jgi.p|Nanoce1779_2|592923, mRNA_5553 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592923
Unique NamemRNA_5553
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1262
Alignment locationscaffold_13:710058..711319 -

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Properties
Property NameValue
TranscriptId593009
TrackFilteredModels2
ProteinId592923
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:710058..711319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592923gene_5553Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592923mRNA_5553-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5553CDS_5553Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5553 ID=mRNA_5553|Name=jgi.p|Nanoce1779_2|592923|organism=Nannochloropsis oceanica|type=mRNA|length=1262bp
TCGCCAACAAGAGGCGTTGCTGCAGGTTCTGCCTGCGTCCCTCTCTTTGT
GACCGCGCGACACGGCACCACCACAGGACGAAGCACAACACCACCGCCCC
GGCGCGCATGTAGAAGAATGTTTGCGCATTCAGGAAGGCGGGTCGGAGTA
ACTTGGACATCTAAAGGAGCAAGACAGAACCCGGCGTTTACACCATCATC
CCAAGGAGAAGCACCTTTTGAGGCTTCCCTGAAATTCTGGCCTTGCCCTC
ATGGCCAGCGCGCCGCAAATCACACACCCAACGCCCCAAGGCTTTTGGGG
AACCTCACCTGCATTATATCATCCTTACGCACACACTTCCAACACAGGCA
GGCCAGGCACCCACACCCTGTGCCCGTCCTAGCCGTCATCGTCTTCCCCG
TGTGCGTCGCCCAGCTTCATTCCATTCCAACTCCATCCTCGACCTCAACC
CCTGCACACGCAAGCCATTATCATGGGTCAATCAAAGTAAGTATTGTTTC
TATCAATATAGCCATGCTTGCGAGCATCCTGCTCTTTTTTCGCTCCAGCA
CCCATGCTCCCCATGTCTGCCGGCGGCCTTGGCTCGTGCCCTCATCATCG
ACCCCCCCATCGTTTTTACCCAACCAAGGCCCTTCCCTTTTAAGCTCGTC
ATCCCTGTAAAGTGGTCGAACCCCCCCCCTCCCCCTTTTGCAATACGAGT
GCACACTCAACACTTGATATAAGCGTGTGCATATTCACCATCCCTGTCCC
CGTGTCCCTCACTTTCCAATCTCCCCCTCTCTTTTTCACCCTTCCTCTTC
CTCCTTCATCCTTCTCCTCCTCACTCACTTCCTCTTCCTTTTTCATCCAA
CCAGCCACCACCGTCATTGGTGAGAGACATGATATCATTTCTTGTCTCCC
CCCCTCCCCTCAAACGTATATCGGCCTTGTCTTCCCATAATTAAACACCT
TCACTCACCCCTTCCTCATCCCTTCTCTCCCTCCTTCATCCCGATGGCAG
AGGCGGAAACGTAAATATGCAATTGGATCGATACCTCCGCTTCATGGGGA
AACACCGCAACAGCCCCGCTGCCGCGTGGGTCGGGTTTTTGCTCCTCTCC
CTCGTGGTTTGGAAGCTAGTGAGTGACGGTGACTTTTCCTTCATCATGAC
GTATGGTGCCTTTGCCCGGTCCTTCGGCTTTGGCCTGTTGGCTGTTAAGA
TATGGACGGCCAGAAGTGCTACGGGGGTGTCGTTAAAGACCCTGCAGTTG
TATGGCCTGGTG
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protein sequence of jgi.p|Nanoce1779_2|592923

>mRNA_5553-protein ID=mRNA_5553-protein|Name=jgi.p|Nanoce1779_2|592923|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MFAHSGRRVGVTWTSKGARQNPAFTPSSQGEAPFEASLKFWPCPHGQRAA
NHTPNAPRLLGNLTCIISSLRTHFQHRQARHPHPVPVLAVIVFPVCVAQL
HSIPTPSSTSTPAHASHYHGSIKVSIVSINIAMLASILLFFRSSTHAPHV
CRRPWLVPSSSTPPSFLPNQGPSLL
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mRNA from alignment at scaffold_13:710058..711319-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5553 ID=mRNA_5553|Name=jgi.p|Nanoce1779_2|592923|organism=Nannochloropsis oceanica|type=mRNA|length=1262bp|location=Sequence derived from alignment at scaffold_13:710058..711319- (Nannochloropsis oceanica)
TCGCCAACAAGAGGCGTTGCTGCAGGTTCTGCCTGCGTCCCTCTCTTTGT
GACCGCGCGACACGGCACCACCACAGGACGAAGCACAACACCACCGCCCC
GGCGCGCATGTAGAAGAATGTTTGCGCATTCAGGAAGGCGGGTCGGAGTA
ACTTGGACATCTAAAGGAGCAAGACAGAACCCGGCGTTTACACCATCATC
CCAAGGAGAAGCACCTTTTGAGGCTTCCCTGAAATTCTGGCCTTGCCCTC
ATGGCCAGCGCGCCGCAAATCACACACCCAACGCCCCAAGGCTTTTGGGG
AACCTCACCTGCATTATATCATCCTTACGCACACACTTCCAACACAGGCA
GGCCAGGCACCCACACCCTGTGCCCGTCCTAGCCGTCATCGTCTTCCCCG
TGTGCGTCGCCCAGCTTCATTCCATTCCAACTCCATCCTCGACCTCAACC
CCTGCACACGCAAGCCATTATCATGGGTCAATCAAAGTAAGTATTGTTTC
TATCAATATAGCCATGCTTGCGAGCATCCTGCTCTTTTTTCGCTCCAGCA
CCCATGCTCCCCATGTCTGCCGGCGGCCTTGGCTCGTGCCCTCATCATCG
ACCCCCCCATCGTTTTTACCCAACCAAGGCCCTTCCCTTTTAAGCTCGTC
ATCCCTGTAAAGTGGTCGAACCCCCCCCCTCCCCCTTTTGCAATACGAGT
GCACACTCAACACTTGATATAAGCGTGTGCATATTCACCATCCCTGTCCC
CGTGTCCCTCACTTTCCAATCTCCCCCTCTCTTTTTCACCCTTCCTCTTC
CTCCTTCATCCTTCTCCTCCTCACTCACTTCCTCTTCCTTTTTCATCCAA
CCAGCCACCACCGTCATTGGTGAGAGACATGATATCATTTCTTGTCTCCC
CCCCTCCCCTCAAACGTATATCGGCCTTGTCTTCCCATAATTAAACACCT
TCACTCACCCCTTCCTCATCCCTTCTCTCCCTCCTTCATCCCGATGGCAG
AGGCGGAAACGTAAATATGCAATTGGATCGATACCTCCGCTTCATGGGGA
AACACCGCAACAGCCCCGCTGCCGCGTGGGTCGGGTTTTTGCTCCTCTCC
CTCGTGGTTTGGAAGCTAGTGAGTGACGGTGACTTTTCCTTCATCATGAC
GTATGGTGCCTTTGCCCGGTCCTTCGGCTTTGGCCTGTTGGCTGTTAAGA
TATGGACGGCCAGAAGTGCTACGGGGGTGTCGTTAAAGACCCTGCAGTTG
TATGGCCTGGTG
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Coding sequence (CDS) from alignment at scaffold_13:710058..711319-

>mRNA_5553 ID=mRNA_5553|Name=jgi.p|Nanoce1779_2|592923|organism=Nannochloropsis oceanica|type=CDS|length=526bp|location=Sequence derived from alignment at scaffold_13:710058..711319- (Nannochloropsis oceanica)
ATGTTTGCGCATTCAGGAAGGCGGGTCGGAGTAACTTGGACATCTAAAGG
AGCAAGACAGAACCCGGCGTTTACACCATCATCCCAAGGAGAAGCACCTT
TTGAGGCTTCCCTGAAATTCTGGCCTTGCCCTCATGGCCAGCGCGCCGCA
AATCACACACCCAACGCCCCAAGGCTTTTGGGGAACCTCACCTGCATTAT
ATCATCCTTACGCACACACTTCCAACACAGGCAGGCCAGGCACCCACACC
CTGTGCCCGTCCTAGCCGTCATCGTCTTCCCCGTGTGCGTCGCCCAGCTT
CATTCCATTCCAACTCCATCCTCGACCTCAACCCCTGCACACGCAAGCCA
TTATCATGGGTCAATCAAAGTAAGTATTGTTTCTATCAATATAGCCATGC
TTGCGAGCATCCTGCTCTTTTTTCGCTCCAGCACCCATGCTCCCCATGTC
TGCCGGCGGCCTTGGCTCGTGCCCTCATCATCGACCCCCCCATCGTTTTT
ACCCAACCAAGGCCCTTCCCTTTTAA
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Synonyms
Publications