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Properties
| Property Name | Value |
|---|
| TranscriptId | 593031 |
| Track | FilteredModels2 |
| ProteinId | 592945 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:727332..729640 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5556 ID=mRNA_5556|Name=jgi.p|Nanoce1779_2|592945|organism=Nannochloropsis oceanica|type=mRNA|length=2276bp
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCATTCAGTAGCAACAATACC
AGCAACAACAGCAGTCCCGCCCCTCCTTACCTCGAGCTGCAGCTCCCCAT
CGAGCTCTTCCTCTTCCACATCGCCCTGCCGCTCCTCCTTGAGCGCTTTC
GTCTCCGGAATCTGATCAGAGAGGGGGTCGAGAAGGGCTTCGGTTCCCTT
TGCCTCCTCTTCGGTCTGGGCCCGAGCCTGCTCGATATGGACACCTTACG
ACAGCTACAGCTGCAACACCCGCACCAGCAACAACCACAGCAGCCCCCAC
AGCGAGGAAATGGAGGCGAGGAACGGATCGGTGGTGGCAATGGTCGTGCG
GTTGCTGCTGCTGGTGCTCCTCCTGCTCCTCCTCTGGCTGCGCCTCTGCC
TCTTATCATTCGTCCCGAGCCTACCGAGGGCGAAGGCGGGAGGGAAGAAA
GGAAGGAGGAAGGCGCCCTAACTTTTTACCCTTTACGGGTCGTGGGGCTG
TGTATTTCCATGTGTGTGTGCATCGCAGTCGTGGCCTCCCTGGTGGTGCA
AGTGCCCTTGAGGGTGGGGAGAGAGGGCCTGCGCCGTCTAGGGCTACCTA
CCGGTCACGATCTGTATAACCTGGCCGTGGGATTCCTTCTTGTGGTGTTG
GTGGGCTCGGTGCTGGGGAAAGGGTGGCAGGTATTTGTCGGGGGTGAAGG
AGGAGGGGGGGGGGAAGCAGTGAGAGCAGGAGCAGCAGGAGGAGTCCAGG
GAGCGCCTGCCATGGTGGTGGCTGAGGGAGAAGAGCGAGCAGGAGGAGGT
CGACCGCAATTACAACAGCAGCGGCAGGAAGAGGGGCAGGAGCAGGAAGA
CCGCCGAGATCAGGAGGAGAAAGAGCAGGAGGATGGAGGGCAGCAGCAGC
AGCAGCAGCAGCAACGACAACGGCAAACACAAAAAGCAAATCCCCTCGCG
TTCCTTGTCGCCCGTATCCGCACCCACGCTCACGACCGTCTCATCCACCT
CCAACGTGTCCTCCCCTCCCTCGGGCACTCCTTTCTCCTCCTCTTTCAAT
CCCTCCTCCTGCTCTCCCTCTGGCTTCTTGTCCTCCCCCTCCTCGTCGGC
CTTCTCTTTGAACTGGTCTTAGTCATTCCTGCTCGTGTCCCCATCGACGA
GACGCCTCTCATCCCTTTCTACGAGGCCTGGGCTCTCGGCCTCGTCTTCC
TCAAAATCCAAGCCCGCTGCCTCCTTCTAGGTCTCTACGGTAACGACCAC
CCTTGGAAACGAAAATTTGAACGTGTCCGTGCCAACGGCTTTCGGCGCCT
AGAGTTTCGGTGGACCTTGACTCAGGTCGTCCTTCCTCTCCTCCTCCTCT
TCCTCTCCCTCCTTCTCACCCCCTACTTTCTCAGCAAAACCGTCGAGAAA
CTCGCACATCTCTACCTCCGACACGGCCTCGGCGGGCCCATGCCGCACCC
TGCCCTCCCTCGCTTCCTCGCTCGCTTTCTCGCCCCTGTCTGGTACCGGC
AACAGCAGCAGCGGGACATACACGAGGCTTCGATCCTACTTTTGGTGGCG
GGAATAAAGAGATACGCGTTTTTATACTACGCCTTGTATCGTGGTAGTGT
GAGGGTTTGGCTGTGGGTAGAGAAGGGCTGGAAGCAGCTGCATGACAGGT
TGAGAGATGACGCTTATTTGGTGGGGATGGAGTTGAAGAATTACTCGCAG
GAAGAAGGGAGGGAGGAGGGGTAGGGGAGACTGGGATGATCTGATGAAGG
ATGAAGAAGTCAGCTCTCATAGGGCTTGCTAATGTACGAGATGTAGTGCC
AAGCAAGAAAATAGGGATATGGGTATAGGCATGGTTTGATAGACACCGCA
AACACGCATAATTTATTACGGCAGAGAAATAGACTATAGATCTAGTAGGG
ACGCGAGAAATGGAGATGGTGAAGTGTCCTGTAAATGAATATGTAAAACA
AGGAAAGAGAAACAACCAAAATCTCGCTCTGTACGCATTTATCGTGATGA
GTATTAGTAGTCTCATGGAAGGGGGTAAGGAGGTTTAACAAATGTGCATT
CCTCTATGAGTCTGTCTGCCAGTCTCTTTGTGAGTCACATCTCGTGTCGT
GTGTTTACTGGGCATGTAATGCATTGCCATTACGTGGCTTGAGTGACCAC
TTTTTTTGTTGCATGGATGTCGGCGATATATATATCGTCTTATCGGAAGG
CAATGCTGTGGCCGAGGACGACACGTTAGATAGAGGCAAGGGGACAAAGC
AAACTGAACAAAAAGGAGCGACTTAC back to topprotein sequence of jgi.p|Nanoce1779_2|592945 >mRNA_5556-protein ID=mRNA_5556-protein|Name=jgi.p|Nanoce1779_2|592945|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp
MDTLRQLQLQHPHQQQPQQPPQRGNGGEERIGGGNGRAVAAAGAPPAPPL
AAPLPLIIRPEPTEGEGGREERKEEGALTFYPLRVVGLCISMCVCIAVVA
SLVVQVPLRVGREGLRRLGLPTGHDLYNLAVGFLLVVLVGSVLGKGWQVF
VGGEGGGGGEAVRAGAAGGVQGAPAMVVAEGEERAGGGRPQLQQQRQEEG
QEQEDRRDQEEKEQEDGGQQQQQQQQRQRQTQKANPLAFLVARIRTHAHD
RLIHLQRVLPSLGHSFLLLFQSLLLLSLWLLVLPLLVGLLFELVLVIPAR
VPIDETPLIPFYEAWALGLVFLKIQARCLLLGLYGNDHPWKRKFERVRAN
GFRRLEFRWTLTQVVLPLLLLFLSLLLTPYFLSKTVEKLAHLYLRHGLGG
PMPHPALPRFLARFLAPVWYRQQQQRDIHEASILLLVAGIKRYAFLYYAL
YRGSVRVWLWVEKGWKQLHDRLRDDAYLVGMELKNYSQEEGREEG* back to topmRNA from alignment at scaffold_13:727332..729640- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5556 ID=mRNA_5556|Name=jgi.p|Nanoce1779_2|592945|organism=Nannochloropsis oceanica|type=mRNA|length=2309bp|location=Sequence derived from alignment at scaffold_13:727332..729640- (Nannochloropsis oceanica)
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCATTCAGTAGCAACAATACC
AGCAACAACAGCAGTCCCGCCCCTCCTTACCTCGAGCTGCAGCTCCCCAT
CGAGCTCTTCCTCTTCCACATCGCCCTGCCGCTCCTCCTTGAGCGCTTTC
GTCTCCGGAATCTGATCAGAGAGGGGGTCGAGAAGGGCTTCGGTTCCCTT
TGCCTCCTCTTCGGTCTGGGCCCGAGCCTGCTCGATATGGACACCTTACG
ACAGCTACAGCTGCAACACCCGCACCAGCAACAACCACAGCAGCCCCCAC
AGCGAGGAAATGGAGGCGAGGAACGGATCGGTGGTGGCAATGGTCGTGCG
GTTGCTGCTGCTGGTGCTCCTCCTGCTCCTCCTCTGGCTGCGCCTCTGCC
TCTTATCATTCGTCCCGAGCCTACCGAGGGCGAAGGCGGGAGGGAAGAAA
GGAAGGAGGAAGGCGCCCTAACTTTTTACCCTTTACGGGTCGTGGGGCTG
TGTATTTCCATGTGTGTGTGCATCGCAGTCGTGGCCTCCCTGGTGGTGCA
AGTGCCCTTGAGGGTGGGGAGAGAGGGCCTGCGCCGTCTAGGGCTACCTA
CCGGTCACGATCTGTATAACCTGGCCGTGGGATTCCTTCTTGTGGTGTTG
GTGGGCTCGGTGCTGGGGAAAGGGTGGCAGGTATTTGTCGGGGGTGAAGG
AGGAGGGGGGGGGGAAGCAGTGAGAGCAGGAGCAGCAGGAGGAGTCCAGG
GAGCGCCTGCCATGGTGGTGGCTGAGGGAGAAGAGCGAGCAGGAGGAGGT
CGACCGCAATTACAACAGCAGCGGCAGGAAGAGGGGCAGGAGCAGGAAGA
CCGCCGAGATCAGGAGGAGAAAGAGCAGGAGGATGGAGGGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGA
CAACGGCAAACACAAAAAGCAAATCCCCTCGCGTTCCTTGTCGCCCGTAT
CCGCACCCACGCTCACGACCGTCTCATCCACCTCCAACGTGTCCTCCCCT
CCCTCGGGCACTCCTTTCTCCTCCTCTTTCAATCCCTCCTCCTGCTCTCC
CTCTGGCTTCTTGTCCTCCCCCTCCTCGTCGGCCTTCTCTTTGAACTGGT
CTTAGTCATTCCTGCTCGTGTCCCCATCGACGAGACGCCTCTCATCCCTT
TCTACGAGGCCTGGGCTCTCGGCCTCGTCTTCCTCAAAATCCAAGCCCGC
TGCCTCCTTCTAGGTCTCTACGGTAACGACCACCCTTGGAAACGAAAATT
TGAACGTGTCCGTGCCAACGGCTTTCGGCGCCTAGAGTTTCGGTGGACCT
TGACTCAGGTCGTCCTTCCTCTCCTCCTCCTCTTCCTCTCCCTCCTTCTC
ACCCCCTACTTTCTCAGCAAAACCGTCGAGAAACTCGCACATCTCTACCT
CCGACACGGCCTCGGCGGGCCCATGCCGCACCCTGCCCTCCCTCGCTTCC
TCGCTCGCTTTCTCGCCCCTGTCTGGTACCGGCAACAGCAGCAGCGGGAC
ATACACGAGGCTTCGATCCTACTTTTGGTGGCGGGAATAAAGAGATACGC
GTTTTTATACTACGCCTTGTATCGTGGTAGTGTGAGGGTTTGGCTGTGGG
TAGAGAAGGGCTGGAAGCAGCTGCATGACAGGTTGAGAGATGACGCTTAT
TTGGTGGGGATGGAGTTGAAGAATTACTCGCAGGAAGAAGGGAGGGAGGA
GGGGTAGGGGAGACTGGGATGATCTGATGAAGGATGAAGAAGTCAGCTCT
CATAGGGCTTGCTAATGTACGAGATGTAGTGCCAAGCAAGAAAATAGGGA
TATGGGTATAGGCATGGTTTGATAGACACCGCAAACACGCATAATTTATT
ACGGCAGAGAAATAGACTATAGATCTAGTAGGGACGCGAGAAATGGAGAT
GGTGAAGTGTCCTGTAAATGAATATGTAAAACAAGGAAAGAGAAACAACC
AAAATCTCGCTCTGTACGCATTTATCGTGATGAGTATTAGTAGTCTCATG
GAAGGGGGTAAGGAGGTTTAACAAATGTGCATTCCTCTATGAGTCTGTCT
GCCAGTCTCTTTGTGAGTCACATCTCGTGTCGTGTGTTTACTGGGCATGT
AATGCATTGCCATTACGTGGCTTGAGTGACCACTTTTTTTGTTGCATGGA
TGTCGGCGATATATATATCGTCTTATCGGAAGGCAATGCTGTGGCCGAGG
ACGACACGTTAGATAGAGGCAAGGGGACAAAGCAAACTGAACAAAAAGGA
GCGACTTAC back to topCoding sequence (CDS) from alignment at scaffold_13:727332..729640- >mRNA_5556 ID=mRNA_5556|Name=jgi.p|Nanoce1779_2|592945|organism=Nannochloropsis oceanica|type=CDS|length=2976bp|location=Sequence derived from alignment at scaffold_13:727332..729640- (Nannochloropsis oceanica)
GCAGCAGCAGCAGCAGCAGCAGCAACGACAACGGCAAACACAAAAAGCAA
ATCCCCTCGCGTTCCTTGTCGCCCGTATCCGCACCCACGCTCACGACCGT
CTCATCCACCTCCAACGTGTCCTCCCCTCCCTCGGGCACTCCTTTCTCCT
CCTCTTTCAATCCCTCCTCCTGCTCTCCCTCTGGCTTCTTGTCCTCCCCC
TCCTCGTCGGCCTTCTCTTTGAACTGGTCTTAGTCATTCCTGCTCGTGTC
CCCATCGACGAGACGCCTCTCATCCCTTTCTACGAGGCCTGGGCTCTCGG
CCTCGTCTTCCTCAAAATCCAAGCCCGCTGCCTCCTTCTAGGTCTCTACG
GTAACGACCACCCTTGGAAACGAAAATTTGAACGTGTCCGTGCCAACGGC
TTTCGGCGCCTAGAGTTTCGGTGGACCTTGACTCAGGTCGTCCTTCCTCT
CCTCCTCCTCTTCCTCTCCCTCCTTCTCACCCCCTACTTTCTCAGCAAAA
CCGTCGAGAAACTCGCACATCTCTACCTCCGACACGGCCTCGGCGGGCCC
ATGCCGCACCCTGCCCTCCCTCGCTTCCTCGCTCGCTTTCTCGCCCCTGT
CTGGTACCGGCAACAGCAGCAGCGGGACATACACGAGGCTTCGATCCTAC
TTTTGGTGGCGGGAATAAAGAGATACGCGTTTTTATACTACGCCTTGTAT
CGTGGTAGTGTGAGGGTTTGGCTGTGGGTAGAGAAGGGCTGGAAGCAGCT
GCATGACAGGTTGAGAGATGACGCTTATTTGGTGGGGATGGAGTTGAAGA
ATTACTCGCAGGAAGAAGGGAGGGAGGAGGGGTAGATGGACACCTTACGA
CAGCTACAGCTGCAACACCCGCACCAGCAACAACCACAGCAGCCCCCACA
GCGAGGAAATGGAGGCGAGGAACGGATCGGTGGTGGCAATGGTCGTGCGG
TTGCTGCTGCTGGTGCTCCTCCTGCTCCTCCTCTGGCTGCGCCTCTGCCT
CTTATCATTCGTCCCGAGCCTACCGAGGGCGAAGGCGGGAGGGAAGAAAG
GAAGGAGGAAGGCGCCCTAACTTTTTACCCTTTACGGGTCGTGGGGCTGT
GTATTTCCATGTGTGTGTGCATCGCAGTCGTGGCCTCCCTGGTGGTGCAA
GTGCCCTTGAGGGTGGGGAGAGAGGGCCTGCGCCGTCTAGGGCTACCTAC
CGGTCACGATCTGTATAACCTGGCCGTGGGATTCCTTCTTGTGGTGTTGG
TGGGCTCGGTGCTGGGGAAAGGGTGGCAGGTATTTGTCGGGGGTGAAGGA
GGAGGGGGGGGGGAAGCAGTGAGAGCAGGAGCAGCAGGAGGAGTCCAGGG
AGCGCCTGCCATGGTGGTGGCTGAGGGAGAAGAGCGAGCAGGAGGAGGTC
GACCGCAATTACAACAGCAGCGGCAGGAAGAGGGGCAGGAGCAGGAAGAC
CGCCGAGATCAGGAGGAGAAAGAGCAGGAGGATGGAGGGCAGCAGCAGCA
GCAGCAGCAGCAACGACAACGGCAAACACAAAAAGCAAATCCCCTCGCGT
TCCTTGTCGCCCGTATCCGCACCCACGCTCACGACCGTCTCATCCACCTC
CAACGTGTCCTCCCCTCCCTCGGGCACTCCTTTCTCCTCCTCTTTCAATC
CCTCCTCCTGCTCTCCCTCTGGCTTCTTGTCCTCCCCCTCCTCGTCGGCC
TTCTCTTTGAACTGGTCTTAGTCATTCCTGCTCGTGTCCCCATCGACGAG
ACGCCTCTCATCCCTTTCTACGAGGCCTGGGCTCTCGGCCTCGTCTTCCT
CAAAATCCAAGCCCGCTGCCTCCTTCTAGGTCTCTACGGTAACGACCACC
CTTGGAAACGAAAATTTGAACGTGTCCGTGCCAACGGCTTTCGGCGCCTA
GAGTTTCGGTGGACCTTGACTCAGGTCGTCCTTCCTCTCCTCCTCCTCTT
CCTCTCCCTCCTTCTCACCCCCTACTTTCTCAGCAAAACCGTCGAGAAAC
TCGCACATCTCTACCTCCGACACGGCCTCGGCGGGCCCATGCCGCACCCT
GCCCTCCCTCGCTTCCTCGCTCGCTTTCTCGCCCCTGTCTGGTACCGGCA
ACAGCAGCAGCGGGACATACACGAGGCTTCGATCCTACTTTTGGTGGCGG
GAATAAAGAGATACGCGTTTTTATACTACGCCTTGTATCGTGGTAGTGTG
AGGGTTTGGCTGTGGGTAGAGAAGGGCTGGAAGCAGCTGCATGACAGGTT
GAGAGATGACGCTTATTTGGTGGGGATGGAGTTGAAGAATTACTCGCAGG
AAGAAGGGAGGGAGGAGGGGTAGATGGACACCTTACGACAGCTACAGCTG
CAACACCCGCACCAGCAACAACCACAGCAGCCCCCACAGCGAGGAAATGG
AGGCGAGGAACGGATCGGTGGTGGCAATGGTCGTGCGGTTGCTGCTGCTG
GTGCTCCTCCTGCTCCTCCTCTGGCTGCGCCTCTGCCTCTTATCATTCGT
CCCGAGCCTACCGAGGGCGAAGGCGGGAGGGAAGAAAGGAAGGAGGAAGG
CGCCCTAACTTTTTACCCTTTACGGGTCGTGGGGCTGTGTATTTCCATGT
GTGTGTGCATCGCAGTCGTGGCCTCCCTGGTGGTGCAAGTGCCCTTGAGG
GTGGGGAGAGAGGGCCTGCGCCGTCTAGGGCTACCTACCGGTCACGATCT
GTATAACCTGGCCGTGGGATTCCTTCTTGTGGTGTTGGTGGGCTCGGTGC
TGGGGAAAGGGTGGCAGGTATTTGTCGGGGGTGAAGGAGGAGGGGGGGGG
GAAGCAGTGAGAGCAGGAGCAGCAGGAGGAGTCCAGGGAGCGCCTGCCAT
GGTGGTGGCTGAGGGAGAAGAGCGAGCAGGAGGAGGTCGACCGCAATTAC
AACAGCAGCGGCAGGAAGAGGGGCAGGAGCAGGAAGACCGCCGAGATCAG
GAGGAGAAAGAGCAGGAGGATGGAGG back to top
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