jgi.p|Nanoce1779_2|623492, mRNA_5563 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|623492
Unique NamemRNA_5563
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length591
Alignment locationscaffold_13:754862..755452 -

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Properties
Property NameValue
TranscriptId623578
TrackFilteredModels2
ProteinId623492
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:754862..755452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|623492gene_5563Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5563CDS_5563Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|623492mRNA_5563-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5563 ID=mRNA_5563|Name=jgi.p|Nanoce1779_2|623492|organism=Nannochloropsis oceanica|type=mRNA|length=591bp
ATGCCGGGTTTGGAGGGGCTGCCCAAGTCATTGCTCAGCTTGGATGTGGA
CGGGCGCGTAATTCACTTGGAATCCTTGTCGAAATGGGTGTGTCCTGGTT
TACGCCTCGGGTGGCTCACGGGTCCCAAGGCGTTCGTGGAGGGCGCGTAT
CGGAAGTGGAACGAGCTAACCATCCAGTTTCCCTGCACAGTCTCGCAATC
TGTGTTTTGTTCGATGCTCAAGCAGTGGGGCCATGCCGGATTGGACGCAC
ATTTGAAACAGTTACAAGCGCACTACGCGCGGCAACGACGCGCGATGCAT
CACGCTGCAGAGAAGCACTTGCGAGGACTTGCAACTTGGGACTTGCCCAA
GGCAGGTATGTTTGTGCTGTTCAAGGTGACAGCGCTGAGGGGGAAGGGAA
AGGCGGAGACAGAGGCGGTGTTGGAGGGTTTGTTGGCGGAGGACATATTG
ATGGTACCAGGGTACGCGTTTGACCCGTCACCAGGCAAGGATGCAGAGCC
TGCATTCCGCGCGACATTTGCGACGGCGAGTCCGGAGAAGATTGAGGAGG
GGCTTGCAAGGTTCGCCCGGGCATTGGCACGCTTGACTTAA
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protein sequence of jgi.p|Nanoce1779_2|623492

>mRNA_5563-protein ID=mRNA_5563-protein|Name=jgi.p|Nanoce1779_2|623492|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MPGLEGLPKSLLSLDVDGRVIHLESLSKWVCPGLRLGWLTGPKAFVEGAY
RKWNELTIQFPCTVSQSVFCSMLKQWGHAGLDAHLKQLQAHYARQRRAMH
HAAEKHLRGLATWDLPKAGMFVLFKVTALRGKGKAETEAVLEGLLAEDIL
MVPGYAFDPSPGKDAEPAFRATFATASPEKIEEGLARFARALARLT*
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mRNA from alignment at scaffold_13:754862..755452-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5563 ID=mRNA_5563|Name=jgi.p|Nanoce1779_2|623492|organism=Nannochloropsis oceanica|type=mRNA|length=591bp|location=Sequence derived from alignment at scaffold_13:754862..755452- (Nannochloropsis oceanica)
ATGCCGGGTTTGGAGGGGCTGCCCAAGTCATTGCTCAGCTTGGATGTGGA
CGGGCGCGTAATTCACTTGGAATCCTTGTCGAAATGGGTGTGTCCTGGTT
TACGCCTCGGGTGGCTCACGGGTCCCAAGGCGTTCGTGGAGGGCGCGTAT
CGGAAGTGGAACGAGCTAACCATCCAGTTTCCCTGCACAGTCTCGCAATC
TGTGTTTTGTTCGATGCTCAAGCAGTGGGGCCATGCCGGATTGGACGCAC
ATTTGAAACAGTTACAAGCGCACTACGCGCGGCAACGACGCGCGATGCAT
CACGCTGCAGAGAAGCACTTGCGAGGACTTGCAACTTGGGACTTGCCCAA
GGCAGGTATGTTTGTGCTGTTCAAGGTGACAGCGCTGAGGGGGAAGGGAA
AGGCGGAGACAGAGGCGGTGTTGGAGGGTTTGTTGGCGGAGGACATATTG
ATGGTACCAGGGTACGCGTTTGACCCGTCACCAGGCAAGGATGCAGAGCC
TGCATTCCGCGCGACATTTGCGACGGCGAGTCCGGAGAAGATTGAGGAGG
GGCTTGCAAGGTTCGCCCGGGCATTGGCACGCTTGACTTAA
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Coding sequence (CDS) from alignment at scaffold_13:754862..755452-

>mRNA_5563 ID=mRNA_5563|Name=jgi.p|Nanoce1779_2|623492|organism=Nannochloropsis oceanica|type=CDS|length=591bp|location=Sequence derived from alignment at scaffold_13:754862..755452- (Nannochloropsis oceanica)
ATGCCGGGTTTGGAGGGGCTGCCCAAGTCATTGCTCAGCTTGGATGTGGA
CGGGCGCGTAATTCACTTGGAATCCTTGTCGAAATGGGTGTGTCCTGGTT
TACGCCTCGGGTGGCTCACGGGTCCCAAGGCGTTCGTGGAGGGCGCGTAT
CGGAAGTGGAACGAGCTAACCATCCAGTTTCCCTGCACAGTCTCGCAATC
TGTGTTTTGTTCGATGCTCAAGCAGTGGGGCCATGCCGGATTGGACGCAC
ATTTGAAACAGTTACAAGCGCACTACGCGCGGCAACGACGCGCGATGCAT
CACGCTGCAGAGAAGCACTTGCGAGGACTTGCAACTTGGGACTTGCCCAA
GGCAGGTATGTTTGTGCTGTTCAAGGTGACAGCGCTGAGGGGGAAGGGAA
AGGCGGAGACAGAGGCGGTGTTGGAGGGTTTGTTGGCGGAGGACATATTG
ATGGTACCAGGGTACGCGTTTGACCCGTCACCAGGCAAGGATGCAGAGCC
TGCATTCCGCGCGACATTTGCGACGGCGAGTCCGGAGAAGATTGAGGAGG
GGCTTGCAAGGTTCGCCCGGGCATTGGCACGCTTGACTTAA
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Synonyms
Publications