jgi.p|Nanoce1779_2|592919, mRNA_5552 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592919
Unique NamemRNA_5552
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1470
Alignment locationscaffold_13:707525..710081 -

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Properties
Property NameValue
TranscriptId593005
TrackFilteredModels2
ProteinId592919
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:707525..710081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592919gene_5552Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592919mRNA_5552-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5552CDS_5552Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5552 ID=mRNA_5552|Name=jgi.p|Nanoce1779_2|592919|organism=Nannochloropsis oceanica|type=mRNA|length=1470bp
ACCCTGCAGTTGTATGGCCTGTCCTCGTGGCCCTCTACCCTCGTCAAGAT
TCGCTTCCCCCACTCATACGACGAGCGAACGGACAGTTTCGGGAACATGC
ACGTCCCGGATCAAGTCGGCCTCAATTCGCATTTCCTCGCCGACACCACC
TGGGCCTTTTCCATGTACCTCGAGTCCGTTGCCATGCTCCCTCAGCTCTA
CATGTTCCAAAAACAGTCCTCCCAAGTCGTGGAGGTGCTCATCGGCCACT
GGGTCTTTGCCTCGGGTTTTGCGCGAGTCCTGGACATGATCTTTTGGATG
TCGTCTTACCACGAGCTGGTCGACCACAGCGGGTCCAAGATGGTGGGTGT
CTTCGTCCTCCTCACGCAGTTTATTCACATCATCCTCATGGTGGATTTTT
TCTATTACTACCTCGTGAGCGTACGGAGCGGTCTTCCCCTTCAATTGCCA
AGGGCAGGGGGGCTGGTGTAGATGACTTTAGGAGTGGAGGGAGGGAGGAA
AGGAGTCAGGGAAAGACAGGAAGGAAGGAGGCGGTGTAGATGAGTCTCAG
AAAGGGAAGGAAGACAGGAAGGAGGGAGGGAGGAGGAGGAGACCCTTTTT
ATTCCTCGGCTTGGCTCTCGGATCCTCTCTTTGTTGAAGGAGGGAGGGAA
GGGATGGAGGGAGGGAAGGAGGGAAGGTTAGTGCAGAGAGAGAGGGAGCT
AGGAAATCGTGGTCTTTGTCTTGTATTCATTTTGAAAGGGTGTGATAGAG
GGAAGGAGGAGGGAAGAAAGGAGGGGAGAAAGGAGGGGGGGGAAGATGGC
AGGCGAGCAAGCACAAAAGCCTGCCCTCCCACATACGCACTCAATCCTCC
TCGGCCTCGCCCTTTCCTTCCCTTCCCTTCCTCCTTCTCCCCTATCTCCC
CTCCTTCCTCCTCCCTTTCCATGACCAAGCGAGGACGTGCAAAGCAGAAG
ATGGGAAGGAGGGGAAGAAAACGCAAGAAAAAAAGAAGAAGAAAACGATG
ACGACCAAGCAGTAGCAGAAGCAGACAAGCGAGTAGAATAGCGGGGTCCC
TGATCCATTTCGAAGAAAGAAAATCACACACATGGGAAGTCGATAACCTC
AATTCAATCTATTCCTCGACGCTCGCATGCAAAATATCTGCTGCCTCCCC
TTTTGTCATGCGGTTGTCATGCTAAGCCTGCTCGTCCTACCCCACCGCGC
TTTGCCGTCTCCCCCTTCAAGGAAAAAGACACTGTGGCAAGACCAAGAGA
AGATACTGAAACCGATGTACAAGTAGTAGCGTTAGAGACGGCACTCCTTT
CCTTCCCTTCCCTTCCCTTAATCCCCTTTCATTTTCTCTTTTTTTGTGTC
TACTCTTCGCGTTACACGTTTCACCCACTCATGCAGAGACGGTCGATCTA
AGTCGTTTCTTATATTCCCTATCTACCTAGTTTATTGCACGTGGTAACTG
CCAGGACCACAACTCCTCGT
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protein sequence of jgi.p|Nanoce1779_2|592919

>mRNA_5552-protein ID=mRNA_5552-protein|Name=jgi.p|Nanoce1779_2|592919|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
SSWPSTLVKIRFPHSYDERTDSFGNMHVPDQVGLNSHFLADTTWAFSMYL
ESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELV
DHSGSKMVGVFVLLTQFIHIILMVDFFYYYLVSVRSGLPLQLPRAGGLV*
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mRNA from alignment at scaffold_13:707525..710081-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5552 ID=mRNA_5552|Name=jgi.p|Nanoce1779_2|592919|organism=Nannochloropsis oceanica|type=mRNA|length=2557bp|location=Sequence derived from alignment at scaffold_13:707525..710081- (Nannochloropsis oceanica)
ACCCTGCAGTTGTATGGCCTGGTGCGTTAGAGGGCGAGGGAGGGGAGGGA
GGGACGAAGGGAGGGAGGGAAGGTTACGGCGGCGTTTCGACTTCGGTGTT
TGTTTATGGGTGGGATGCCGTGTGACTCACCCTCGTTCCCTCCCTCCCTC
CCCCCCTCCCTCTTGTCCGCCTTGATATCACGCACGGCCAGGTGTTCTTC
TTCCGCCTCACGAGCATCATCCCTTTCTCGGGCTACCTGCCCTACGACAA
GAGCGGCGACTGGTTCTATCATTTTGTGGTACGTGCGCCTGCGAGGCAGG
GACGGAGGGAGGGGGGGAAGGACGGAGGGAAGCAGTGGAAGGAGGGCAGA
TTGGAACGAAAAGGGAAAGAAACATGAAGCAAGATTTGACTACTCAGCCA
CCCCTCTCTCCCTCCTCCCTCGTCCTCCCTCCCTCCTTCCCTTCCCCCCT
CCTTTTCTCCTCCCAGGAGTCCGTCTCTCTCTTCCTAGTCCTCGTGGCCC
TCTACCCTCGTCAAGATTCGCTTCCCCCACTCATACGACGAGCGAACGGA
CAGTTTCGGGAACATGCACGTCCCGGATCAAGTCGGTGCCCTGGTCTATC
TCGCCATACCCTGTTTTCCTCCTGGCCGTCCTGTTTCATCCGGGTAGGTT
GCTGTCTGTCTGTCTGTCTGTGTCTGTCTGTCTGTGTGTGTGTGTGTGTG
TGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTTTCTCTCTCTCTCTCTCTCTGTGTTAGTGTGCATGTCAAAT
CCCCTCTCTCCCTCCTCCATCTCCCCCCCCCTCCCAATGCCAGGCATCCA
CCCCCCCCTCCCTCCCTCCTCCCCCCCTTCCTCCCCCCCTCCCTCCCTCC
CTCCCCCCCTTCCTCCCCCCAGGCCTCAATTCGCATTTCCTCGCCGACAC
CACCTGGGCCTTTTCCATGTACCTCGAGTCCGTTGCCATGCTCCCTCAGC
TCTACATGTTCCAAAAACAGGTGCGCCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCAGTCCTCCCAAGTCGTGGAGGGGCTCACCGGCCGAT
GAGTCTTTGCCGCAGGCTTCTCACTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCAGTCCTCCCAAGTCGTGGAGGTGCTCATCGGCCACTGGGTCTTTG
CCTCGGGTTTTGCGCGAGTCCTGGACATGATCTTTTGGATGTCGTCTTAC
CACGAGCTGGTCGACCACAGGTACGCCCTTCCTCCCTCCCTCCCTCCCTC
CCTCTCTTGCCTGGCCTTTGGTTGATCATGGGCGTAAAATCGTTGGTCCA
GGCCGCCTCCATTCTCCCTTCCTTGACCTAACTCCCTCCCCCCCTCCCTC
CCTCCCTCCCTCGCAGCGGGTCCAAGATGGTGGGTGTCTTCGTCCTCCTC
ACGCAGTTTATTCACATCATCCTCATGGTGGATTTTTTCTATTACTACCT
CGTGAGCGTACGGAGCGGTCTTCCCCTTCAATTGCCAAGGGCAGGGGGGC
TGGTGTAGATGACTTTAGGAGTGGAGGGAGGGAGGAAAGGAGTCAGGGAA
AGACAGGAAGGAAGGAGGCGGTGTAGATGAGTCTCAGAAAGGGAAGGAAG
ACAGGAAGGAGGGAGGGAGGAGGAGGAGACCCTTTTTATTCCTCGGCTTG
GCTCTCGGATCCTCTCTTTGTTGAAGGAGGGAGGGAAGGGATGGAGGGAG
GGAAGGAGGGAAGGTTAGTGCAGAGAGAGAGGGAGCTAGGAAATCGTGGT
CTTTGTCTTGTATTCATTTTGAAAGGGTGTGATAGAGGGAAGGAGGAGGG
AAGAAAGGAGGGGAGAAAGGAGGGGGGGGAAGATGGCAGGCGAGCAAGCA
CAAAAGCCTGCCCTCCCACATACGCACTCAATCCTCCTCGGCCTCGCCCT
TTCCTTCCCTTCCCTTCCTCCTTCTCCCCTATCTCCCCTCCTTCCTCCTC
CCTTTCCATGACCAAGCGAGGACGTGCAAAGCAGAAGATGGGAAGGAGGG
GAAGAAAACGCAAGAAAAAAAGAAGAAGAAAACGATGACGACCAAGCAGT
AGCAGAAGCAGACAAGCGAGTAGAATAGCGGGGTCCCTGATCCATTTCGA
AGAAAGAAAATCACACACATGGGAAGTCGATAACCTCAATTCAATCTATT
CCTCGACGCTCGCATGCAAAATATCTGCTGCCTCCCCTTTTGTCATGCGG
TTGTCATGCTAAGCCTGCTCGTCCTACCCCACCGCGCTTTGCCGTCTCCC
CCTTCAAGGAAAAAGACACTGTGGCAAGACCAAGAGAAGATACTGAAACC
GATGTACAAGTAGTAGCGTTAGAGACGGCACTCCTTTCCTTCCCTTCCCT
TCCCTTAATCCCCTTTCATTTTCTCTTTTTTTGTGTCTACTCTTCGCGTT
ACACGTTTCACCCACTCATGCAGAGACGGTCGATCTAAGTCGTTTCTTAT
ATTCCCTATCTACCTAGTTTATTGCACGTGGTAACTGCCAGGACCACAAC
TCCTCGT
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Coding sequence (CDS) from alignment at scaffold_13:707525..710081-

>mRNA_5552 ID=mRNA_5552|Name=jgi.p|Nanoce1779_2|592919|organism=Nannochloropsis oceanica|type=CDS|length=1800bp|location=Sequence derived from alignment at scaffold_13:707525..710081- (Nannochloropsis oceanica)
CGGGTCCAAGATGGTGGGTGTCTTCGTCCTCCTCACGCAGTTTATTCACA
TCATCCTCATGGTGGATTTTTTCTATTACTACCTCGTGAGCGTACGGAGC
GGTCTTCCCCTTCAATTGCCAAGGGCAGGGGGGCTGGTGTAGTCCTCCCA
AGTCGTGGAGGTGCTCATCGGCCACTGGGTCTTTGCCTCGGGTTTTGCGC
GAGTCCTGGACATGATCTTTTGGATGTCGTCTTACCACGAGCTGGTCGAC
CACAGGCCTCAATTCGCATTTCCTCGCCGACACCACCTGGGCCTTTTCCA
TGTACCTCGAGTCCGTTGCCATGCTCCCTCAGCTCTACATGTTCCAAAAA
CAGTCCTCGTGGCCCTCTACCCTCGTCAAGATTCGCTTCCCCCACTCATA
CGACGAGCGAACGGACAGTTTCGGGAACATGCACGTCCCGGATCAAGTCG
CGGGTCCAAGATGGTGGGTGTCTTCGTCCTCCTCACGCAGTTTATTCACA
TCATCCTCATGGTGGATTTTTTCTATTACTACCTCGTGAGCGTACGGAGC
GGTCTTCCCCTTCAATTGCCAAGGGCAGGGGGGCTGGTGTAGTCCTCCCA
AGTCGTGGAGGTGCTCATCGGCCACTGGGTCTTTGCCTCGGGTTTTGCGC
GAGTCCTGGACATGATCTTTTGGATGTCGTCTTACCACGAGCTGGTCGAC
CACAGGCCTCAATTCGCATTTCCTCGCCGACACCACCTGGGCCTTTTCCA
TGTACCTCGAGTCCGTTGCCATGCTCCCTCAGCTCTACATGTTCCAAAAA
CAGTCCTCGTGGCCCTCTACCCTCGTCAAGATTCGCTTCCCCCACTCATA
CGACGAGCGAACGGACAGTTTCGGGAACATGCACGTCCCGGATCAAGTCG
CGGGTCCAAGATGGTGGGTGTCTTCGTCCTCCTCACGCAGTTTATTCACA
TCATCCTCATGGTGGATTTTTTCTATTACTACCTCGTGAGCGTACGGAGC
GGTCTTCCCCTTCAATTGCCAAGGGCAGGGGGGCTGGTGTAGTCCTCCCA
AGTCGTGGAGGTGCTCATCGGCCACTGGGTCTTTGCCTCGGGTTTTGCGC
GAGTCCTGGACATGATCTTTTGGATGTCGTCTTACCACGAGCTGGTCGAC
CACAGGCCTCAATTCGCATTTCCTCGCCGACACCACCTGGGCCTTTTCCA
TGTACCTCGAGTCCGTTGCCATGCTCCCTCAGCTCTACATGTTCCAAAAA
CAGTCCTCGTGGCCCTCTACCCTCGTCAAGATTCGCTTCCCCCACTCATA
CGACGAGCGAACGGACAGTTTCGGGAACATGCACGTCCCGGATCAAGTCG
CGGGTCCAAGATGGTGGGTGTCTTCGTCCTCCTCACGCAGTTTATTCACA
TCATCCTCATGGTGGATTTTTTCTATTACTACCTCGTGAGCGTACGGAGC
GGTCTTCCCCTTCAATTGCCAAGGGCAGGGGGGCTGGTGTAGTCCTCCCA
AGTCGTGGAGGTGCTCATCGGCCACTGGGTCTTTGCCTCGGGTTTTGCGC
GAGTCCTGGACATGATCTTTTGGATGTCGTCTTACCACGAGCTGGTCGAC
CACAGGCCTCAATTCGCATTTCCTCGCCGACACCACCTGGGCCTTTTCCA
TGTACCTCGAGTCCGTTGCCATGCTCCCTCAGCTCTACATGTTCCAAAAA
CAGTCCTCGTGGCCCTCTACCCTCGTCAAGATTCGCTTCCCCCACTCATA
CGACGAGCGAACGGACAGTTTCGGGAACATGCACGTCCCGGATCAAGTCG
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Synonyms
Publications