jgi.p|Nanoce1779_2|593026, mRNA_5573 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593026
Unique NamemRNA_5573
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length553
Alignment locationscaffold_13:803023..803575 +

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Properties
Property NameValue
TranscriptId593112
TrackFilteredModels2
ProteinId593026
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:803023..803575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593026gene_5573Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593026mRNA_5573-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5573CDS_5573Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5573 ID=mRNA_5573|Name=jgi.p|Nanoce1779_2|593026|organism=Nannochloropsis oceanica|type=mRNA|length=553bp
TTACTGCTGCTGCTGCCTGATGATTTAGGCGACGCCGCGGATGAGTCTGT
GATTGTAGAGATGCATGGGTTGGTGGAAGTGCTTTGCGGGAGGGACAAAT
ACGGGCAGTATCATCATTCCATGCAGAAAGGTACTCCTCATAAAGGAGGA
GTGAGAATGGAGGGGACATGTGTAAAGGGCGAGTGAGGCAAAGAAGCTGC
CCGCCACACGTCGAGAAGACACACCTTACAACGGTACTGTTGTTGGTGGG
TTTGCCTGTAATTAGATGCCATAGCATGTGTGAGGTGAGAGGGTCACAAG
AACACCAGGGCGCCGCTTGTTTGGTTGGTTTGTTCGCGCCTTTCTTGTCT
TCATTATTTCGATTTCATCAATCATCATAACAGGCCGTAAGAAGTCGAGG
AGAGGCAGGAAGCCCAGCAAAAAACCAGCCGCAACCAGATTACCCCGTTA
AACCCTGCACCTCTCCTCACACGTTATACAGGTAGTCTCTCTGTTGTACG
TTTGCAAGTTCCTAGTCATTGGGGTGGCACTGATTGCTGCCAGTTGGTCA
TGG
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protein sequence of jgi.p|Nanoce1779_2|593026

>mRNA_5573-protein ID=mRNA_5573-protein|Name=jgi.p|Nanoce1779_2|593026|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MCKGRVRQRSCPPHVEKTHLTTVLLLVGLPVIRCHSMCEVRGSQEHQGAA
CLVGLFAPFLSSLFRFHQSS*
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mRNA from alignment at scaffold_13:803023..803575+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5573 ID=mRNA_5573|Name=jgi.p|Nanoce1779_2|593026|organism=Nannochloropsis oceanica|type=mRNA|length=553bp|location=Sequence derived from alignment at scaffold_13:803023..803575+ (Nannochloropsis oceanica)
TTACTGCTGCTGCTGCCTGATGATTTAGGCGACGCCGCGGATGAGTCTGT
GATTGTAGAGATGCATGGGTTGGTGGAAGTGCTTTGCGGGAGGGACAAAT
ACGGGCAGTATCATCATTCCATGCAGAAAGGTACTCCTCATAAAGGAGGA
GTGAGAATGGAGGGGACATGTGTAAAGGGCGAGTGAGGCAAAGAAGCTGC
CCGCCACACGTCGAGAAGACACACCTTACAACGGTACTGTTGTTGGTGGG
TTTGCCTGTAATTAGATGCCATAGCATGTGTGAGGTGAGAGGGTCACAAG
AACACCAGGGCGCCGCTTGTTTGGTTGGTTTGTTCGCGCCTTTCTTGTCT
TCATTATTTCGATTTCATCAATCATCATAACAGGCCGTAAGAAGTCGAGG
AGAGGCAGGAAGCCCAGCAAAAAACCAGCCGCAACCAGATTACCCCGTTA
AACCCTGCACCTCTCCTCACACGTTATACAGGTAGTCTCTCTGTTGTACG
TTTGCAAGTTCCTAGTCATTGGGGTGGCACTGATTGCTGCCAGTTGGTCA
TGG
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Coding sequence (CDS) from alignment at scaffold_13:803023..803575+

>mRNA_5573 ID=mRNA_5573|Name=jgi.p|Nanoce1779_2|593026|organism=Nannochloropsis oceanica|type=CDS|length=213bp|location=Sequence derived from alignment at scaffold_13:803023..803575+ (Nannochloropsis oceanica)
ATGTGTAAAGGGCGAGTGAGGCAAAGAAGCTGCCCGCCACACGTCGAGAA
GACACACCTTACAACGGTACTGTTGTTGGTGGGTTTGCCTGTAATTAGAT
GCCATAGCATGTGTGAGGTGAGAGGGTCACAAGAACACCAGGGCGCCGCT
TGTTTGGTTGGTTTGTTCGCGCCTTTCTTGTCTTCATTATTTCGATTTCA
TCAATCATCATAA
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Synonyms
Publications