTTCACCTATAAGGGCTCGGCCTTCCACCGCGTGATC
CCCGACTTCATGCTCCAGGGCGGCGACATTACTCGCGGAGACGGCACCGG
CGGCCAGTCTATTTACGGACGCACTTTCCCGGACGAGAACTTCACACTCA
AGCATAAAGGCGTGGGACTCCTGTCTATGGCCAATGCCGGGCCTAACACT
AACGGCTCCCAGTTTTTCATCACTACCGTCGAGACCCCTTGGTGTACTTT
GACATCGAGATTGGTGGGGAGAAGACCGGCCGCATCATCATGGAGCTTGC
TGCCGACGTAGCCCCCAAGACTGCCGATGAAACATTCTTCCTCCGCCACC
TTTCTTCTCGTCGCTTGCCTCGTGGTCCTTCACAGCGCCTCTGCCTTCAT
GTTGCCCCGTGCTTCCGTCTTGGCTTTCCAGCGCGTAGGACCCTCCATCG
CTCGTGCCCCAGCCCATGCTGCCGGCCGCCGTATGATGCTCTCCCGCAGC
CTGGCCATGGCCGCGAACCCCAAG
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Synonyms
Publications