Properties
| Property Name | Value |
|---|
| TranscriptId | 671666 |
| Track | FilteredModels2 |
| ProteinId | 671580 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:725553..727331 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5555 ID=mRNA_5555|Name=jgi.p|Nanoce1779_2|671580|organism=Nannochloropsis oceanica|type=mRNA|length=1229bp
ATGCAGATGCGCTGCGCCTGTCGCCTGTCTGTCGCCTGCGCAGCCCCGCC
CGACTCCATTATGACGGTCCTGTCACCCCGGCCTAGCAAGGCGCAGGCTC
GGTGGAATCTCCTTCGGCAAGCCATCCTATCATCAGCAGGCTCCTCCTCC
CCTGCCTCCTCCTCTTTGCCGCCGCATACCGCCGCCCTTGTCTCCCACCG
CCCTGAGAATGTCGGCGTCGACAACACCGGCAATGTGCGAGTGTGGCCGG
CGGAAGAGGCGCTACTCTTACTGCTGCTGAAGAAAGGCCTGGACAGACAG
ACTGGCATCAGGAGGCGGCCAAGGCGCATTCTTGAACTGGGCGCGGGCTG
CACGGGTTTGCTCGGTTTGGGGCTAGCCATGGCTTGGGGTGGTAATAGCT
TGAATGGCGGTCCCTCCACCCCTTGGGCGAAGGTCGAGGTGCAGAGGTTG
GTATGGAAGGAGGAAGGGGAGCAGGAAATAAAAGATTGCGATATGACGCA
GAAATGTCACAGGCAACTCCATGACAATCATACGGACGAAAAGAGCCATC
ACCAAGGCTGCTGTGAGCCCTTTGATCTCATCGTGGCGGCAGATGTCCTC
TTCTTCGAGCGCTTCCATCGCGCCCTCCTTCACACCCTCCACACACACTT
GCATCCCGAGGGAGGCGAGGCTTGGTTCTTGCAGCCGTCGCGGGGGGGGT
CTTTGGAAAGATTCATTGCACTAGTGAAGGAGGAAGGGGGATGGGAAGTG
GTGTGGGAGGGAGAGAGGGGTGGGATGCAGACGGGAGGTGATGACTGTGA
TTATGTGGAGAGTGCCCCGTTGCAGCTGCTCAAATTGCGGTGTACGCGGC
AATCTGACGGCGGAATCGATCAGAGTATAACTTATGTTGCTAGCTAATGG
AGTGTGTAGTTGTCCCAAGTACCCACATGCAACGTTGCTTCCATCTCGCC
TTCCTACGAATGCATGTTCATTCACGATATAGCACATTACGTCACCACGT
TGTGGCCGGTAGAGCGCAGGAAACAGATGATGAAGATTAACAATCAATGA
CAGGGCGCCCTGTACGTATGGACATGCCAGAAGCTTCATGGTGAAGAGGC
TAGTCTCAAAAAGACTTTGCCCATTGCATTTCTCATAAGTAAACCTGCCC
TTGAACTTTGCGCCGTTAACAACAAAATTTAATAGGGAGGTCCGTCATGG
TGATTACAACTAATGTGGGTTGAGTGCGG back to topprotein sequence of jgi.p|Nanoce1779_2|671580 >mRNA_5555-protein ID=mRNA_5555-protein|Name=jgi.p|Nanoce1779_2|671580|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MQMRCACRLSVACAAPPDSIMTVLSPRPSKAQARWNLLRQAILSSAGSSS
PASSSLPPHTAALVSHRPENVGVDNTGNVRVWPAEEALLLLLLKKGLDRQ
TGIRRRPRRILELGAGCTGLLGLGLAMAWGGNSLNGGPSTPWAKVEVQRL
VWKEEGEQEIKDCDMTQKCHRQLHDNHTDEKSHHQGCCEPFDLIVAADVL
FFERFHRALLHTLHTHLHPEGGEAWFLQPSRGGSLERFIALVKEEGGWEV
VWEGERGGMQTGGDDCDYVESAPLQLLKLRCTRQSDGGIDQSITYVAS* back to topmRNA from alignment at scaffold_13:725553..727331+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5555 ID=mRNA_5555|Name=jgi.p|Nanoce1779_2|671580|organism=Nannochloropsis oceanica|type=mRNA|length=1779bp|location=Sequence derived from alignment at scaffold_13:725553..727331+ (Nannochloropsis oceanica)
ATGCAGATGCGCTGCGCCTGTCGCCTGTCTGTCGCCTGTATAGTTTAGAG
AGGTCGGAGGGGGATGAAGAACATACTCGCCAAAAAAGGACAACGACGAC
CTCCTCCCTCACACGGCACGGCACTCTATATACCACCTACCCTCCCACTC
TCCCACTACACCACACAGGCGCAGCCCCGCCCGACTCCATTATGACGGTC
CTGTCACCCCGGCCTAGCAAGGCGCAGGCTCGGTGGAATCTCCTTCGGCA
AGCCATCCTATCATCAGCAGGCTCCTCCTCCCCTGCCTCCTCCTCTTTGC
CGCCGCATACCGGTGGCATCAGGACGTACACGTTTCATCTTCCATGTCCT
TCCACGTCATCGCCATTGCCTCTAACCATTGCTCTTCAACTCATCACGCC
AAGCCCTCCTTCGACCCTCTCCTCGGCCTGCCCCTTGTCCTCCCCATTAG
CCGCCCTTGTCTCCCACCGCCCTGAGAATGTCGGCGTCGACAACACCGGC
AATGTGCGAGTGTGGCCGGCGGAAGAGGCGCTACTCTTACTGCTGCTGAA
GAAAGGTATGGAACTGAATGGCTATTGTATGGCGCGGCTTACTTGTATAC
CCAGGGCAAAGCAACGAACAAGGCCTCAAGAATCTCATCTCCTACCCTCC
CCTTCTCCCAAGGCCTGGACAGACAGACTGGCATCAGGAGGCGGCCAAGG
CGCATTCTTGAACTGGGCGCGGGCTGCACGGGTTTGCTCGGTTTGGGGCT
AGCCATGGCTTGGGGTGGTAATAGCTTGAATGGCGGTCCCTCCACCCCTT
GTACGGTAATCACACAAGCTAACTCTCCACCATCAACGACAACACCCGCT
CATTCAGAATTCGTGCCATCAGACGCCGACCGATCGCTGTATGTGTGCCT
TACTGACGGGCATCCAGACTGTCTCTCTTCCCTCCGTAAATGCGTCGCAC
TGAACAAAACCCGACTCCCATCAGGGGCGAAGGTCGAGGTGCAGAGGTTG
GTATGGAAGGAGGAAGGGGAGCAGGAAATAAAAGATTGCGATATGACGCA
GAAATGTCACAGGCAACTCCATGACAATCATACGGACGAAAAGAGCCATC
ACCAAGGCTGCTGTGAGCCCTTTGATCTCATCGTGGCGGCAGATGTCCTC
TTCTTCGAGCGCTTCCATCGCGCCCTCCTTCACACCCTCCACACACACTT
GCATCCCGAGGGAGGCGAGGCTTGGTTCTTGCAGCCGTCGCGGGGGGGGT
CTTTGGAAAGATTCATTGCACTAGTGAAGGAGGAAGGGGGATGGGAAGTG
GTGTGGGAGGGAGAGAGGGGTGGGATGCAGACGGGAGGTGATGACTGTGA
TTATGTGGAGAGTGCCCCGTTGCAGCTGCTCAAATTGCGGTGTACGCGGC
AATCTGACGGCGGAATCGATCAGAGTATAACTTATGTTGCTAGCTAATGG
AGTGTGTAGTTGTCCCAAGTACCCACATGCAACGTTGCTTCCATCTCGCC
TTCCTACGAATGCATGTTCATTCACGATATAGCACATTACGTCACCACGT
TGTGGCCGGTAGAGCGCAGGAAACAGATGATGAAGATTAACAATCAATGA
CAGGGCGCCCTGTACGTATGGACATGCCAGAAGCTTCATGGTGAAGAGGC
TAGTCTCAAAAAGACTTTGCCCATTGCATTTCTCATAAGTAAACCTGCCC
TTGAACTTTGCGCCGTTAACAACAAAATTTAATAGGGAGGTCCGTCATGG
TGATTACAACTAATGTGGGTTGAGTGCGG back to topCoding sequence (CDS) from alignment at scaffold_13:725553..727331+ >mRNA_5555 ID=mRNA_5555|Name=jgi.p|Nanoce1779_2|671580|organism=Nannochloropsis oceanica|type=CDS|length=4485bp|location=Sequence derived from alignment at scaffold_13:725553..727331+ (Nannochloropsis oceanica)
ATGCAGATGCGCTGCGCCTGTCGCCTGTCTGTCGCCTGCGCAGCCCCGCC
CGACTCCATTATGACGGTCCTGTCACCCCGGCCTAGCAAGGCGCAGGCTC
GGTGGAATCTCCTTCGGCAAGCCATCCTATCATCAGCAGGCTCCTCCTCC
CCTGCCTCCTCCTCTTTGCCGCCGCATACCGCCGCCCTTGTCTCCCACCG
CCCTGAGAATGTCGGCGTCGACAACACCGGCAATGTGCGAGTGTGGCCGG
CGGAAGAGGCGCTACTCTTACTGCTGCTGAAGAAAGGCCTGGACAGACAG
ACTGGCATCAGGAGGCGGCCAAGGCGCATTCTTGAACTGGGCGCGGGCTG
CACGGGTTTGCTCGGTTTGGGGCTAGCCATGGCTTGGGGTGGTAATAGCT
TGAATGGCGGTCCCTCCACCCCTTGGGCGAAGGTCGAGGTGCAGAGGTTG
GTATGGAAGGAGGAAGGGGAGCAGGAAATAAAAGATTGCGATATGACGCA
GAAATGTCACAGGCAACTCCATGACAATCATACGGACGAAAAGAGCCATC
ACCAAGGCTGCTGTGAGCCCTTTGATCTCATCGTGGCGGCAGATGTCCTC
TTCTTCGAGCGCTTCCATCGCGCCCTCCTTCACACCCTCCACACACACTT
GCATCCCGAGGGAGGCGAGGCTTGGTTCTTGCAGCCGTCGCGGGGGGGGT
CTTTGGAAAGATTCATTGCACTAGTGAAGGAGGAAGGGGGATGGGAAGTG
GTGTGGGAGGGAGAGAGGGGTGGGATGCAGACGGGAGGTGATGACTGTGA
TTATGTGGAGAGTGCCCCGTTGCAGCTGCTCAAATTGCGGTGTACGCGGC
AATCTGACGGCGGAATCGATCAGAGTATAACTTATGTTGCTAGCTAAATG
CAGATGCGCTGCGCCTGTCGCCTGTCTGTCGCCTGCGCAGCCCCGCCCGA
CTCCATTATGACGGTCCTGTCACCCCGGCCTAGCAAGGCGCAGGCTCGGT
GGAATCTCCTTCGGCAAGCCATCCTATCATCAGCAGGCTCCTCCTCCCCT
GCCTCCTCCTCTTTGCCGCCGCATACCGCCGCCCTTGTCTCCCACCGCCC
TGAGAATGTCGGCGTCGACAACACCGGCAATGTGCGAGTGTGGCCGGCGG
AAGAGGCGCTACTCTTACTGCTGCTGAAGAAAGGCCTGGACAGACAGACT
GGCATCAGGAGGCGGCCAAGGCGCATTCTTGAACTGGGCGCGGGCTGCAC
GGGTTTGCTCGGTTTGGGGCTAGCCATGGCTTGGGGTGGTAATAGCTTGA
ATGGCGGTCCCTCCACCCCTTGGGCGAAGGTCGAGGTGCAGAGGTTGGTA
TGGAAGGAGGAAGGGGAGCAGGAAATAAAAGATTGCGATATGACGCAGAA
ATGTCACAGGCAACTCCATGACAATCATACGGACGAAAAGAGCCATCACC
AAGGCTGCTGTGAGCCCTTTGATCTCATCGTGGCGGCAGATGTCCTCTTC
TTCGAGCGCTTCCATCGCGCCCTCCTTCACACCCTCCACACACACTTGCA
TCCCGAGGGAGGCGAGGCTTGGTTCTTGCAGCCGTCGCGGGGGGGGTCTT
TGGAAAGATTCATTGCACTAGTGAAGGAGGAAGGGGGATGGGAAGTGGTG
TGGGAGGGAGAGAGGGGTGGGATGCAGACGGGAGGTGATGACTGTGATTA
TGTGGAGAGTGCCCCGTTGCAGCTGCTCAAATTGCGGTGTACGCGGCAAT
CTGACGGCGGAATCGATCAGAGTATAACTTATGTTGCTAGCTAAATGCAG
ATGCGCTGCGCCTGTCGCCTGTCTGTCGCCTGCGCAGCCCCGCCCGACTC
CATTATGACGGTCCTGTCACCCCGGCCTAGCAAGGCGCAGGCTCGGTGGA
ATCTCCTTCGGCAAGCCATCCTATCATCAGCAGGCTCCTCCTCCCCTGCC
TCCTCCTCTTTGCCGCCGCATACCGCCGCCCTTGTCTCCCACCGCCCTGA
GAATGTCGGCGTCGACAACACCGGCAATGTGCGAGTGTGGCCGGCGGAAG
AGGCGCTACTCTTACTGCTGCTGAAGAAAGGCCTGGACAGACAGACTGGC
ATCAGGAGGCGGCCAAGGCGCATTCTTGAACTGGGCGCGGGCTGCACGGG
TTTGCTCGGTTTGGGGCTAGCCATGGCTTGGGGTGGTAATAGCTTGAATG
GCGGTCCCTCCACCCCTTGGGCGAAGGTCGAGGTGCAGAGGTTGGTATGG
AAGGAGGAAGGGGAGCAGGAAATAAAAGATTGCGATATGACGCAGAAATG
TCACAGGCAACTCCATGACAATCATACGGACGAAAAGAGCCATCACCAAG
GCTGCTGTGAGCCCTTTGATCTCATCGTGGCGGCAGATGTCCTCTTCTTC
GAGCGCTTCCATCGCGCCCTCCTTCACACCCTCCACACACACTTGCATCC
CGAGGGAGGCGAGGCTTGGTTCTTGCAGCCGTCGCGGGGGGGGTCTTTGG
AAAGATTCATTGCACTAGTGAAGGAGGAAGGGGGATGGGAAGTGGTGTGG
GAGGGAGAGAGGGGTGGGATGCAGACGGGAGGTGATGACTGTGATTATGT
GGAGAGTGCCCCGTTGCAGCTGCTCAAATTGCGGTGTACGCGGCAATCTG
ACGGCGGAATCGATCAGAGTATAACTTATGTTGCTAGCTAAATGCAGATG
CGCTGCGCCTGTCGCCTGTCTGTCGCCTGCGCAGCCCCGCCCGACTCCAT
TATGACGGTCCTGTCACCCCGGCCTAGCAAGGCGCAGGCTCGGTGGAATC
TCCTTCGGCAAGCCATCCTATCATCAGCAGGCTCCTCCTCCCCTGCCTCC
TCCTCTTTGCCGCCGCATACCGCCGCCCTTGTCTCCCACCGCCCTGAGAA
TGTCGGCGTCGACAACACCGGCAATGTGCGAGTGTGGCCGGCGGAAGAGG
CGCTACTCTTACTGCTGCTGAAGAAAGGCCTGGACAGACAGACTGGCATC
AGGAGGCGGCCAAGGCGCATTCTTGAACTGGGCGCGGGCTGCACGGGTTT
GCTCGGTTTGGGGCTAGCCATGGCTTGGGGTGGTAATAGCTTGAATGGCG
GTCCCTCCACCCCTTGGGCGAAGGTCGAGGTGCAGAGGTTGGTATGGAAG
GAGGAAGGGGAGCAGGAAATAAAAGATTGCGATATGACGCAGAAATGTCA
CAGGCAACTCCATGACAATCATACGGACGAAAAGAGCCATCACCAAGGCT
GCTGTGAGCCCTTTGATCTCATCGTGGCGGCAGATGTCCTCTTCTTCGAG
CGCTTCCATCGCGCCCTCCTTCACACCCTCCACACACACTTGCATCCCGA
GGGAGGCGAGGCTTGGTTCTTGCAGCCGTCGCGGGGGGGGTCTTTGGAAA
GATTCATTGCACTAGTGAAGGAGGAAGGGGGATGGGAAGTGGTGTGGGAG
GGAGAGAGGGGTGGGATGCAGACGGGAGGTGATGACTGTGATTATGTGGA
GAGTGCCCCGTTGCAGCTGCTCAAATTGCGGTGTACGCGGCAATCTGACG
GCGGAATCGATCAGAGTATAACTTATGTTGCTAGCTAAATGCAGATGCGC
TGCGCCTGTCGCCTGTCTGTCGCCTGCGCAGCCCCGCCCGACTCCATTAT
GACGGTCCTGTCACCCCGGCCTAGCAAGGCGCAGGCTCGGTGGAATCTCC
TTCGGCAAGCCATCCTATCATCAGCAGGCTCCTCCTCCCCTGCCTCCTCC
TCTTTGCCGCCGCATACCGCCGCCCTTGTCTCCCACCGCCCTGAGAATGT
CGGCGTCGACAACACCGGCAATGTGCGAGTGTGGCCGGCGGAAGAGGCGC
TACTCTTACTGCTGCTGAAGAAAGGCCTGGACAGACAGACTGGCATCAGG
AGGCGGCCAAGGCGCATTCTTGAACTGGGCGCGGGCTGCACGGGTTTGCT
CGGTTTGGGGCTAGCCATGGCTTGGGGTGGTAATAGCTTGAATGGCGGTC
CCTCCACCCCTTGGGCGAAGGTCGAGGTGCAGAGGTTGGTATGGAAGGAG
GAAGGGGAGCAGGAAATAAAAGATTGCGATATGACGCAGAAATGTCACAG
GCAACTCCATGACAATCATACGGACGAAAAGAGCCATCACCAAGGCTGCT
GTGAGCCCTTTGATCTCATCGTGGCGGCAGATGTCCTCTTCTTCGAGCGC
TTCCATCGCGCCCTCCTTCACACCCTCCACACACACTTGCATCCCGAGGG
AGGCGAGGCTTGGTTCTTGCAGCCGTCGCGGGGGGGGTCTTTGGAAAGAT
TCATTGCACTAGTGAAGGAGGAAGGGGGATGGGAAGTGGTGTGGGAGGGA
GAGAGGGGTGGGATGCAGACGGGAGGTGATGACTGTGATTATGTGGAGAG
TGCCCCGTTGCAGCTGCTCAAATTGCGGTGTACGCGGCAATCTGACGGCG
GAATCGATCAGAGTATAACTTATGTTGCTAGCTAA back to top
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