jgi.p|Nanoce1779_2|592959, mRNA_5558 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592959
Unique NamemRNA_5558
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length377
Alignment locationscaffold_13:744288..745119 -

Link to JBrowse

Properties
Property NameValue
TranscriptId593045
TrackFilteredModels2
ProteinId592959
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:744288..745119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592959gene_5558Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592959mRNA_5558-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5558CDS_5558Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5558 ID=mRNA_5558|Name=jgi.p|Nanoce1779_2|592959|organism=Nannochloropsis oceanica|type=mRNA|length=377bp
ACAGAAACCACCACTACTACTTCAAGACAACCATGAAAGTCACCACCCTT
TCTGCTGCTCTGGGCGCCGCCGCCCTGGCACTCCTTTCCTTCTCTGCCAC
TACAGCCATGCTACTGGACACCCCCGCCTTGGGACAAAAACAACACCAAA
TGTTTCAGTACCTGGATGCCGCACGACAAGGCGAGCAAGGACAACAAGGC
GTAGCTGGAAATACAAGGGCATGTGAACGATTCGTGCGTGACAAGGCTGT
GGAGACGGATTTGCTTGAGGTCATTTCTGGCTTTTATAATGCAGATGTCA
ACGCCATGTTTGCTTGAGCAGCCCGGCGATGAGGAGAGAGGGAAGGAGAG
AGGGAAGGAGAGAGGGAAGGAGAGAGG
back to top

protein sequence of jgi.p|Nanoce1779_2|592959

>mRNA_5558-protein ID=mRNA_5558-protein|Name=jgi.p|Nanoce1779_2|592959|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MKVTTLSAALGAAALALLSFSATTAMLLDTPALGQKQHQMFQYLDAARQG
EQGQQGVAGNTRACERFVRDKAVETDLLEVISGFYNADVNAMFA*
back to top

mRNA from alignment at scaffold_13:744288..745119-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5558 ID=mRNA_5558|Name=jgi.p|Nanoce1779_2|592959|organism=Nannochloropsis oceanica|type=mRNA|length=832bp|location=Sequence derived from alignment at scaffold_13:744288..745119- (Nannochloropsis oceanica)
ACAGAAACCACCACTACTACTTCAAGACAACCATGAAAGTCACCACCCTT
TCTGCTGCTCTGGGCGCCGCCGCCCTGGCACTCCTTTCCTTCTCTGCCAC
TACAGCCATGCTACTGGACACCCCCGCCTTGGGACAAAAACAACACCAAA
TGTTTCAGTACCTGGATGCCGCACGACAAGGCGAGCAAGGACAACAAGGT
GAGTACGAGAGATTTAGAACAAATTGAGGGAGGAAAAACGAAACGGGAAA
GGATAGCACAAAAGGAAAAAAAAGTATATGATATCACAGCACATCGTCTC
TCCCGCGGCCGTGGCTTTGTGTATAATCCTAGCATACACACTCAAGATTA
CTACCCTCAATCATTTTCCAATATAGGCGTAGCTGGAAATACAAGGGCAT
GTGAACGATTCGTGCGTGACAAGGCTGTGGAGACGGATTTGCTTGAGGTA
CGTGACCTGTCTGTGTGCTAGTGGGTGGGTGATAAAAACATTATAGAGGG
AGATTCGTGAGACGTGACAGAGACATGTACGTGTATGCAAGTCAGTGCGT
TAGAGAGAGCGCGTCGTCCTTTCCTTTGTGTGTCCAATCTGGTCGTGCAC
GTGCGCATGGGTCGGAGAGTGTATGGTCTGCCTCACACGAACGCCTCCTA
TCCCATCGTCCGCTTACTCACCTCCCTTACCCGCTACCCACACACCATCA
CTCTCACTATCATCATTACAACAGGTCATTTCTGGCTTTTATAATGCAGA
TGTCAACGCCATGTTTGCTTGAGCAGCCCGGCGATGAGGAGAGAGGGAAG
GAGAGAGGGAAGGAGAGAGGGAAGGAGAGAGG
back to top

Coding sequence (CDS) from alignment at scaffold_13:744288..745119-

>mRNA_5558 ID=mRNA_5558|Name=jgi.p|Nanoce1779_2|592959|organism=Nannochloropsis oceanica|type=CDS|length=855bp|location=Sequence derived from alignment at scaffold_13:744288..745119- (Nannochloropsis oceanica)
GTCATTTCTGGCTTTTATAATGCAGATGTCAACGCCATGTTTGCTTGAGC
GTAGCTGGAAATACAAGGGCATGTGAACGATTCGTGCGTGACAAGGCTGT
GGAGACGGATTTGCTTGAGATGAAAGTCACCACCCTTTCTGCTGCTCTGG
GCGCCGCCGCCCTGGCACTCCTTTCCTTCTCTGCCACTACAGCCATGCTA
CTGGACACCCCCGCCTTGGGACAAAAACAACACCAAATGTTTCAGTACCT
GGATGCCGCACGACAAGGCGAGCAAGGACAACAAGGTCATTTCTGGCTTT
TATAATGCAGATGTCAACGCCATGTTTGCTTGAGCGTAGCTGGAAATACA
AGGGCATGTGAACGATTCGTGCGTGACAAGGCTGTGGAGACGGATTTGCT
TGAGATGAAAGTCACCACCCTTTCTGCTGCTCTGGGCGCCGCCGCCCTGG
CACTCCTTTCCTTCTCTGCCACTACAGCCATGCTACTGGACACCCCCGCC
TTGGGACAAAAACAACACCAAATGTTTCAGTACCTGGATGCCGCACGACA
AGGCGAGCAAGGACAACAAGGTCATTTCTGGCTTTTATAATGCAGATGTC
AACGCCATGTTTGCTTGAGCGTAGCTGGAAATACAAGGGCATGTGAACGA
TTCGTGCGTGACAAGGCTGTGGAGACGGATTTGCTTGAGATGAAAGTCAC
CACCCTTTCTGCTGCTCTGGGCGCCGCCGCCCTGGCACTCCTTTCCTTCT
CTGCCACTACAGCCATGCTACTGGACACCCCCGCCTTGGGACAAAAACAA
CACCAAATGTTTCAGTACCTGGATGCCGCACGACAAGGCGAGCAAGGACA
ACAAG
back to top
Synonyms
Publications