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Properties
| Property Name | Value |
|---|
| TranscriptId | 671671 |
| Track | FilteredModels2 |
| ProteinId | 671585 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:745098..747913 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5560 ID=mRNA_5560|Name=jgi.p|Nanoce1779_2|671585|organism=Nannochloropsis oceanica|type=mRNA|length=2438bp
GGGGGAGGAAGCCTCGCAGGAGTTCGCGCCTTGTTTCGGGGCTGCCACCA
CAAAGCTGTGCTCTGTGCGCCATAAAGCCCTTGCTTCACACACTGTGAGA
AGTCTTCATTGATCCCGGTCCAACTTCGAGCCCCAATCGTTGTCACTACT
GTATCCAGGCGCCGCTACTTAAGGCGAGGCATCGGCTGCATCATCGCTCC
TCCCTCCTCCTTTCCTTCTTCACGTGCTCTGGGCAACACCATAACACACA
AACCATGGCCAACAAGCAGCACCCACTCATGCAAGGCGACCGCCTGGCCA
AGGAGCTCGCAGCACAGCAGGCGAGGGCAGCGGCGCGCGCGTATGTGACA
GATAAAGGCTGTATGAATGTTTCGGTCACGGAGCGCGTCCTTAATCGCGG
CACCTACTCAGGAGCGGAAGCCGAAGAGCTGGCCATTGCGGCGGGAGGAG
GTCTGTCAATACACAAGGACAACACGCTCCAAGTACTTAGAGAGAGGGAG
CTGACCAAGAAGCGGAAGGAGAAGGAGGCACAGAGCGAGGCTGCTTTGAA
GGCGAAATTGATGAAGCAACAAGAGGACTTCAGGAGGGAAAAAGCGGCGG
GTGGGACTAAAGCCAACTCAGAGGTAGAAGGAGGACAAGGAGGACAAGGA
GGAAAGAAGAAAATCGAGGAAGAAACGCCATTGCCGCCGGGGTGGGAGGC
TGTGCTAGACCCGGGAGGTTCCGGAGACAGCTATTACTGGCACCCTGCTA
CCAATGCCACCACCTGGACCAAGCCTGTTGGAGCAGTACCAGCAGCAGCA
ACAGTGGCAACAGTGACGAGCATCAACAAGGATGCGAGGAGCAACGGTTT
GGGCGGCAGTACGGCGACTACCACCACCAGCACCATAGCTGCTTTGGGTG
CCGTCGTTGGAGGGGCAGGTGAAGGAGGGGTAGGAGGTCATAGCGCGATC
ACAAGCAACCTCCCCCCGGGATGGAAGGAGGTGAAACACGCGGCAACGGG
CCAAGTGGTCTATGTCCATGAGGCGAGCAACATGAAGAGGTGGAGCAAAC
CCACCGCTGCTGATGACCTCTCTTCTGACATCCAGCAAACGAGGCAGGCA
CACGCAGACGCTGCCAGGCAAGAAAAACAGCAGCAGCAGCAGCAGCAAGA
GCAGCAGCGTGGCAGTGGAGGAGGGAAGAACAAGAAGAGGGGGAGGGAGG
GGGTGGAGGAGGTCGACCCAATGGACCCGACGGGGGGGAAGGGAGGAGGA
GGGTGGTCACAGGGATTGGGGGGAGGGAATGACCGCATGGCGGACAGCAC
TGCGGGTGGAAGTCTATGGCAGCAGCGGCCTTTGCCCGCACCGGGGGCTG
TTTTGAGAAAGCAGGGTGGAGGGGGAAGGGGGGGGGGGGAGGAGGGCATC
AGCAAGGACCGACTTGGAGACGGTGAGGGGTTGGAAATGGAGTTGGTTGT
ATGACAAAGAGAGAGGAGAAGGAGGGAGGAGGAAGAGGGTGTGTTTTTCA
TTCCTTCTCTCGTTTACTTTGCCTCTGGTTTGTCCGCGTCTATACAACCA
GTAAAAACAGGAACTTCCTCCAAGGCGCGGGTCAGATAGCCAGAAGAAGA
TGGTATACATTCGGGGATGGATGAGGAAGGATGAAGAGAGGGGAGGGAAG
GAGGGATGGAAGGGGGCGCGACGGAAAGTAGTGTGCCCCTCTGTAAAGAG
AGAGTGTCGATAAGTCAGTCACGAACCAAAAAAAAGTATTCCATTTCTCG
TTCCTTTTTCTCGCAAGAGCTAGAAAACCTAACACGAGCCCCAACAACGC
AATATTATTGTCCTTACCAGCGAGAATGGCCTTTGGGGGGACAGTGTGCT
AGTTTTGGTTGGGGAAGCTCCAATGCCTCCGTCTGTTGCAAACATTCATA
TTGTGGATTCCATATCTGATGCATCATCATCCCCGGACGTGCATCGCCGA
CCTCGTCGCCGCACGCGTCCGCAGCGCGCAGCAACTACTTTCTCTAACGC
TTATATTGGCCGCCTCAGCGACTTGCTTGGATTTCTTGTATGTGCTGACG
GATAAGGTAGGCGTGGTCGCATGGTTGGCGTCTTTCAGGCATGCGCTACG
CGGAGCCGCACGTCCAAACCCAAGCAAGCTGCAACAACCCGGTGCCGTTT
TCCCAAACGTTTTCTCGCCGCGACACTTCCACATTCCTTGACACGATGGA
CTTCGAATCCCTGTTACCTGGACGCTGCGCGCCCGTCGGTCGAGGTCCAG
GTGATGGAGGGATGAGACATATGCTTCGAAATTGGGAATGATGCAGGGGT
TAATGTAGATGCAGCGGGTGTGCTATTTGCATTATGGTCAATTCTTGCTT
GACACCCCTTTCGAATGTATGTGTATGCGCCCTGATTCTCACCCATTTCT
TCCCTCTCTTCCCACCACAGAAACCACCACTACTACTT back to topprotein sequence of jgi.p|Nanoce1779_2|671585 >mRNA_5560-protein ID=mRNA_5560-protein|Name=jgi.p|Nanoce1779_2|671585|organism=Nannochloropsis oceanica|type=polypeptide|length=400bp
MANKQHPLMQGDRLAKELAAQQARAAARAYVTDKGCMNVSVTERVLNRGT
YSGAEAEELAIAAGGGLSIHKDNTLQVLRERELTKKRKEKEAQSEAALKA
KLMKQQEDFRREKAAGGTKANSEVEGGQGGQGGKKKIEEETPLPPGWEAV
LDPGGSGDSYYWHPATNATTWTKPVGAVPAAATVATVTSINKDARSNGLG
GSTATTTTSTIAALGAVVGGAGEGGVGGHSAITSNLPPGWKEVKHAATGQ
VVYVHEASNMKRWSKPTAADDLSSDIQQTRQAHADAARQEKQQQQQQQEQ
QRGSGGGKNKKRGREGVEEVDPMDPTGGKGGGGWSQGLGGGNDRMADSTA
GGSLWQQRPLPAPGAVLRKQGGGGRGGGEEGISKDRLGDGEGLEMELVV* back to topmRNA from alignment at scaffold_13:745098..747913- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5560 ID=mRNA_5560|Name=jgi.p|Nanoce1779_2|671585|organism=Nannochloropsis oceanica|type=mRNA|length=2816bp|location=Sequence derived from alignment at scaffold_13:745098..747913- (Nannochloropsis oceanica)
GGGGGAGGAAGCCTCGCAGGAGTTCGCGCCTTGTTTCGGGGCTGCCACCA
CAAAGCTGTGCTCTGTGCGCCATAAAGCCCTTGCTTCACACACTGTGAGA
AGTCTTCATTGATCCCGGTCCAACTTCGAGCCCCAATCGTTGTCACTACT
GTATCCAGGCGCCGCTACTTAAGGCGAGGCATCGGCTGCATCATCGCTCC
TCCCTCCTCCTTTCCTTCTTCACGTGCTCTGGGCAACACCATAACACACA
AACCATGGCCAACAAGCAGCACCCACTCATGCAAGGCGACCGCCTGGCCA
AGGAGCTCGCAGCACAGCAGGCGAGGGCAGCGGCGCGCGCGTATGTGACA
GATAAAGGTACGCCCTAGAGCATCTATCTGTCTCCTTTTAGTGGGGGGTT
GGAGAGGGGGGGAGGTCAACCTCGTTGTTATCGTATTATTCCAGTAAATG
GTTTTGGTTGACGTATTGTTTTCGGCCGCTCTCTAGTGAGGCGTATTACC
TTTCGTCCAGACTTGTGAGTGTCCTCCTCTTTTTGATCTTCCCGTGTTCA
GCAGCCTGAGGCAGTTAATGGTATGCTCCCATTGGTCCTCCTTGTGCAGC
GGGTCCTTAAATATTGTCCTTTGTCGCCTCTCCTCCTCTTGTCGTTCACC
TACTCCCACCATAAATACCTCTCATTGTCAGATTCTCTCACCTCGCCTCT
CCTCCTTCTCCCTCCCTCACCATACCCCCCCCCAGGCTGTATGAATGTTT
CGGTCACGGAGCGCGTCCTTAATCGCGGCACCTACTCAGGAGCGGAAGCC
GAAGAGCTGGCCATTGCGGCGGGAGGAGGTCTGTCAATACACAAGGACAA
CACGCTCCAAGTACTTAGAGAGAGGGAGCTGACCAAGAAGCGGAAGGAGA
AGGAGGCACAGAGCGAGGCTGCTTTGAAGGCGAAATTGATGAAGCAACAA
GAGGACTTCAGGAGGGAAAAAGCGGCGGGTGGGACTAAAGCCAACTCAGA
GGTAGAAGGAGGACAAGGAGGACAAGGAGGAAAGAAGAAAATCGAGGAAG
AAACGCCATTGCCGCCGGGGTGGGAGGCTGTGCTAGACCCGGGAGGTTCC
GGAGACAGCTATTACTGGCACCCTGCTACCAATGCCACCACCTGGACCAA
GCCTGTTGGAGCAGTACCAGCAGCAGCAACAGTGGCAACAGTGACGAGCA
TCAACAAGGATGCGAGGAGCAACGGTTTGGGCGGCAGTACGGCGACTACC
ACCACCAGCACCATAGCTGCTTTGGGTGCCGTCGTTGGAGGGGCAGGTGA
AGGAGGGGTAGGAGGTCATAGCGCGATCACAAGCAACCTCCCCCCGGGAT
GGAAGGAGGTGAAACACGCGGCAACGGGCCAAGTGGTCTATGTCCATGAG
GCGAGCAACATGAAGAGGTGGAGCAAACCCACCGCTGCTGATGACCTCTC
TTCTGACATCCAGCAAACGAGGCAGGCACACGCAGACGCTGCCAGGCAAG
AAAAACAGCAGCAGCAGCAGCAGCAAGAGCAGCAGCGTGGCAGTGGAGGA
GGGAAGAACAAGAAGAGGGGGAGGGAGGGGGTGGAGGAGGTCGACCCAAT
GGACCCGACGGGGGGGAAGGGAGGAGGAGGGTGGTCACAGGGATTGGGGG
GAGGGAATGACCGCATGGCGGACAGCACTGCGGGTGGAAGTCTATGGCAG
CAGCGGCCTTTGCCCGCACCGGGGGCTGTTTTGAGAAAGCAGGGTGGAGG
GGGAAGGGGGGGGGGGGAGGAGGGCATCAGCAAGGACCGACTTGGAGACG
GTGAGGGGTTGGAAATGGAGTTGGTTGTATGACAAAGAGAGAGGAGAAGG
AGGGAGGAGGAAGAGGGTGTGTTTTTCATTCCTTCTCTCGTTTACTTTGC
CTCTGGTTTGTCCGCGTCTATACAACCAGTAAAAACAGGAACTTCCTCCA
AGGCGCGGGTCAGATAGCCAGAAGAAGATGGTATACATTCGGGGATGGAT
GAGGAAGGATGAAGAGAGGGGAGGGAAGGAGGGATGGAAGGGGGCGCGAC
GGAAAGTAGTGTGCCCCTCTGTAAAGAGAGAGTGTCGATAAGTCAGTCAC
GAACCAAAAAAAAGTATTCCATTTCTCGTTCCTTTTTCTCGCAAGAGCTA
GAAAACCTAACACGAGCCCCAACAACGCAATATTATTGTCCTTACCAGCG
AGAATGGCCTTTGGGGGGACAGTGTGCTAGTTTTGGTTGGGGAAGCTCCA
ATGCCTCCGTCTGTTGCAAACATTCATATTGTGGATTCCATATCTGATGC
ATCATCATCCCCGGACGTGCATCGCCGACCTCGTCGCCGCACGCGTCCGC
AGCGCGCAGCAACTACTTTCTCTAACGCTTATATTGGCCGCCTCAGCGAC
TTGCTTGGATTTCTTGTATGTGCTGACGGATAAGGTAGGCGTGGTCGCAT
GGTTGGCGTCTTTCAGGCATGCGCTACGCGGAGCCGCACGTCCAAACCCA
AGCAAGCTGCAACAACCCGGTGCCGTTTTCCCAAACGTTTTCTCGCCGCG
ACACTTCCACATTCCTTGACACGATGGACTTCGAATCCCTGTTACCTGGA
CGCTGCGCGCCCGTCGGTCGAGGTCCAGGTGATGGAGGGATGAGACATAT
GCTTCGAAATTGGGAATGATGCAGGGGTTAATGTAGATGCAGCGGGTGTG
CTATTTGCATTATGGTCAATTCTTGCTTGACACCCCTTTCGAATGTATGT
GTATGCGCCCTGATTCTCACCCATTTCTTCCCTCTCTTCCCACCACAGAA
ACCACCACTACTACTT back to topCoding sequence (CDS) from alignment at scaffold_13:745098..747913- >mRNA_5560 ID=mRNA_5560|Name=jgi.p|Nanoce1779_2|671585|organism=Nannochloropsis oceanica|type=CDS|length=2400bp|location=Sequence derived from alignment at scaffold_13:745098..747913- (Nannochloropsis oceanica)
GCTGTATGAATGTTTCGGTCACGGAGCGCGTCCTTAATCGCGGCACCTAC
TCAGGAGCGGAAGCCGAAGAGCTGGCCATTGCGGCGGGAGGAGGTCTGTC
AATACACAAGGACAACACGCTCCAAGTACTTAGAGAGAGGGAGCTGACCA
AGAAGCGGAAGGAGAAGGAGGCACAGAGCGAGGCTGCTTTGAAGGCGAAA
TTGATGAAGCAACAAGAGGACTTCAGGAGGGAAAAAGCGGCGGGTGGGAC
TAAAGCCAACTCAGAGGTAGAAGGAGGACAAGGAGGACAAGGAGGAAAGA
AGAAAATCGAGGAAGAAACGCCATTGCCGCCGGGGTGGGAGGCTGTGCTA
GACCCGGGAGGTTCCGGAGACAGCTATTACTGGCACCCTGCTACCAATGC
CACCACCTGGACCAAGCCTGTTGGAGCAGTACCAGCAGCAGCAACAGTGG
CAACAGTGACGAGCATCAACAAGGATGCGAGGAGCAACGGTTTGGGCGGC
AGTACGGCGACTACCACCACCAGCACCATAGCTGCTTTGGGTGCCGTCGT
TGGAGGGGCAGGTGAAGGAGGGGTAGGAGGTCATAGCGCGATCACAAGCA
ACCTCCCCCCGGGATGGAAGGAGGTGAAACACGCGGCAACGGGCCAAGTG
GTCTATGTCCATGAGGCGAGCAACATGAAGAGGTGGAGCAAACCCACCGC
TGCTGATGACCTCTCTTCTGACATCCAGCAAACGAGGCAGGCACACGCAG
ACGCTGCCAGGCAAGAAAAACAGCAGCAGCAGCAGCAGCAAGAGCAGCAG
CGTGGCAGTGGAGGAGGGAAGAACAAGAAGAGGGGGAGGGAGGGGGTGGA
GGAGGTCGACCCAATGGACCCGACGGGGGGGAAGGGAGGAGGAGGGTGGT
CACAGGGATTGGGGGGAGGGAATGACCGCATGGCGGACAGCACTGCGGGT
GGAAGTCTATGGCAGCAGCGGCCTTTGCCCGCACCGGGGGCTGTTTTGAG
AAAGCAGGGTGGAGGGGGAAGGGGGGGGGGGGAGGAGGGCATCAGCAAGG
ACCGACTTGGAGACGGTGAGGGGTTGGAAATGGAGTTGGTTGTATGAATG
GCCAACAAGCAGCACCCACTCATGCAAGGCGACCGCCTGGCCAAGGAGCT
CGCAGCACAGCAGGCGAGGGCAGCGGCGCGCGCGTATGTGACAGATAAAG
GCTGTATGAATGTTTCGGTCACGGAGCGCGTCCTTAATCGCGGCACCTAC
TCAGGAGCGGAAGCCGAAGAGCTGGCCATTGCGGCGGGAGGAGGTCTGTC
AATACACAAGGACAACACGCTCCAAGTACTTAGAGAGAGGGAGCTGACCA
AGAAGCGGAAGGAGAAGGAGGCACAGAGCGAGGCTGCTTTGAAGGCGAAA
TTGATGAAGCAACAAGAGGACTTCAGGAGGGAAAAAGCGGCGGGTGGGAC
TAAAGCCAACTCAGAGGTAGAAGGAGGACAAGGAGGACAAGGAGGAAAGA
AGAAAATCGAGGAAGAAACGCCATTGCCGCCGGGGTGGGAGGCTGTGCTA
GACCCGGGAGGTTCCGGAGACAGCTATTACTGGCACCCTGCTACCAATGC
CACCACCTGGACCAAGCCTGTTGGAGCAGTACCAGCAGCAGCAACAGTGG
CAACAGTGACGAGCATCAACAAGGATGCGAGGAGCAACGGTTTGGGCGGC
AGTACGGCGACTACCACCACCAGCACCATAGCTGCTTTGGGTGCCGTCGT
TGGAGGGGCAGGTGAAGGAGGGGTAGGAGGTCATAGCGCGATCACAAGCA
ACCTCCCCCCGGGATGGAAGGAGGTGAAACACGCGGCAACGGGCCAAGTG
GTCTATGTCCATGAGGCGAGCAACATGAAGAGGTGGAGCAAACCCACCGC
TGCTGATGACCTCTCTTCTGACATCCAGCAAACGAGGCAGGCACACGCAG
ACGCTGCCAGGCAAGAAAAACAGCAGCAGCAGCAGCAGCAAGAGCAGCAG
CGTGGCAGTGGAGGAGGGAAGAACAAGAAGAGGGGGAGGGAGGGGGTGGA
GGAGGTCGACCCAATGGACCCGACGGGGGGGAAGGGAGGAGGAGGGTGGT
CACAGGGATTGGGGGGAGGGAATGACCGCATGGCGGACAGCACTGCGGGT
GGAAGTCTATGGCAGCAGCGGCCTTTGCCCGCACCGGGGGCTGTTTTGAG
AAAGCAGGGTGGAGGGGGAAGGGGGGGGGGGGAGGAGGGCATCAGCAAGG
ACCGACTTGGAGACGGTGAGGGGTTGGAAATGGAGTTGGTTGTATGAATG
GCCAACAAGCAGCACCCACTCATGCAAGGCGACCGCCTGGCCAAGGAGCT
CGCAGCACAGCAGGCGAGGGCAGCGGCGCGCGCGTATGTGACAGATAAAG back to top
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