jgi.p|Nanoce1779_2|529283, mRNA_5577 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|529283
Unique NamemRNA_5577
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length762
Alignment locationscaffold_13:808535..809719 -

Link to JBrowse

Properties
Property NameValue
TranscriptId529369
TrackFilteredModels2
ProteinId529283
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:808535..809719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529283gene_5577Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529283mRNA_5577-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5577CDS_5577Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5577 ID=mRNA_5577|Name=jgi.p|Nanoce1779_2|529283|organism=Nannochloropsis oceanica|type=mRNA|length=762bp
ATGGCGGCGGCAGCCGGCGAAAAGGTGGATGTGGCCATTGTGACAGGAGG
ATCTCGCGGGATCGGCAAAGCCTGCGCGTTGGAGCTCGCCAAGTACGGTG
TGAAGGTGGTGGTGAACTACGCCTCCTCGGCCGAGTCTGCTCTGGCCGTG
GTGGAAGAGATTAAAGCCCTGGGGTCCGAGGCCGTGGCCATTAAGGCCGA
TATGTCCAAGCCCGCCGAGGTGGATGCCCTGTTCAAGGAGACCGCCGCGG
CCTTCAAGGACCCCGTATCCATTCTTGTCAATAACGCCGGCATCACCAAG
GACGGCCTGGTCCTGACCATGAAGCCCGAGAACTGGCAAGCCGTGATCGA
TATCAATCTTTCCGGTGTTTTCTACGCCTCCAAGGCTGCCGCGTCCGTCA
TGCTCCGAGCCCGGCGCGGCCGCATCATCAACATGGCCTCGGTTGTCGGC
CAGATCGGGAATCCTGGACAGGCCAACTATGCGGCGGCTAAAGGCGGTGT
CCTGGGCCTGACTAAGGCCAACGCCAAGGAGTTCGCGGCGCGTGGGGTGA
CGGTCAACGCGGTCTGCCCCGGGTTCATCGAGAGTGACATGACAGAAAAG
CTGGACTTAGACGGAATCAAGAAGGCGATCCCGTTGGGGAGGCTGGGGAA
GTCGAGCGAGGTGGCCGGCATGGTGCGTTTCTTGGCGATTGACCCGGCGG
CGCTGTACATCACAGGTCATTCCTTTGACGTTGATGGGGGGATTGCGATT
GGCTCGACTTAA
back to top

protein sequence of jgi.p|Nanoce1779_2|529283

>mRNA_5577-protein ID=mRNA_5577-protein|Name=jgi.p|Nanoce1779_2|529283|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MAAAAGEKVDVAIVTGGSRGIGKACALELAKYGVKVVVNYASSAESALAV
VEEIKALGSEAVAIKADMSKPAEVDALFKETAAAFKDPVSILVNNAGITK
DGLVLTMKPENWQAVIDINLSGVFYASKAAASVMLRARRGRIINMASVVG
QIGNPGQANYAAAKGGVLGLTKANAKEFAARGVTVNAVCPGFIESDMTEK
LDLDGIKKAIPLGRLGKSSEVAGMVRFLAIDPAALYITGHSFDVDGGIAI
GST*
back to top

mRNA from alignment at scaffold_13:808535..809719-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5577 ID=mRNA_5577|Name=jgi.p|Nanoce1779_2|529283|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp|location=Sequence derived from alignment at scaffold_13:808535..809719- (Nannochloropsis oceanica)
ATGGCGGCGGCAGCCGGCGAAAAGGTGGATGTGGCCATTGTGACAGGAGG
ATCTCGCGGGATCGGCAAAGCCTGCGCGTTGGAGCTCGCCAAGTACGGTG
TGAAGGTGGTGGTGAACTACGCCTCCTCGGCCGAGTCTGCTCTGGCCGTG
GTGGAAGAGATTAAAGCCCTGGGGTCCGAGGCCGTGGCCATTAAGGTATA
CAGCGGCGGTATTTGGGAAACAATCGAGACGGAATGGCAATATATAGTGT
TATATTTAATATTTCCTCCCTTTCTACCCTCCCTTTCCTCTAGGCCGATA
TGTCCAAGCCCGCCGAGGTGGATGCCCTGTTCAAGGAGACCGCCGCGGCC
TTCAAGGACCCCGTATCCATTCTTGTCAATAACGCCGGCATCACCAAGGA
CGGTACGTATTTATGGATTCGTTGATTTGTTCGTCCATTCTTGTCTCTCG
TAAGGGCCTTGCTCCCCCCTTCCTCTGCCTCATCTCTTCAATTTCCCACC
ACCTAACCCTTCTTCCCTTCCTAAGGCCTGGTCCTGACCATGAAGCCCGA
GAACTGGCAAGCCGTGATCGATATCAATCTTTCCGGTGTTTTCTACGCCT
CCAAGGCTGCCGCGTCCGTCATGCTCCGAGCCCGGCGCGGCCGCATCATC
AACATGGCCTCGGTTGTCGGCCAGATCGGGAATCCTGGACAGGTGGGTGT
GCGCTTCTTTCTCTTCTTCTTACATCTGCTTTTTTTCGTCACGATTTCTG
CACTTAGCCCTCCTCTTTCCCCTTGCATCGGCCCACTCAAATTCTCTACA
GCCCAAAACAACAAGTACCCACCACCTCTCCCTCTCTCCTTCTCTCCCTC
CATTCCTCTCTCCCTCCCTCCCTTTCTTCCGATACCCCGCCCAGGCCAAC
TATGCGGCGGCTAAAGGCGGTGTCCTGGGCCTGACTAAGGCCAACGCCAA
GGAGTTCGCGGCGCGTGGGGTGACGGTCAACGCGGTCTGCCCCGGGTTCA
TCGAGAGTGACATGACAGAAAAGCTGGACTTAGACGGAATCAAGAAGGCG
ATCCCGTTGGGGAGGCTGGGGAAGTCGAGCGAGGTGGCCGGCATGGTGCG
TTTCTTGGCGATTGACCCGGCGGCGCTGTACATCACAGGTCATTCCTTTG
ACGTTGATGGGGGGATTGCGATTGGCTCGACTTAA
back to top

Coding sequence (CDS) from alignment at scaffold_13:808535..809719-

>mRNA_5577 ID=mRNA_5577|Name=jgi.p|Nanoce1779_2|529283|organism=Nannochloropsis oceanica|type=CDS|length=3048bp|location=Sequence derived from alignment at scaffold_13:808535..809719- (Nannochloropsis oceanica)
GCCAACTATGCGGCGGCTAAAGGCGGTGTCCTGGGCCTGACTAAGGCCAA
CGCCAAGGAGTTCGCGGCGCGTGGGGTGACGGTCAACGCGGTCTGCCCCG
GGTTCATCGAGAGTGACATGACAGAAAAGCTGGACTTAGACGGAATCAAG
AAGGCGATCCCGTTGGGGAGGCTGGGGAAGTCGAGCGAGGTGGCCGGCAT
GGTGCGTTTCTTGGCGATTGACCCGGCGGCGCTGTACATCACAGGTCATT
CCTTTGACGTTGATGGGGGGATTGCGATTGGCTCGACTTAAGCCTGGTCC
TGACCATGAAGCCCGAGAACTGGCAAGCCGTGATCGATATCAATCTTTCC
GGTGTTTTCTACGCCTCCAAGGCTGCCGCGTCCGTCATGCTCCGAGCCCG
GCGCGGCCGCATCATCAACATGGCCTCGGTTGTCGGCCAGATCGGGAATC
CTGGACAGGCCGATATGTCCAAGCCCGCCGAGGTGGATGCCCTGTTCAAG
GAGACCGCCGCGGCCTTCAAGGACCCCGTATCCATTCTTGTCAATAACGC
CGGCATCACCAAGGACGATGGCGGCGGCAGCCGGCGAAAAGGTGGATGTG
GCCATTGTGACAGGAGGATCTCGCGGGATCGGCAAAGCCTGCGCGTTGGA
GCTCGCCAAGTACGGTGTGAAGGTGGTGGTGAACTACGCCTCCTCGGCCG
AGTCTGCTCTGGCCGTGGTGGAAGAGATTAAAGCCCTGGGGTCCGAGGCC
GTGGCCATTAAGGCCAACTATGCGGCGGCTAAAGGCGGTGTCCTGGGCCT
GACTAAGGCCAACGCCAAGGAGTTCGCGGCGCGTGGGGTGACGGTCAACG
CGGTCTGCCCCGGGTTCATCGAGAGTGACATGACAGAAAAGCTGGACTTA
GACGGAATCAAGAAGGCGATCCCGTTGGGGAGGCTGGGGAAGTCGAGCGA
GGTGGCCGGCATGGTGCGTTTCTTGGCGATTGACCCGGCGGCGCTGTACA
TCACAGGTCATTCCTTTGACGTTGATGGGGGGATTGCGATTGGCTCGACT
TAAGCCTGGTCCTGACCATGAAGCCCGAGAACTGGCAAGCCGTGATCGAT
ATCAATCTTTCCGGTGTTTTCTACGCCTCCAAGGCTGCCGCGTCCGTCAT
GCTCCGAGCCCGGCGCGGCCGCATCATCAACATGGCCTCGGTTGTCGGCC
AGATCGGGAATCCTGGACAGGCCGATATGTCCAAGCCCGCCGAGGTGGAT
GCCCTGTTCAAGGAGACCGCCGCGGCCTTCAAGGACCCCGTATCCATTCT
TGTCAATAACGCCGGCATCACCAAGGACGATGGCGGCGGCAGCCGGCGAA
AAGGTGGATGTGGCCATTGTGACAGGAGGATCTCGCGGGATCGGCAAAGC
CTGCGCGTTGGAGCTCGCCAAGTACGGTGTGAAGGTGGTGGTGAACTACG
CCTCCTCGGCCGAGTCTGCTCTGGCCGTGGTGGAAGAGATTAAAGCCCTG
GGGTCCGAGGCCGTGGCCATTAAGGCCAACTATGCGGCGGCTAAAGGCGG
TGTCCTGGGCCTGACTAAGGCCAACGCCAAGGAGTTCGCGGCGCGTGGGG
TGACGGTCAACGCGGTCTGCCCCGGGTTCATCGAGAGTGACATGACAGAA
AAGCTGGACTTAGACGGAATCAAGAAGGCGATCCCGTTGGGGAGGCTGGG
GAAGTCGAGCGAGGTGGCCGGCATGGTGCGTTTCTTGGCGATTGACCCGG
CGGCGCTGTACATCACAGGTCATTCCTTTGACGTTGATGGGGGGATTGCG
ATTGGCTCGACTTAAGCCTGGTCCTGACCATGAAGCCCGAGAACTGGCAA
GCCGTGATCGATATCAATCTTTCCGGTGTTTTCTACGCCTCCAAGGCTGC
CGCGTCCGTCATGCTCCGAGCCCGGCGCGGCCGCATCATCAACATGGCCT
CGGTTGTCGGCCAGATCGGGAATCCTGGACAGGCCGATATGTCCAAGCCC
GCCGAGGTGGATGCCCTGTTCAAGGAGACCGCCGCGGCCTTCAAGGACCC
CGTATCCATTCTTGTCAATAACGCCGGCATCACCAAGGACGATGGCGGCG
GCAGCCGGCGAAAAGGTGGATGTGGCCATTGTGACAGGAGGATCTCGCGG
GATCGGCAAAGCCTGCGCGTTGGAGCTCGCCAAGTACGGTGTGAAGGTGG
TGGTGAACTACGCCTCCTCGGCCGAGTCTGCTCTGGCCGTGGTGGAAGAG
ATTAAAGCCCTGGGGTCCGAGGCCGTGGCCATTAAGGCCAACTATGCGGC
GGCTAAAGGCGGTGTCCTGGGCCTGACTAAGGCCAACGCCAAGGAGTTCG
CGGCGCGTGGGGTGACGGTCAACGCGGTCTGCCCCGGGTTCATCGAGAGT
GACATGACAGAAAAGCTGGACTTAGACGGAATCAAGAAGGCGATCCCGTT
GGGGAGGCTGGGGAAGTCGAGCGAGGTGGCCGGCATGGTGCGTTTCTTGG
CGATTGACCCGGCGGCGCTGTACATCACAGGTCATTCCTTTGACGTTGAT
GGGGGGATTGCGATTGGCTCGACTTAAGCCTGGTCCTGACCATGAAGCCC
GAGAACTGGCAAGCCGTGATCGATATCAATCTTTCCGGTGTTTTCTACGC
CTCCAAGGCTGCCGCGTCCGTCATGCTCCGAGCCCGGCGCGGCCGCATCA
TCAACATGGCCTCGGTTGTCGGCCAGATCGGGAATCCTGGACAGGCCGAT
ATGTCCAAGCCCGCCGAGGTGGATGCCCTGTTCAAGGAGACCGCCGCGGC
CTTCAAGGACCCCGTATCCATTCTTGTCAATAACGCCGGCATCACCAAGG
ACGATGGCGGCGGCAGCCGGCGAAAAGGTGGATGTGGCCATTGTGACAGG
AGGATCTCGCGGGATCGGCAAAGCCTGCGCGTTGGAGCTCGCCAAGTACG
GTGTGAAGGTGGTGGTGAACTACGCCTCCTCGGCCGAGTCTGCTCTGGCC
GTGGTGGAAGAGATTAAAGCCCTGGGGTCCGAGGCCGTGGCCATTAAG
back to top
Synonyms
Publications