jgi.p|Nanoce1779_2|592974, mRNA_5562 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592974
Unique Name	mRNA_5562
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1586
Alignment location	scaffold_13:752593..754508 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	593060
Track	FilteredModels2
ProteinId	592974

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:752593..754508 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592974	gene_5562	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592974	mRNA_5562-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5562	CDS_5562	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:752593..754508+
coding sequence from alignment at scaffold_13:752593..754508+

mRNA sequence

>mRNA_5562 ID=mRNA_5562|Name=jgi.p|Nanoce1779_2|592974|organism=Nannochloropsis oceanica|type=mRNA|length=1586bp
AGTCGTTGTTTGGCCAGCCGCAAAAGCCAACTTCAAAATCCTCGACCGAC
AAGTAACTGGTCCACTGAAACCATGAGTCTATGTGGCTGGTTTTCCCGCA
TGGAGACCAATGCCAAAGCTATCTTTCTTTCCCGGCTATCATGGCTCCTT
TCCTTCTCTCTGATCTGGGTTGGTCTCTTGACCGAAGGCTGGCAACTCGT
CAAGCTCCAAGGCTTCGGAATCCAAGAGACCGTCCAATATGGCCTCTGGC
GCATCAGATATACCGGTACCTACACCTACACCTCTGACTTCATCGACTGG
GAGCCCGAGGTTGCCGAGATTGATGCAACAGCTTACCCCCGCGTGCAAGC
CACCCGTGCCTGCATCGTCCTGGCCCTCATGGCCCTAAGCCTCCAATTCC
TGGTCGCCCTCCGTGGGTATTGTGCTCGGTCCTATAAAGTGCAGAGAGTG
TGCACTATCTCCTGTGCGGCATATGCGTCAGCTGATCTTGCCTTTACACT
CTCTGCTATCCTGGTCTGGAAGTCCATCTCGGAGGAGGCCTTCCATGTCG
TGTGCTCGAGGGAGGGCTGCAGTGTCTCCCCCCTTGAAGCAGATGCATTT
CAAATGACGCCTTACTACGCTTGGGGTTTTACCATCGTCAAACTAATATT
GTCCTTCCCGGGGGTGGTCTCATTGATTTACCTTGGTATTGTTTCTTCAT
CCTCGTCCTCCTCTCAAACAGCAACGGAGATGCCCGTGGTGACTGCTGTA
GGGGGAACTGCTGCTAATGCTGTTGCGTCGAGGAATGGAGGGAAAAGGGG
GGGAAAGTTAGCTGAAATTGAGCAGGCGGAAGACAATGCAATTATTGGAC
AGGAGGAGGGGAGTAGAGGGTCACCCAAGACTGCAGACAGTTTTGGCAGT
ACAGACAGCAAGAAGATTGGTGGTAAGAAGGGAAATGGAGACGTGTTCGA
TAGGAACGCACATGTATCGTACATTTTGGGGGGGGCAACAGGGGATCCTA
ATCCGGCATGGCTAAATCCGTAGAGCGATGAAGGGAGGAAAGGAGGGGGG
AAGGGTAAAGGGTGTTTGCAAGATCATAAGGTGAAATGAAAGACCGAAAT
AGAGATGCTTTTGTAATTATAGGATTGTATTGCGTGTGAGCGGCAACCTC
CCTTCATACGGAAAGATGTATGAAAAAGAGACGGACAGCATGGCGTAAGA
TCATAAATGAAAGAGAGATAGACGGTATGGAATTTTGGGTTGTAGGGGTG
GTAGAGAAGTTGGGAACGAGGAGACGCGAAGCACAATGGGTGGACTTAAA
CACGGCAGTCGAAAGGGAGCACCGCTTGAGTCGATTAGCATATAATAGAG
TTTGTGAATAAGCTATACCTTCTCCTGTCATCCTTCGTCGCATGGTGAGA
GAGTAAGATCAAACGCGTCTCAACTAAGTGTACAAAAGAGATCTGTTTGA
GAGGTAGAGTACCCATCACGGAACAAAACCTGTCCACAGCCATTATCAGT
CGCACCAATTTCAGAAGCATAATGGCAATGGTAAACGACGACAAAGGAAG
AGGAAGAAAAAGTAATGCAAACAGTGGGGTCATCTA

protein sequence of jgi.p|Nanoce1779_2|592974

>mRNA_5562-protein ID=mRNA_5562-protein|Name=jgi.p|Nanoce1779_2|592974|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MSLCGWFSRMETNAKAIFLSRLSWLLSFSLIWVGLLTEGWQLVKLQGFGI
QETVQYGLWRIRYTGTYTYTSDFIDWEPEVAEIDATAYPRVQATRACIVL
ALMALSLQFLVALRGYCARSYKVQRVCTISCAAYASADLAFTLSAILVWK
SISEEAFHVVCSREGCSVSPLEADAFQMTPYYAWGFTIVKLILSFPGVVS
LIYLGIVSSSSSSSQTATEMPVVTAVGGTAANAVASRNGGKRGGKLAEIE
QAEDNAIIGQEEGSRGSPKTADSFGSTDSKKIGGKKGNGDVFDRNAHVSY
ILGGATGDPNPAWLNP*

mRNA from alignment at scaffold_13:752593..754508+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5562 ID=mRNA_5562|Name=jgi.p|Nanoce1779_2|592974|organism=Nannochloropsis oceanica|type=mRNA|length=1916bp|location=Sequence derived from alignment at scaffold_13:752593..754508+ (Nannochloropsis oceanica)
AGTCGTTGTTTGGCCAGCCGCAAAAGCCAACTTCAAAATCCTCGACCGAC
AAGTAACTGGTCCACTGAAACCATGAGTCTATGTGGCTGGTTTTCCCGCA
TGGAGACCAATGCCAAAGCTATCTTTCTTTGTAAGTCTCCCTCTTCCTGA
ATGTCTGCTCTTGGTGGACGCCATTGCAGCATGCTGTGTCATTATGGGGC
CTGACGTTCACAATTATTGGGTCCTGGTCGCATCGGCAAATCACTTCCCT
CTCCAATATCTACACATCCACACTCCACAGCCCGGCTATCATGGCTCCTT
TCCTTCTCTCTGATCTGGGTTGGTCTCTTGACCGAAGGTACGTGAATGCA
TGCTCAGTGTGTCTCTTCGTATGCTTTAGTCCTAATTCATCCTTTGACGG
GTGTCCATCCCTATCGTAGTCCTTTCTCACATGTTTGCTTTGCTTCCACC
ATTTCTCAGCCTTTCATATCCCTCTTTTCCCCATTCTCATCACCCAATGA
ACCCAACCCTTTCACAGGCTGGCAACTCGTCAAGCTCCAAGGCTTCGGAA
TCCAAGAGACCGTCCAATATGGCCTCTGGCGCATCAGATATACCGGTACC
TACACCTACACCTCTGACTTCATCGACTGGGAGCCCGAGGTTGCCGAGAT
TGATGCAACAGCTTACCCCCGCGTGCAAGCCACCCGTGCCTGCATCGTCC
TGGCCCTCATGGCCCTAAGCCTCCAATTCCTGGTCGCCCTCCGTGGGTAT
TGTGCTCGGTCCTATAAAGTGCAGAGAGTGTGCACTATCTCCTGTGCGGC
ATATGCGTCAGCTGATCTTGCCTTTACACTCTCTGCTATCCTGGTCTGGA
AGTCCATCTCGGAGGAGGCCTTCCATGTCGTGTGCTCGAGGGAGGGCTGC
AGTGTCTCCCCCCTTGAAGCAGATGCATTTCAAATGACGCCTTACTACGC
TTGGGGTTTTACCATCGTCAAACTAATATTGTCCTTCCCGGGGGTGGTCT
CATTGATTTACCTTGGTATTGTTTCTTCATCCTCGTCCTCCTCTCAAACA
GCAACGGAGATGCCCGTGGTGACTGCTGTAGGGGGAACTGCTGCTAATGC
TGTTGCGTCGAGGAATGGAGGGAAAAGGGGGGGAAAGTTAGCTGAAATTG
AGCAGGCGGAAGACAATGCAATTATTGGACAGGAGGAGGGGAGTAGAGGG
TCACCCAAGACTGCAGACAGTTTTGGCAGTACAGACAGCAAGAAGATTGG
TGGTAAGAAGGGAAATGGAGACGTGTTCGATAGGAACGCACATGTATCGT
ACATTTTGGGGGGGGCAACAGGGGATCCTAATCCGGCATGGCTAAATCCG
TAGAGCGATGAAGGGAGGAAAGGAGGGGGGAAGGGTAAAGGGTGTTTGCA
AGATCATAAGGTGAAATGAAAGACCGAAATAGAGATGCTTTTGTAATTAT
AGGATTGTATTGCGTGTGAGCGGCAACCTCCCTTCATACGGAAAGATGTA
TGAAAAAGAGACGGACAGCATGGCGTAAGATCATAAATGAAAGAGAGATA
GACGGTATGGAATTTTGGGTTGTAGGGGTGGTAGAGAAGTTGGGAACGAG
GAGACGCGAAGCACAATGGGTGGACTTAAACACGGCAGTCGAAAGGGAGC
ACCGCTTGAGTCGATTAGCATATAATAGAGTTTGTGAATAAGCTATACCT
TCTCCTGTCATCCTTCGTCGCATGGTGAGAGAGTAAGATCAAACGCGTCT
CAACTAAGTGTACAAAAGAGATCTGTTTGAGAGGTAGAGTACCCATCACG
GAACAAAACCTGTCCACAGCCATTATCAGTCGCACCAATTTCAGAAGCAT
AATGGCAATGGTAAACGACGACAAAGGAAGAGGAAGAAAAAGTAATGCAA
ACAGTGGGGTCATCTA

Coding sequence (CDS) from alignment at scaffold_13:752593..754508+

>mRNA_5562 ID=mRNA_5562|Name=jgi.p|Nanoce1779_2|592974|organism=Nannochloropsis oceanica|type=CDS|length=2853bp|location=Sequence derived from alignment at scaffold_13:752593..754508+ (Nannochloropsis oceanica)
ATGAGTCTATGTGGCTGGTTTTCCCGCATGGAGACCAATGCCAAAGCTAT
CTTTCTTTCCCGGCTATCATGGCTCCTTTCCTTCTCTCTGATCTGGGTTG
GTCTCTTGACCGAAGGCTGGCAACTCGTCAAGCTCCAAGGCTTCGGAATC
CAAGAGACCGTCCAATATGGCCTCTGGCGCATCAGATATACCGGTACCTA
CACCTACACCTCTGACTTCATCGACTGGGAGCCCGAGGTTGCCGAGATTG
ATGCAACAGCTTACCCCCGCGTGCAAGCCACCCGTGCCTGCATCGTCCTG
GCCCTCATGGCCCTAAGCCTCCAATTCCTGGTCGCCCTCCGTGGGTATTG
TGCTCGGTCCTATAAAGTGCAGAGAGTGTGCACTATCTCCTGTGCGGCAT
ATGCGTCAGCTGATCTTGCCTTTACACTCTCTGCTATCCTGGTCTGGAAG
TCCATCTCGGAGGAGGCCTTCCATGTCGTGTGCTCGAGGGAGGGCTGCAG
TGTCTCCCCCCTTGAAGCAGATGCATTTCAAATGACGCCTTACTACGCTT
GGGGTTTTACCATCGTCAAACTAATATTGTCCTTCCCGGGGGTGGTCTCA
TTGATTTACCTTGGTATTGTTTCTTCATCCTCGTCCTCCTCTCAAACAGC
AACGGAGATGCCCGTGGTGACTGCTGTAGGGGGAACTGCTGCTAATGCTG
TTGCGTCGAGGAATGGAGGGAAAAGGGGGGGAAAGTTAGCTGAAATTGAG
CAGGCGGAAGACAATGCAATTATTGGACAGGAGGAGGGGAGTAGAGGGTC
ACCCAAGACTGCAGACAGTTTTGGCAGTACAGACAGCAAGAAGATTGGTG
GTAAGAAGGGAAATGGAGACGTGTTCGATAGGAACGCACATGTATCGTAC
ATTTTGGGGGGGGCAACAGGGGATCCTAATCCGGCATGGCTAAATCCGTA
GATGAGTCTATGTGGCTGGTTTTCCCGCATGGAGACCAATGCCAAAGCTA
TCTTTCTTTCCCGGCTATCATGGCTCCTTTCCTTCTCTCTGATCTGGGTT
GGTCTCTTGACCGAAGGCTGGCAACTCGTCAAGCTCCAAGGCTTCGGAAT
CCAAGAGACCGTCCAATATGGCCTCTGGCGCATCAGATATACCGGTACCT
ACACCTACACCTCTGACTTCATCGACTGGGAGCCCGAGGTTGCCGAGATT
GATGCAACAGCTTACCCCCGCGTGCAAGCCACCCGTGCCTGCATCGTCCT
GGCCCTCATGGCCCTAAGCCTCCAATTCCTGGTCGCCCTCCGTGGGTATT
GTGCTCGGTCCTATAAAGTGCAGAGAGTGTGCACTATCTCCTGTGCGGCA
TATGCGTCAGCTGATCTTGCCTTTACACTCTCTGCTATCCTGGTCTGGAA
GTCCATCTCGGAGGAGGCCTTCCATGTCGTGTGCTCGAGGGAGGGCTGCA
GTGTCTCCCCCCTTGAAGCAGATGCATTTCAAATGACGCCTTACTACGCT
TGGGGTTTTACCATCGTCAAACTAATATTGTCCTTCCCGGGGGTGGTCTC
ATTGATTTACCTTGGTATTGTTTCTTCATCCTCGTCCTCCTCTCAAACAG
CAACGGAGATGCCCGTGGTGACTGCTGTAGGGGGAACTGCTGCTAATGCT
GTTGCGTCGAGGAATGGAGGGAAAAGGGGGGGAAAGTTAGCTGAAATTGA
GCAGGCGGAAGACAATGCAATTATTGGACAGGAGGAGGGGAGTAGAGGGT
CACCCAAGACTGCAGACAGTTTTGGCAGTACAGACAGCAAGAAGATTGGT
GGTAAGAAGGGAAATGGAGACGTGTTCGATAGGAACGCACATGTATCGTA
CATTTTGGGGGGGGCAACAGGGGATCCTAATCCGGCATGGCTAAATCCGT
AGATGAGTCTATGTGGCTGGTTTTCCCGCATGGAGACCAATGCCAAAGCT
ATCTTTCTTTCCCGGCTATCATGGCTCCTTTCCTTCTCTCTGATCTGGGT
TGGTCTCTTGACCGAAGGCTGGCAACTCGTCAAGCTCCAAGGCTTCGGAA
TCCAAGAGACCGTCCAATATGGCCTCTGGCGCATCAGATATACCGGTACC
TACACCTACACCTCTGACTTCATCGACTGGGAGCCCGAGGTTGCCGAGAT
TGATGCAACAGCTTACCCCCGCGTGCAAGCCACCCGTGCCTGCATCGTCC
TGGCCCTCATGGCCCTAAGCCTCCAATTCCTGGTCGCCCTCCGTGGGTAT
TGTGCTCGGTCCTATAAAGTGCAGAGAGTGTGCACTATCTCCTGTGCGGC
ATATGCGTCAGCTGATCTTGCCTTTACACTCTCTGCTATCCTGGTCTGGA
AGTCCATCTCGGAGGAGGCCTTCCATGTCGTGTGCTCGAGGGAGGGCTGC
AGTGTCTCCCCCCTTGAAGCAGATGCATTTCAAATGACGCCTTACTACGC
TTGGGGTTTTACCATCGTCAAACTAATATTGTCCTTCCCGGGGGTGGTCT
CATTGATTTACCTTGGTATTGTTTCTTCATCCTCGTCCTCCTCTCAAACA
GCAACGGAGATGCCCGTGGTGACTGCTGTAGGGGGAACTGCTGCTAATGC
TGTTGCGTCGAGGAATGGAGGGAAAAGGGGGGGAAAGTTAGCTGAAATTG
AGCAGGCGGAAGACAATGCAATTATTGGACAGGAGGAGGGGAGTAGAGGG
TCACCCAAGACTGCAGACAGTTTTGGCAGTACAGACAGCAAGAAGATTGG
TGGTAAGAAGGGAAATGGAGACGTGTTCGATAGGAACGCACATGTATCGT
ACATTTTGGGGGGGGCAACAGGGGATCCTAATCCGGCATGGCTAAATCCG
TAG

Synonyms

Publications