jgi.p|Nanoce1779_2|648776, mRNA_5565 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|648776
Unique NamemRNA_5565
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1332
Alignment locationscaffold_13:770860..772191 -

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Properties
Property NameValue
TranscriptId648862
TrackFilteredModels2
ProteinId648776
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:770860..772191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|648776gene_5565Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|648776mRNA_5565-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5565CDS_5565Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5565 ID=mRNA_5565|Name=jgi.p|Nanoce1779_2|648776|organism=Nannochloropsis oceanica|type=mRNA|length=1332bp
TGGATGAAGCGAGGGTGTGGGTTTGGTGAGCAGGAAGCAAGCAGTGTGTG
TGAAGTTGCTGTTGGCGGCGGAAGCGAAGCTGTGGTGGCCATGAGAGGGA
GGATCACAAGTCATAAAATAAGCTTTGCTAAGACACAAGAGGTATCAACC
CACACACGCTATCACAGCACACAATCCATTACTCTCTACAACACACGTGC
CGCAGGCCAATGTGGCTTGGGTGTTTCCAAATAGCGTAAAAAACAAATCA
TCAAATCAGGCAAAGCCTCTCCTTGCTTCAACGGGCGGCTACGTTCACCT
CCCCTATCCCAAGCACCCTCTTAAGAGAGTCTCTTTCCGCCTTTACTCAT
AAGATACCGCTGCGCGTCACCCCCTCACGTTATACCCATCATCTTCTTCT
CCTCTCTCTTCTCAACCCGTCGGATAGGAGAAAAAAAGCTGCCGACATCA
ACACTATGAGCCCTTCCCCTCCACCTCCTTCCCAGAACCTTTTGGCGGCA
GTAGAGGAAGAGTGTGAGCACGCCGCCTGCAAGACTATGCTGGACGTGCT
CAAGAGCGCTGCAGGCATGCCGAGCTCCACCAAAGGTAATGCCACGAGGA
AGTCCTCCGAGTCATCACCCTCTGTGTCCTCCCCTGCAGACGAAGCCGCC
TGGCGCAAGGCTCACTGCCCTCTAGACATAAATGCCTTGGGCGACGCCAC
GTGGGGCATGCTCCACTCCACTGCTGCATATTACCCCGACAATCCCACAC
CTCAAGAGCAGTCCCTTGCTGCTGGTTTGATCCATGGCATTGCTGGCCTT
TACCCGTGCACGCACTGTCGCAAGGACTTTCAGGCCTGTGTCAAGGAGGC
CCCACCAAGGGTTGAAAACCGAGAGGCCTTTGCTGTATGGGTGTGCGAGC
AGCATAATGCGGTGAACGACAAGTTAGGTAAATCATTGTTTCCGTGTAAT
CTTGCCACATTGGACAAGAGGTGGAGGAAGGGGGAAGCTCGATGTTGGGG
GGAAGAGGAAGGAGAAGGAGTAGGAGGAGGAGGAGTTGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
CTAACAAGGATAAAGACGAAGCAACAATCGCCAGCGTCATTTGTGAGCAG
CATTAATAGTAGCAAGAAAGAAAAAATCTATGTTATCGAGCCCGGGGAAG
GGAAGAAAAAGGCGGCGCCTTGAGTTGCGACTGTGAGAGCGATGTGTGGA
GTGGATCATAAAACGGGAGCGGGGAGGGAGAGAGAGGATGCAATCTATCG
AGAGAATTCGGTAGTGGAAGACGGGCGGAAAA
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protein sequence of jgi.p|Nanoce1779_2|648776

>mRNA_5565-protein ID=mRNA_5565-protein|Name=jgi.p|Nanoce1779_2|648776|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MSPSPPPPSQNLLAAVEEECEHAACKTMLDVLKSAAGMPSSTKGNATRKS
SESSPSVSSPADEAAWRKAHCPLDINALGDATWGMLHSTAAYYPDNPTPQ
EQSLAAGLIHGIAGLYPCTHCRKDFQACVKEAPPRVENREAFAVWVCEQH
NAVNDKLGKSLFPCNLATLDKRWRKGEARCWGEEEGEGVGGGGVGGGGGG
GGGGGRGGGGGGGGGLTRIKTKQQSPASFVSSINSSKKEKIYVIEPGEGK
KKAAP*
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mRNA from alignment at scaffold_13:770860..772191-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5565 ID=mRNA_5565|Name=jgi.p|Nanoce1779_2|648776|organism=Nannochloropsis oceanica|type=mRNA|length=1332bp|location=Sequence derived from alignment at scaffold_13:770860..772191- (Nannochloropsis oceanica)
TGGATGAAGCGAGGGTGTGGGTTTGGTGAGCAGGAAGCAAGCAGTGTGTG
TGAAGTTGCTGTTGGCGGCGGAAGCGAAGCTGTGGTGGCCATGAGAGGGA
GGATCACAAGTCATAAAATAAGCTTTGCTAAGACACAAGAGGTATCAACC
CACACACGCTATCACAGCACACAATCCATTACTCTCTACAACACACGTGC
CGCAGGCCAATGTGGCTTGGGTGTTTCCAAATAGCGTAAAAAACAAATCA
TCAAATCAGGCAAAGCCTCTCCTTGCTTCAACGGGCGGCTACGTTCACCT
CCCCTATCCCAAGCACCCTCTTAAGAGAGTCTCTTTCCGCCTTTACTCAT
AAGATACCGCTGCGCGTCACCCCCTCACGTTATACCCATCATCTTCTTCT
CCTCTCTCTTCTCAACCCGTCGGATAGGAGAAAAAAAGCTGCCGACATCA
ACACTATGAGCCCTTCCCCTCCACCTCCTTCCCAGAACCTTTTGGCGGCA
GTAGAGGAAGAGTGTGAGCACGCCGCCTGCAAGACTATGCTGGACGTGCT
CAAGAGCGCTGCAGGCATGCCGAGCTCCACCAAAGGTAATGCCACGAGGA
AGTCCTCCGAGTCATCACCCTCTGTGTCCTCCCCTGCAGACGAAGCCGCC
TGGCGCAAGGCTCACTGCCCTCTAGACATAAATGCCTTGGGCGACGCCAC
GTGGGGCATGCTCCACTCCACTGCTGCATATTACCCCGACAATCCCACAC
CTCAAGAGCAGTCCCTTGCTGCTGGTTTGATCCATGGCATTGCTGGCCTT
TACCCGTGCACGCACTGTCGCAAGGACTTTCAGGCCTGTGTCAAGGAGGC
CCCACCAAGGGTTGAAAACCGAGAGGCCTTTGCTGTATGGGTGTGCGAGC
AGCATAATGCGGTGAACGACAAGTTAGGTAAATCATTGTTTCCGTGTAAT
CTTGCCACATTGGACAAGAGGTGGAGGAAGGGGGAAGCTCGATGTTGGGG
GGAAGAGGAAGGAGAAGGAGTAGGAGGAGGAGGAGTTGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
CTAACAAGGATAAAGACGAAGCAACAATCGCCAGCGTCATTTGTGAGCAG
CATTAATAGTAGCAAGAAAGAAAAAATCTATGTTATCGAGCCCGGGGAAG
GGAAGAAAAAGGCGGCGCCTTGAGTTGCGACTGTGAGAGCGATGTGTGGA
GTGGATCATAAAACGGGAGCGGGGAGGGAGAGAGAGGATGCAATCTATCG
AGAGAATTCGGTAGTGGAAGACGGGCGGAAAA
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Coding sequence (CDS) from alignment at scaffold_13:770860..772191-

>mRNA_5565 ID=mRNA_5565|Name=jgi.p|Nanoce1779_2|648776|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at scaffold_13:770860..772191- (Nannochloropsis oceanica)
ATGAGCCCTTCCCCTCCACCTCCTTCCCAGAACCTTTTGGCGGCAGTAGA
GGAAGAGTGTGAGCACGCCGCCTGCAAGACTATGCTGGACGTGCTCAAGA
GCGCTGCAGGCATGCCGAGCTCCACCAAAGGTAATGCCACGAGGAAGTCC
TCCGAGTCATCACCCTCTGTGTCCTCCCCTGCAGACGAAGCCGCCTGGCG
CAAGGCTCACTGCCCTCTAGACATAAATGCCTTGGGCGACGCCACGTGGG
GCATGCTCCACTCCACTGCTGCATATTACCCCGACAATCCCACACCTCAA
GAGCAGTCCCTTGCTGCTGGTTTGATCCATGGCATTGCTGGCCTTTACCC
GTGCACGCACTGTCGCAAGGACTTTCAGGCCTGTGTCAAGGAGGCCCCAC
CAAGGGTTGAAAACCGAGAGGCCTTTGCTGTATGGGTGTGCGAGCAGCAT
AATGCGGTGAACGACAAGTTAGGTAAATCATTGTTTCCGTGTAATCTTGC
CACATTGGACAAGAGGTGGAGGAAGGGGGAAGCTCGATGTTGGGGGGAAG
AGGAAGGAGAAGGAGTAGGAGGAGGAGGAGTTGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGACTAAC
AAGGATAAAGACGAAGCAACAATCGCCAGCGTCATTTGTGAGCAGCATTA
ATAGTAGCAAGAAAGAAAAAATCTATGTTATCGAGCCCGGGGAAGGGAAG
AAAAAGGCGGCGCCTTGA
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Synonyms
Publications