jgi.p|Nanoce1779_2|71460, mRNA_5576 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|71460
Unique NamemRNA_5576
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length510
Alignment locationscaffold_13:807648..808157 -

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Properties
Property NameValue
TranscriptId71546
TrackFilteredModels2
ProteinId71460
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:807648..808157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|71460gene_5576Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|71460mRNA_5576-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5576CDS_5576Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5576 ID=mRNA_5576|Name=jgi.p|Nanoce1779_2|71460|organism=Nannochloropsis oceanica|type=mRNA|length=510bp
GGGGCAGCAGCGTTCTTGCCTTTCTTTTTATTCGATTCGTGGGGTCGATT
TCCCAACTTCTTTCCTGCTTGCCGCAATGTCGTTGTCGGCATCAATTTTG
GTCGTTTCCTCCTCTGAGGCACCATCGAGTACTGGAGCGGGTCATGGGTC
TTTATCGCTCCTCTTGCTTGGTTACTTATTAATGTTGAAGATACTCAATT
CCCTCATCTTTTCCGCTTACTCCCTCTATTTCGTCTGCGCCCTCTTCGTT
TTTCGTGCTAGTGCGCCCCTTTCGTCTGTCTGCATGATGGAGCTCACTAT
TTTGACTAGAATTGTAAGGAGGGAAAAGATCCAAAGGCCACGTGGCTTCC
TCTCCTTCCTCTCCACCCGCCCAAATTACCTGCAATCCATCCCCCTCCAA
ATGGCCTGTTAACCACAAACCCTGGGCAAGAAATGAATATAGAGACACGA
CAAATGATTAAAAGAACCCTTCGCCTTCATTCCTCCCTTCCTTCAGGTCT
TTTCGTTGTC
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protein sequence of jgi.p|Nanoce1779_2|71460

>mRNA_5576-protein ID=mRNA_5576-protein|Name=jgi.p|Nanoce1779_2|71460|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MSLSASILVVSSSEAPSSTGAGHGSLSLLLLGYLLMLKILNSLIFSAYSL
YFVCALFVFRASAPLSSVCMMELTILTRIVRREKIQRPRGFLSFLSTRPN
YLQSIPLQMAC*
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mRNA from alignment at scaffold_13:807648..808157-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5576 ID=mRNA_5576|Name=jgi.p|Nanoce1779_2|71460|organism=Nannochloropsis oceanica|type=mRNA|length=510bp|location=Sequence derived from alignment at scaffold_13:807648..808157- (Nannochloropsis oceanica)
GGGGCAGCAGCGTTCTTGCCTTTCTTTTTATTCGATTCGTGGGGTCGATT TCCCAACTTCTTTCCTGCTTGCCGCAATGTCGTTGTCGGCATCAATTTTG GTCGTTTCCTCCTCTGAGGCACCATCGAGTACTGGAGCGGGTCATGGGTC TTTATCGCTCCTCTTGCTTGGTTACTTATTAATGTTGAAGATACTCAATT CCCTCATCTTTTCCGCTTACTCCCTCTATTTCGTCTGCGCCCTCTTCGTT TTTCGTGCTAGTGCGCCCCTTTCGTCTGTCTGCATGATGGAGCTCACTAT TTTGACTAGAATTGTAAGGAGGGAAAAGATCCAAAGGCCACGTGGCTTCC TCTCCTTCCTCTCCACCCGCCCAAATTACCTGCAATCCATCCCCCTCCAA ATGGCCTGTTAACCACAAACCCTGGGCAAGAAATGAATATAGAGACACGA CAAATGATTAAAAGAACCCTTCGCCTTCATTCCTCCCTTCCTTCAGGTCT TTTCGTTGTC
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Coding sequence (CDS) from alignment at scaffold_13:807648..808157-

>mRNA_5576 ID=mRNA_5576|Name=jgi.p|Nanoce1779_2|71460|organism=Nannochloropsis oceanica|type=CDS|length=336bp|location=Sequence derived from alignment at scaffold_13:807648..808157- (Nannochloropsis oceanica)
ATGTCGTTGTCGGCATCAATTTTGGTCGTTTCCTCCTCTGAGGCACCATC
GAGTACTGGAGCGGGTCATGGGTCTTTATCGCTCCTCTTGCTTGGTTACT
TATTAATGTTGAAGATACTCAATTCCCTCATCTTTTCCGCTTACTCCCTC
TATTTCGTCTGCGCCCTCTTCGTTTTTCGTGCTAGTGCGCCCCTTTCGTC
TGTCTGCATGATGGAGCTCACTATTTTGACTAGAATTGTAAGGAGGGAAA
AGATCCAAAGGCCACGTGGCTTCCTCTCCTTCCTCTCCACCCGCCCAAAT
TACCTGCAATCCATCCCCCTCCAAATGGCCTGTTAA
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Synonyms
Publications