jgi.p|Nanoce1779_2|566724, mRNA_5551 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566724
Unique NamemRNA_5551
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1095
Alignment locationscaffold_13:706474..707568 +

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Properties
Property NameValue
TranscriptId566810
TrackFilteredModels2
ProteinId566724
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:706474..707568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566724gene_5551Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566724mRNA_5551-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5551CDS_5551Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5551 ID=mRNA_5551|Name=jgi.p|Nanoce1779_2|566724|organism=Nannochloropsis oceanica|type=mRNA|length=1095bp
ATGGTGGACGAGGTCGACTTTGGGAATTTGGCGGGCTCGATCAAACTTGT
CCAACTTTCTTACGGGGCATTCAATGAGAGGTGCAAGACACACAAAGGCG
ACGAGATAGAAGAAGACGGGGACCGTACCGGGCTGCGAGTCTACACTGGG
GCACAAGCCATGGTCCGATTCCTGTACCGCTTCCCATGGCTGATAAAAGG
ACAGCGTGTGGTGGAACTGGGATGTGGGGTGGGCGCCGTGGGACTGTTAG
CGTCCCGATTGGGGCCGACGTGCGTAGTGCTGACGGACGGAAGTGTAGAA
ACGCTGGAACTGACGCAAAGGAACGTGGCTACCTTTCAAGCTTTACCCTC
GTTGTCCCCCGGGTTTTCTCCATCTTCGCACGGAAGTACTTCAGCTGTCG
CCTCCCTTCCCTCCCTTGCTGTGCACAAGCTGCAGTGGGACTCGCACGCT
GCCATCGTTGATTTGTTACACGCGCAAAAAGTGGACAAATTTGATGTTGT
GATAGGCACGGACCTCATGTACTATAACGTAGATGCCTCGGTGGTATTGA
CGGCCGCGACTTGCTTGCTGGATGGGAGGGTAAAAAAAAGAGAAAAAGAA
GGGGGAGGAGGTGGAGGAGGACGAAAGGTGGGAGAAGAGAGCGAACCCCC
ATACAAAGTGAACAAAGATGAGCGAGAAGGGTGTACTAACAGCGGACTTG
CGTTCGGCAAGAGGAGAAGTGAGAGCGAGGGTAAGGGTGGCATCATCCTC
CTCGCGCATATATTCCGCGGAGCCCATCTTCCTTACACACTCTTGGCGGC
CGCAGAGTCCCTGGGATGGGCCTTGTTGGAGGTGCCGATGGAGGAGGTCG
TCTCGGAGGAAGGGGAGGGAGGGGGGGAGGGAAAAGTACCCGGAACAACG
CCGGAGTGGTGGGGGAGCATGTGTGTGTTGGTGGGGGTGAGGGATGGAGG
GAGGGAGGAAGGGAAGGAAGAAATGCTTGCGCGTTTGCCGCAGGGGAGTC
GGGTTTTTGTGCCATATTGGAAGGAGGGAGGGGAGGGAGGGGGGGAAGAA
GACGAGGAGTTGTGGTCCTGGCAGTTACCACGTGCAATAAACTAG
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protein sequence of jgi.p|Nanoce1779_2|566724

>mRNA_5551-protein ID=mRNA_5551-protein|Name=jgi.p|Nanoce1779_2|566724|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MVDEVDFGNLAGSIKLVQLSYGAFNERCKTHKGDEIEEDGDRTGLRVYTG
AQAMVRFLYRFPWLIKGQRVVELGCGVGAVGLLASRLGPTCVVLTDGSVE
TLELTQRNVATFQALPSLSPGFSPSSHGSTSAVASLPSLAVHKLQWDSHA
AIVDLLHAQKVDKFDVVIGTDLMYYNVDASVVLTAATCLLDGRVKKREKE
GGGGGGGRKVGEESEPPYKVNKDEREGCTNSGLAFGKRRSESEGKGGIIL
LAHIFRGAHLPYTLLAAAESLGWALLEVPMEEVVSEEGEGGGEGKVPGTT
PEWWGSMCVLVGVRDGGREEGKEEMLARLPQGSRVFVPYWKEGGEGGGEE
DEELWSWQLPRAIN*
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mRNA from alignment at scaffold_13:706474..707568+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5551 ID=mRNA_5551|Name=jgi.p|Nanoce1779_2|566724|organism=Nannochloropsis oceanica|type=mRNA|length=1095bp|location=Sequence derived from alignment at scaffold_13:706474..707568+ (Nannochloropsis oceanica)
ATGGTGGACGAGGTCGACTTTGGGAATTTGGCGGGCTCGATCAAACTTGT CCAACTTTCTTACGGGGCATTCAATGAGAGGTGCAAGACACACAAAGGCG ACGAGATAGAAGAAGACGGGGACCGTACCGGGCTGCGAGTCTACACTGGG GCACAAGCCATGGTCCGATTCCTGTACCGCTTCCCATGGCTGATAAAAGG ACAGCGTGTGGTGGAACTGGGATGTGGGGTGGGCGCCGTGGGACTGTTAG CGTCCCGATTGGGGCCGACGTGCGTAGTGCTGACGGACGGAAGTGTAGAA ACGCTGGAACTGACGCAAAGGAACGTGGCTACCTTTCAAGCTTTACCCTC GTTGTCCCCCGGGTTTTCTCCATCTTCGCACGGAAGTACTTCAGCTGTCG CCTCCCTTCCCTCCCTTGCTGTGCACAAGCTGCAGTGGGACTCGCACGCT GCCATCGTTGATTTGTTACACGCGCAAAAAGTGGACAAATTTGATGTTGT GATAGGCACGGACCTCATGTACTATAACGTAGATGCCTCGGTGGTATTGA CGGCCGCGACTTGCTTGCTGGATGGGAGGGTAAAAAAAAGAGAAAAAGAA GGGGGAGGAGGTGGAGGAGGACGAAAGGTGGGAGAAGAGAGCGAACCCCC ATACAAAGTGAACAAAGATGAGCGAGAAGGGTGTACTAACAGCGGACTTG CGTTCGGCAAGAGGAGAAGTGAGAGCGAGGGTAAGGGTGGCATCATCCTC CTCGCGCATATATTCCGCGGAGCCCATCTTCCTTACACACTCTTGGCGGC CGCAGAGTCCCTGGGATGGGCCTTGTTGGAGGTGCCGATGGAGGAGGTCG TCTCGGAGGAAGGGGAGGGAGGGGGGGAGGGAAAAGTACCCGGAACAACG CCGGAGTGGTGGGGGAGCATGTGTGTGTTGGTGGGGGTGAGGGATGGAGG GAGGGAGGAAGGGAAGGAAGAAATGCTTGCGCGTTTGCCGCAGGGGAGTC GGGTTTTTGTGCCATATTGGAAGGAGGGAGGGGAGGGAGGGGGGGAAGAA GACGAGGAGTTGTGGTCCTGGCAGTTACCACGTGCAATAAACTAG
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Coding sequence (CDS) from alignment at scaffold_13:706474..707568+

>mRNA_5551 ID=mRNA_5551|Name=jgi.p|Nanoce1779_2|566724|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at scaffold_13:706474..707568+ (Nannochloropsis oceanica)
ATGGTGGACGAGGTCGACTTTGGGAATTTGGCGGGCTCGATCAAACTTGT
CCAACTTTCTTACGGGGCATTCAATGAGAGGTGCAAGACACACAAAGGCG
ACGAGATAGAAGAAGACGGGGACCGTACCGGGCTGCGAGTCTACACTGGG
GCACAAGCCATGGTCCGATTCCTGTACCGCTTCCCATGGCTGATAAAAGG
ACAGCGTGTGGTGGAACTGGGATGTGGGGTGGGCGCCGTGGGACTGTTAG
CGTCCCGATTGGGGCCGACGTGCGTAGTGCTGACGGACGGAAGTGTAGAA
ACGCTGGAACTGACGCAAAGGAACGTGGCTACCTTTCAAGCTTTACCCTC
GTTGTCCCCCGGGTTTTCTCCATCTTCGCACGGAAGTACTTCAGCTGTCG
CCTCCCTTCCCTCCCTTGCTGTGCACAAGCTGCAGTGGGACTCGCACGCT
GCCATCGTTGATTTGTTACACGCGCAAAAAGTGGACAAATTTGATGTTGT
GATAGGCACGGACCTCATGTACTATAACGTAGATGCCTCGGTGGTATTGA
CGGCCGCGACTTGCTTGCTGGATGGGAGGGTAAAAAAAAGAGAAAAAGAA
GGGGGAGGAGGTGGAGGAGGACGAAAGGTGGGAGAAGAGAGCGAACCCCC
ATACAAAGTGAACAAAGATGAGCGAGAAGGGTGTACTAACAGCGGACTTG
CGTTCGGCAAGAGGAGAAGTGAGAGCGAGGGTAAGGGTGGCATCATCCTC
CTCGCGCATATATTCCGCGGAGCCCATCTTCCTTACACACTCTTGGCGGC
CGCAGAGTCCCTGGGATGGGCCTTGTTGGAGGTGCCGATGGAGGAGGTCG
TCTCGGAGGAAGGGGAGGGAGGGGGGGAGGGAAAAGTACCCGGAACAACG
CCGGAGTGGTGGGGGAGCATGTGTGTGTTGGTGGGGGTGAGGGATGGAGG
GAGGGAGGAAGGGAAGGAAGAAATGCTTGCGCGTTTGCCGCAGGGGAGTC
GGGTTTTTGTGCCATATTGGAAGGAGGGAGGGGAGGGAGGGGGGGAAGAA
GACGAGGAGTTGTGGTCCTGGCAGTTACCACGTGCAATAAACTAG
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Synonyms
Publications