jgi.p|Nanoce1779_2|592901, mRNA_5546 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592901
Unique Name	mRNA_5546
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1260
Alignment location	scaffold_13:688220..689479 +

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Properties


Property Name	Value
TranscriptId	592987
Track	FilteredModels2
ProteinId	592901

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:688220..689479 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592901	gene_5546	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592901	mRNA_5546-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5546	CDS_5546	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:688220..689479+
coding sequence from alignment at scaffold_13:688220..689479+

mRNA sequence

>mRNA_5546 ID=mRNA_5546|Name=jgi.p|Nanoce1779_2|592901|organism=Nannochloropsis oceanica|type=mRNA|length=1260bp
CATCTTCCTACAACGGGCCCATCCGCAGGCCCGCATGCATACCCAGAACG
CATAGACAAAGGCACCTTTAAGTTACTGGGTGCATGGCGAAATGCTTTGG
TAATGATAAGAAGATGATTGATTTGTCAGGTATGAGAATCACGCTCTCTG
TGTCGAAAGCAGACCAACCCACCCTGCTCAAAAGTTGTCCAATCCGAGAA
ATTTTGGTCATCTAGAGGTGTGAGAGGTGTCCCTACATTTGTGGGGAAAG
TTCTTAAAAGCTTGTGATAAACATGTGGATGACACTCTTACAATAGAAAA
TCGTACGCACTCGTGTAAAATGCTGTTTGTGGTCACACTTGATGTGACTT
GACTTGTTACTTTGGAACGCACCCTCCGGAAGGGATTTAAAATGGCGCAT
GCTGAAGCAGGCATCATTTACACCGTGCCGTACAGAGCACCACACCCTCA
TGGGCAGCGCACTCATGTCTCATGTATTGGGACCATCTCAGGGCTTGTGT
GGCATAGCCATAGGCACACGTATGCCCGTCCTCCGTACTAAGTTTTAGGA
GAAAATCGATATGTTCCGATACGTCTCAGCCTCATACCTCTAAGTACGGT
CAAGATCCCGCTCATGCTTCTAATTAATGCTTCCATTCGCCCTGTAAATA
AAAAATATGCATTTGGTCAATTTGTGCTATTTTGCTATTGCGGTTGCCCT
TCTCTTTCGCCGTCTCTGCACCTCTCATTGCGTGGTGGTGGCCTTGGGAG
GCGTTGGCTTTCGTGAGCTCTCAGGCCTTTGTTGTCGACGTGAAACTTCT
TACAAAAGGCTTGCAGAAAGCGCGTCCTGTTTCTTGTACTCATCCACTAT
TGCTGCTGCTGCTCGTTTTCTCGAGAGGGTACTTTGGTAATTTTCTTTCC
TCTCTTTCTCTCTTCCTCTCTCCCTCTCCCTCTCTGTCGTTAAGCCAAGG
CTACAATTTTACCTATCAGTTTTCTCCCCGCACTGCCCCTATCCACACCT
TCCTCAGGAGCCCCTACTCTCTATCTTTCTTCCCATATTTATCTGACCCC
TTTGGCTTTTTCCCTCCTAACTACTCCTCGCGCGCGCGCCCCCCTCTCTA
CTCCTCCAACCCTGCCAAAGCTTCCAAATCAATCGCCGTCCTCGAGTTCA
ATCCCTTGTGTCCAAAACAACACTCAAAGAACGTCAGCCCGAAAAATGCC
ACAACTCCCACCGCCGCCAGGCCCGTCAAAGCCAACATAGGTACCTCATA
CTCAAACCCC

protein sequence of jgi.p|Nanoce1779_2|592901

>mRNA_5546-protein ID=mRNA_5546-protein|Name=jgi.p|Nanoce1779_2|592901|organism=Nannochloropsis oceanica|type=polypeptide|length=78bp
MHLVNLCYFAIAVALLFRRLCTSHCVVVALGGVGFRELSGLCCRRETSYK
RLAESASCFLYSSTIAAAARFLERVLW*

mRNA from alignment at scaffold_13:688220..689479+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5546 ID=mRNA_5546|Name=jgi.p|Nanoce1779_2|592901|organism=Nannochloropsis oceanica|type=mRNA|length=1260bp|location=Sequence derived from alignment at scaffold_13:688220..689479+ (Nannochloropsis oceanica)
CATCTTCCTACAACGGGCCCATCCGCAGGCCCGCATGCATACCCAGAACG
CATAGACAAAGGCACCTTTAAGTTACTGGGTGCATGGCGAAATGCTTTGG
TAATGATAAGAAGATGATTGATTTGTCAGGTATGAGAATCACGCTCTCTG
TGTCGAAAGCAGACCAACCCACCCTGCTCAAAAGTTGTCCAATCCGAGAA
ATTTTGGTCATCTAGAGGTGTGAGAGGTGTCCCTACATTTGTGGGGAAAG
TTCTTAAAAGCTTGTGATAAACATGTGGATGACACTCTTACAATAGAAAA
TCGTACGCACTCGTGTAAAATGCTGTTTGTGGTCACACTTGATGTGACTT
GACTTGTTACTTTGGAACGCACCCTCCGGAAGGGATTTAAAATGGCGCAT
GCTGAAGCAGGCATCATTTACACCGTGCCGTACAGAGCACCACACCCTCA
TGGGCAGCGCACTCATGTCTCATGTATTGGGACCATCTCAGGGCTTGTGT
GGCATAGCCATAGGCACACGTATGCCCGTCCTCCGTACTAAGTTTTAGGA
GAAAATCGATATGTTCCGATACGTCTCAGCCTCATACCTCTAAGTACGGT
CAAGATCCCGCTCATGCTTCTAATTAATGCTTCCATTCGCCCTGTAAATA
AAAAATATGCATTTGGTCAATTTGTGCTATTTTGCTATTGCGGTTGCCCT
TCTCTTTCGCCGTCTCTGCACCTCTCATTGCGTGGTGGTGGCCTTGGGAG
GCGTTGGCTTTCGTGAGCTCTCAGGCCTTTGTTGTCGACGTGAAACTTCT
TACAAAAGGCTTGCAGAAAGCGCGTCCTGTTTCTTGTACTCATCCACTAT
TGCTGCTGCTGCTCGTTTTCTCGAGAGGGTACTTTGGTAATTTTCTTTCC
TCTCTTTCTCTCTTCCTCTCTCCCTCTCCCTCTCTGTCGTTAAGCCAAGG
CTACAATTTTACCTATCAGTTTTCTCCCCGCACTGCCCCTATCCACACCT
TCCTCAGGAGCCCCTACTCTCTATCTTTCTTCCCATATTTATCTGACCCC
TTTGGCTTTTTCCCTCCTAACTACTCCTCGCGCGCGCGCCCCCCTCTCTA
CTCCTCCAACCCTGCCAAAGCTTCCAAATCAATCGCCGTCCTCGAGTTCA
ATCCCTTGTGTCCAAAACAACACTCAAAGAACGTCAGCCCGAAAAATGCC
ACAACTCCCACCGCCGCCAGGCCCGTCAAAGCCAACATAGGTACCTCATA
CTCAAACCCC

Coding sequence (CDS) from alignment at scaffold_13:688220..689479+

>mRNA_5546 ID=mRNA_5546|Name=jgi.p|Nanoce1779_2|592901|organism=Nannochloropsis oceanica|type=CDS|length=234bp|location=Sequence derived from alignment at scaffold_13:688220..689479+ (Nannochloropsis oceanica)
ATGCATTTGGTCAATTTGTGCTATTTTGCTATTGCGGTTGCCCTTCTCTT
TCGCCGTCTCTGCACCTCTCATTGCGTGGTGGTGGCCTTGGGAGGCGTTG
GCTTTCGTGAGCTCTCAGGCCTTTGTTGTCGACGTGAAACTTCTTACAAA
AGGCTTGCAGAAAGCGCGTCCTGTTTCTTGTACTCATCCACTATTGCTGC
TGCTGCTCGTTTTCTCGAGAGGGTACTTTGGTAA

Synonyms

Publications