jgi.p|Nanoce1779_2|593027, mRNA_5574 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593027
Unique NamemRNA_5574
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length467
Alignment locationscaffold_13:803500..803966 -

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Properties
Property NameValue
TranscriptId593113
TrackFilteredModels2
ProteinId593027
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:803500..803966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593027gene_5574Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593027mRNA_5574-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5574CDS_5574Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5574 ID=mRNA_5574|Name=jgi.p|Nanoce1779_2|593027|organism=Nannochloropsis oceanica|type=mRNA|length=467bp
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGATGATGATGCTGCTGCTGAGG
GTGGCCATACATGGGCGCCCCGTAATGAGGCGGTGGCGGTGGTTGGGACA
TGGCTGCTACCTATGGATGGGTGCGAAAGGGTGGATGGTTGGAGAAGGCG
TGGGTTGGGGTGTGAAGAGCATAGAAGACAGTTTCCCGTTGGTATGGGCG
ATTGTGATGATGGTAGAGCTGTTGTTGCCCAAGAGCAGGCAAACTCCCTC
TCAAACACTCGACATGATAGATCATGGGGTCAAAGTGCCATGAGACACTG
ACCAGGCGAAGGCGCAACACCCACAGGAACAAACCCTACGTCGCTAAAGA
AGGCTTGGTTTGAAAGTCTCTGGGCATCACTGTGCGACCACCCATGACCA
ACTGGCAGCAATCAGTGCCACCCCAATGACTAGGAACTTGCAAACGTACA
ACAGAGAGACTACCTGT
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protein sequence of jgi.p|Nanoce1779_2|593027

>mRNA_5574-protein ID=mRNA_5574-protein|Name=jgi.p|Nanoce1779_2|593027|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MMMLLLRVAIHGRPVMRRWRWLGHGCYLWMGAKGWMVGEGVGWGVKSIED
SFPLVWAIVMMVELLLPKSRQTPSQTLDMIDHGVKVP*
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mRNA from alignment at scaffold_13:803500..803966-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5574 ID=mRNA_5574|Name=jgi.p|Nanoce1779_2|593027|organism=Nannochloropsis oceanica|type=mRNA|length=467bp|location=Sequence derived from alignment at scaffold_13:803500..803966- (Nannochloropsis oceanica)
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGATGATGATGCTGCTGCTGAGG
GTGGCCATACATGGGCGCCCCGTAATGAGGCGGTGGCGGTGGTTGGGACA
TGGCTGCTACCTATGGATGGGTGCGAAAGGGTGGATGGTTGGAGAAGGCG
TGGGTTGGGGTGTGAAGAGCATAGAAGACAGTTTCCCGTTGGTATGGGCG
ATTGTGATGATGGTAGAGCTGTTGTTGCCCAAGAGCAGGCAAACTCCCTC
TCAAACACTCGACATGATAGATCATGGGGTCAAAGTGCCATGAGACACTG
ACCAGGCGAAGGCGCAACACCCACAGGAACAAACCCTACGTCGCTAAAGA
AGGCTTGGTTTGAAAGTCTCTGGGCATCACTGTGCGACCACCCATGACCA
ACTGGCAGCAATCAGTGCCACCCCAATGACTAGGAACTTGCAAACGTACA
ACAGAGAGACTACCTGT
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Coding sequence (CDS) from alignment at scaffold_13:803500..803966-

>mRNA_5574 ID=mRNA_5574|Name=jgi.p|Nanoce1779_2|593027|organism=Nannochloropsis oceanica|type=CDS|length=264bp|location=Sequence derived from alignment at scaffold_13:803500..803966- (Nannochloropsis oceanica)
ATGATGATGCTGCTGCTGAGGGTGGCCATACATGGGCGCCCCGTAATGAG
GCGGTGGCGGTGGTTGGGACATGGCTGCTACCTATGGATGGGTGCGAAAG
GGTGGATGGTTGGAGAAGGCGTGGGTTGGGGTGTGAAGAGCATAGAAGAC
AGTTTCCCGTTGGTATGGGCGATTGTGATGATGGTAGAGCTGTTGTTGCC
CAAGAGCAGGCAAACTCCCTCTCAAACACTCGACATGATAGATCATGGGG
TCAAAGTGCCATGA
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Synonyms
Publications