jgi.p|Nanoce1779_2|244967, mRNA_555 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|244967
Unique NamemRNA_555
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1220
Alignment locationscaffold_3:1348109..1349589 -

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Properties
Property NameValue
TranscriptId245053
TrackFilteredModels2
ProteinId244967
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1348109..1349589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|244967gene_555Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|244967mRNA_555-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_555CDS_555Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_555 ID=mRNA_555|Name=jgi.p|Nanoce1779_2|244967|organism=Nannochloropsis oceanica|type=mRNA|length=1220bp
TAGCTATCACATAGCTTATTTGGTTATTTAATTTTGATAATTTGACCACT
CAAAACACACAGACACAATATAATGGCGGTTCAATAAGAGCAGCAATAAC
TCCACGTCCTAGCTATGGCCGAGGCGGAAGAAGCGGCATTTGCAACCGAG
CATGCTCGGCTCGTGCGTCTGCTCCACAACCAAGGCAAGGAGGACGTCGG
AGACCTCCGGAAAACCTCCACGACCACGGCTAGAACGACCACCAGCAATA
GCAGTAGCAGCAGCAGCAGCAGCTCTATCCCACGCTACATTCGTCTTCGT
CGCCCTCGGCCCGTGGCGAGTAAGGAGGAAGAGGAAGAGGAGGAGCAGGC
CACGCGAAAGGCGATCGTTGCGGCGGGAGGTCACGTAGTCGTGTGGTGCC
CAGCAGAGGATAGGGAGGGCTTCTATGCCTTACCTACAGCCTTTCGTTTG
GCGCAATGGCCGCTATACCAGCAAGGGCGGGTTTATGGGATGGATGTGGC
GTCAGGGGTCGCGGTATGGGCATTGGGTCCGCGACCGGGAGAGGACGTGT
TGGATTTGTGTTGTTGCCCGGGCCTGAAATTATGCATGCTGGCAGAGCGA
ATGAAGCACAAGGGGACAGTCACAGGCGTAGACATCTCTCGAACCCGCCT
CCATGTCTGCCGCCAAGTCCTCCTTAAGTACCATATCGGCCGGCATACCT
CCCATTCTCTTGCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTTCTCCTCAGCCTCCTCCACCTTCTCATCCTCCTG
CTCCACTTCCTCCTCCCCCCCTTCCCCCCTGACCTCCTCCTTGTGGTGTC
GGTTGCTATGCGCGGACGGCTGCACCTTCCAGCACGGCCCCCAGCAGGCG
TGGACCGGATTGGAGGAAGACGTGATTTTTGACTCGAGGGCTTATGACTG
GACGGTGAGTCAGAAATGGAAGGAAGAAGGGAAGGAGGGAGGAAGGGATA
AGGGAATATGGGAATGGTCGGTTTAAGGCCTATGTGGTGCTTCAGCTCCT
GGCCAGCCTCTTGAGGCTTTCCCCTGCATCAACGCTATTCGCATGAAATA
CACCCTTCCTTTCTAACCCCCTCCTCTTGTAAACGCAGGGCATGGAAGCC
CTGCGTGCCCTCCTCCAGCTTTTTACTCCACAGGAGAGGGAGGGTGAGAA
GAAAGGGGAGCTGTATGACA
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protein sequence of jgi.p|Nanoce1779_2|244967

>mRNA_555-protein ID=mRNA_555-protein|Name=jgi.p|Nanoce1779_2|244967|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MAEAEEAAFATEHARLVRLLHNQGKEDVGDLRKTSTTTARTTTSNSSSSS
SSSSIPRYIRLRRPRPVASKEEEEEEEQATRKAIVAAGGHVVVWCPAEDR
EGFYALPTAFRLAQWPLYQQGRVYGMDVASGVAVWALGPRPGEDVLDLCC
CPGLKLCMLAERMKHKGTVTGVDISRTRLHVCRQVLLKYHIGRHTSHSLA
PSSSSSSSSSSSSSSSSFSSASSTFSSSCSTSSSPPSPLTSSLWCRLLCA
DGCTFQHGPQQAWTGLEEDVIFDSRAYDWTVSQKWKEEGKEGGRDKGIWE
WSV*
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mRNA from alignment at scaffold_3:1348109..1349589-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_555 ID=mRNA_555|Name=jgi.p|Nanoce1779_2|244967|organism=Nannochloropsis oceanica|type=mRNA|length=1481bp|location=Sequence derived from alignment at scaffold_3:1348109..1349589- (Nannochloropsis oceanica)
TAGCTATCACATAGCTTATTTGGTTATTTAATTTTGATAATTTGACCACT
CAAAACACACAGACACAATATAATGGCGGTTCAATAAGAGCAGCAATAAC
TCCACGTCCTAGCTATGGCCGAGGCGGAAGAAGCGGCATTTGCAACCGAG
CATGCTCGGCTCGTGCGTCTGCTCCACAACCAAGGCAAGGAGGACGTCGG
AGACCTCCGGAAAACCTCCACGACCACGGCTAGAACGACCACCAGCAATA
GCAGTAGCAGCAGCAGCAGCAGCTCTATCCCACGCTACATTCGTCTTCGT
CGCCCTCGGCCCGTGGCGAGTAAGGAGGAAGAGGAAGAGGAGGAGCAGGC
CACGCGAAAGGCGATCGTTGCGGCGGGAGGTCACGTAGTCGTGTGGTGCC
CAGCAGAGGATAGGGAGGGCTTCTATGCCTTACCTACAGCCTTTCGTTTG
GCGCAATGGCCGCTATACCAGCAAGGGCGGGTTTATGGGATGGATGTGGC
GTCAGGGGTCGCGGTATGGGCATTGGGTCCGCGACCGGGAGAGGACGTGT
TGGATTTGTGTTGTTGCCCGGGCCTGAAATTATGCATGCTGGCAGAGCGA
ATGAAGCACAAGGGGACAGTCACAGGTGAGTTGATGAAGTAAAAAGAATG
TGGGAGACGATTGAAACGTAATATAATTTGGGGGTGGGACTAGAATACAT
GCCGCCCTACAGCCCCCCTCCTTTCTTCCCACCCATTTGCCACGCACATA
CGCATGCTGCCGCAATTCTCCTCCCTCATCCTCCTTCTCCTTCTATTATT
CCTCCTTTCCTTTCTTTTCTTTCCCCACCGTCCAGGCGTAGACATCTCTC
GAACCCGCCTCCATGTCTGCCGCCAAGTCCTCCTTAAGTACCATATCGGC
CGGCATACCTCCCATTCTCTTGCCCCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCAGCCTCCTCCACCTTCT
CATCCTCCTGCTCCACTTCCTCCTCCCCCCCTTCCCCCCTGACCTCCTCC
TTGTGGTGTCGGTTGCTATGCGCGGACGGCTGCACCTTCCAGCACGGCCC
CCAGCAGGCGTGGACCGGATTGGAGGAAGACGTGATTTTTGACTCGAGGG
CTTATGACTGGACGGTGAGTCAGAAATGGAAGGAAGAAGGGAAGGAGGGA
GGAAGGGATAAGGGAATATGGGAATGGTCGGTTTAAGGCCTATGTGGTGC
TTCAGCTCCTGGCCAGCCTCTTGAGGCTTTCCCCTGCATCAACGCTATTC
GCATGAAATACACCCTTCCTTTCTAACCCCCTCCTCTTGTAAACGCAGGG
CATGGAAGCCCGTGGCCAGAAGCGCATGAACCGAGGGACTCGCCGAAAGG
AATTACTCGCCCTGCGTGCCCTCCTCCAGCTTTTTACTCCACAGGAGAGG
GAGGGTGAGAAGAAAGGGGAGCTGTATGACA
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Coding sequence (CDS) from alignment at scaffold_3:1348109..1349589-

>mRNA_555 ID=mRNA_555|Name=jgi.p|Nanoce1779_2|244967|organism=Nannochloropsis oceanica|type=CDS|length=1824bp|location=Sequence derived from alignment at scaffold_3:1348109..1349589- (Nannochloropsis oceanica)
GCGTAGACATCTCTCGAACCCGCCTCCATGTCTGCCGCCAAGTCCTCCTT
AAGTACCATATCGGCCGGCATACCTCCCATTCTCTTGCCCCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCAG
CCTCCTCCACCTTCTCATCCTCCTGCTCCACTTCCTCCTCCCCCCCTTCC
CCCCTGACCTCCTCCTTGTGGTGTCGGTTGCTATGCGCGGACGGCTGCAC
CTTCCAGCACGGCCCCCAGCAGGCGTGGACCGGATTGGAGGAAGACGTGA
TTTTTGACTCGAGGGCTTATGACTGGACGGTGAGTCAGAAATGGAAGGAA
GAAGGGAAGGAGGGAGGAAGGGATAAGGGAATATGGGAATGGTCGGTTTA
AATGGCCGAGGCGGAAGAAGCGGCATTTGCAACCGAGCATGCTCGGCTCG
TGCGTCTGCTCCACAACCAAGGCAAGGAGGACGTCGGAGACCTCCGGAAA
ACCTCCACGACCACGGCTAGAACGACCACCAGCAATAGCAGTAGCAGCAG
CAGCAGCAGCTCTATCCCACGCTACATTCGTCTTCGTCGCCCTCGGCCCG
TGGCGAGTAAGGAGGAAGAGGAAGAGGAGGAGCAGGCCACGCGAAAGGCG
ATCGTTGCGGCGGGAGGTCACGTAGTCGTGTGGTGCCCAGCAGAGGATAG
GGAGGGCTTCTATGCCTTACCTACAGCCTTTCGTTTGGCGCAATGGCCGC
TATACCAGCAAGGGCGGGTTTATGGGATGGATGTGGCGTCAGGGGTCGCG
GTATGGGCATTGGGTCCGCGACCGGGAGAGGACGTGTTGGATTTGTGTTG
TTGCCCGGGCCTGAAATTATGCATGCTGGCAGAGCGAATGAAGCACAAGG
GGACAGTCACAGGCGTAGACATCTCTCGAACCCGCCTCCATGTCTGCCGC
CAAGTCCTCCTTAAGTACCATATCGGCCGGCATACCTCCCATTCTCTTGC
CCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTTCTCCTCAGCCTCCTCCACCTTCTCATCCTCCTGCTCCACTTCCTCC
TCCCCCCCTTCCCCCCTGACCTCCTCCTTGTGGTGTCGGTTGCTATGCGC
GGACGGCTGCACCTTCCAGCACGGCCCCCAGCAGGCGTGGACCGGATTGG
AGGAAGACGTGATTTTTGACTCGAGGGCTTATGACTGGACGGTGAGTCAG
AAATGGAAGGAAGAAGGGAAGGAGGGAGGAAGGGATAAGGGAATATGGGA
ATGGTCGGTTTAAATGGCCGAGGCGGAAGAAGCGGCATTTGCAACCGAGC
ATGCTCGGCTCGTGCGTCTGCTCCACAACCAAGGCAAGGAGGACGTCGGA
GACCTCCGGAAAACCTCCACGACCACGGCTAGAACGACCACCAGCAATAG
CAGTAGCAGCAGCAGCAGCAGCTCTATCCCACGCTACATTCGTCTTCGTC
GCCCTCGGCCCGTGGCGAGTAAGGAGGAAGAGGAAGAGGAGGAGCAGGCC
ACGCGAAAGGCGATCGTTGCGGCGGGAGGTCACGTAGTCGTGTGGTGCCC
AGCAGAGGATAGGGAGGGCTTCTATGCCTTACCTACAGCCTTTCGTTTGG
CGCAATGGCCGCTATACCAGCAAGGGCGGGTTTATGGGATGGATGTGGCG
TCAGGGGTCGCGGTATGGGCATTGGGTCCGCGACCGGGAGAGGACGTGTT
GGATTTGTGTTGTTGCCCGGGCCTGAAATTATGCATGCTGGCAGAGCGAA
TGAAGCACAAGGGGACAGTCACAG
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Synonyms
Publications