jgi.p|Nanoce1779_2|592911, mRNA_5548 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592911
Unique NamemRNA_5548
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length681
Alignment locationscaffold_13:697692..698372 +

Link to JBrowse

Properties
Property NameValue
TranscriptId592997
TrackFilteredModels2
ProteinId592911
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:697692..698372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592911gene_5548Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592911mRNA_5548-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5548CDS_5548Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5548 ID=mRNA_5548|Name=jgi.p|Nanoce1779_2|592911|organism=Nannochloropsis oceanica|type=mRNA|length=681bp
AGGTCAGAAACGCAAAATGTTGCGCAGTACCGTTGCCAGCCTCCGCTGCC
TCCCCACCGTCTCCTCCTCCCTCCCGGCCATCGCCTCCGTCCTTCTCTCC
TCCTCCCTTACCCACACCAGTCTGACCGCCTGTAGCAGCAATACAAGTAC
AAGGAGAAGACAGCGGCAACTTCACTTCGCCTACCACAGCACGGCGCTGT
GCCCGAAAGATATCAAGATGACCTGGCATGTGGCCGGCGAGGAAATCCCT
GTGACGGCCGCAGAAGGAAAGAGCCTGTTGGAGGTCGCGCATGAAAACGA
CATTGAATTAGAGGGGGCCTGTGGAGGAGAGCTAGCTTGCTCGACCTGTC
ACGTGGTGTTCACCCCGGAGCTGTATGGGAAATTGCCGGAGAAGAAGGAG
GAGGAGGAAGACATGCTGGACTTGGCGTGGGGATTGACGGACACGTCGCG
GTTGGGGTGTCAGATTAAAGTGAGCCCCGTGCTGGAGAACGCCGTGATTA
CCATTCCTGAGGAGACGAATAATATGCTGGGGGGCGAGGAAGGGGAAACC
GCGAAGCCGGCAGGGGCTCCGGTGGACCCCTGGGCCAAGTGAGGAGGAAG
GAGAGAGGGAGGAGGGGAGGCAAGTGGTGGAAAGAAATGGAGTAGGGTGA
GGACAAGAAATCAAAGTACCGTCGTTTTAAA
back to top

protein sequence of jgi.p|Nanoce1779_2|592911

>mRNA_5548-protein ID=mRNA_5548-protein|Name=jgi.p|Nanoce1779_2|592911|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MLRSTVASLRCLPTVSSSLPAIASVLLSSSLTHTSLTACSSNTSTRRRQR
QLHFAYHSTALCPKDIKMTWHVAGEEIPVTAAEGKSLLEVAHENDIELEG
ACGGELACSTCHVVFTPELYGKLPEKKEEEEDMLDLAWGLTDTSRLGCQI
KVSPVLENAVITIPEETNNMLGGEEGETAKPAGAPVDPWAK*
back to top

mRNA from alignment at scaffold_13:697692..698372+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5548 ID=mRNA_5548|Name=jgi.p|Nanoce1779_2|592911|organism=Nannochloropsis oceanica|type=mRNA|length=681bp|location=Sequence derived from alignment at scaffold_13:697692..698372+ (Nannochloropsis oceanica)
AGGTCAGAAACGCAAAATGTTGCGCAGTACCGTTGCCAGCCTCCGCTGCC TCCCCACCGTCTCCTCCTCCCTCCCGGCCATCGCCTCCGTCCTTCTCTCC TCCTCCCTTACCCACACCAGTCTGACCGCCTGTAGCAGCAATACAAGTAC AAGGAGAAGACAGCGGCAACTTCACTTCGCCTACCACAGCACGGCGCTGT GCCCGAAAGATATCAAGATGACCTGGCATGTGGCCGGCGAGGAAATCCCT GTGACGGCCGCAGAAGGAAAGAGCCTGTTGGAGGTCGCGCATGAAAACGA CATTGAATTAGAGGGGGCCTGTGGAGGAGAGCTAGCTTGCTCGACCTGTC ACGTGGTGTTCACCCCGGAGCTGTATGGGAAATTGCCGGAGAAGAAGGAG GAGGAGGAAGACATGCTGGACTTGGCGTGGGGATTGACGGACACGTCGCG GTTGGGGTGTCAGATTAAAGTGAGCCCCGTGCTGGAGAACGCCGTGATTA CCATTCCTGAGGAGACGAATAATATGCTGGGGGGCGAGGAAGGGGAAACC GCGAAGCCGGCAGGGGCTCCGGTGGACCCCTGGGCCAAGTGAGGAGGAAG GAGAGAGGGAGGAGGGGAGGCAAGTGGTGGAAAGAAATGGAGTAGGGTGA GGACAAGAAATCAAAGTACCGTCGTTTTAAA
back to top

Coding sequence (CDS) from alignment at scaffold_13:697692..698372+

>mRNA_5548 ID=mRNA_5548|Name=jgi.p|Nanoce1779_2|592911|organism=Nannochloropsis oceanica|type=CDS|length=576bp|location=Sequence derived from alignment at scaffold_13:697692..698372+ (Nannochloropsis oceanica)
ATGTTGCGCAGTACCGTTGCCAGCCTCCGCTGCCTCCCCACCGTCTCCTC
CTCCCTCCCGGCCATCGCCTCCGTCCTTCTCTCCTCCTCCCTTACCCACA
CCAGTCTGACCGCCTGTAGCAGCAATACAAGTACAAGGAGAAGACAGCGG
CAACTTCACTTCGCCTACCACAGCACGGCGCTGTGCCCGAAAGATATCAA
GATGACCTGGCATGTGGCCGGCGAGGAAATCCCTGTGACGGCCGCAGAAG
GAAAGAGCCTGTTGGAGGTCGCGCATGAAAACGACATTGAATTAGAGGGG
GCCTGTGGAGGAGAGCTAGCTTGCTCGACCTGTCACGTGGTGTTCACCCC
GGAGCTGTATGGGAAATTGCCGGAGAAGAAGGAGGAGGAGGAAGACATGC
TGGACTTGGCGTGGGGATTGACGGACACGTCGCGGTTGGGGTGTCAGATT
AAAGTGAGCCCCGTGCTGGAGAACGCCGTGATTACCATTCCTGAGGAGAC
GAATAATATGCTGGGGGGCGAGGAAGGGGAAACCGCGAAGCCGGCAGGGG
CTCCGGTGGACCCCTGGGCCAAGTGA
back to top
Synonyms
Publications