jgi.p|Nanoce1779_2|631140, mRNA_5545 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|631140
Unique NamemRNA_5545
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length570
Alignment locationscaffold_13:687385..688089 -

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Properties
Property NameValue
TranscriptId631226
TrackFilteredModels2
ProteinId631140
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:687385..688089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631140gene_5545Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631140mRNA_5545-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5545CDS_5545Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5545 ID=mRNA_5545|Name=jgi.p|Nanoce1779_2|631140|organism=Nannochloropsis oceanica|type=mRNA|length=570bp
ATGGCTGAAGAGGTCGTGATGGCTTTTCCGCTACCAAATGCCGACACGGC
TATCTTTAGAGTAGGTGTCTCGCTACTTTACCTGCAACTTACCATCTCAG
ACTCGCGGCATACACCCCTGAAACTCATCATCGTGCTGTCGTATTCACAC
CCTCCAGTCATTATGACGCCATTCGTCCGAACTAAATTAGCCCCGTCCCC
TGCCTGCCCTAGCATCACCGCCATCACCACGGCGGGGCACTGGGACCATC
CGATTCATAAAGCCGCCCTCCACAACAACTTGGAGGCGGTCGAAAGCCTG
TTGACCCTTAATCCCGCCCTCTTGGAAACTCCCGGCTTCAATGGTATTTT
GCCTGTTCAATGTGCGGCGCGGCGAGGCCACCTCGAACTGCTCCGCTATT
TCCTTTCTCAAGGTGCCCAACCCTGCGGCCGAGATCGCGGACATTGGTCC
TTGCTTCATCACGCCGCAGCGGGGGGGCATGAAGCGTGCCTCCTCTTCCT
CCTCACCACACCCCTCCTCCCCCAAGCCCCTCATTTCTTGGAGATTGATT
CCATGGCTCGCGACGGGAGC
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protein sequence of jgi.p|Nanoce1779_2|631140

>mRNA_5545-protein ID=mRNA_5545-protein|Name=jgi.p|Nanoce1779_2|631140|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MAEEVVMAFPLPNADTAIFRVGVSLLYLQLTISDSRHTPLKLIIVLSYSH
PPVIMTPFVRTKLAPSPACPSITAITTAGHWDHPIHKAALHNNLEAVESL
LTLNPALLETPGFNGILPVQCAARRGHLELLRYFLSQGAQPCGRDRGHWS
LLHHAAAGGHEACLLFLLTTPLLPQAPHFLEIDSMARDGS
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mRNA from alignment at scaffold_13:687385..688089-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5545 ID=mRNA_5545|Name=jgi.p|Nanoce1779_2|631140|organism=Nannochloropsis oceanica|type=mRNA|length=705bp|location=Sequence derived from alignment at scaffold_13:687385..688089- (Nannochloropsis oceanica)
ATGGCTGAAGAGGTCGTGATGGCTTTTCCGCTACCAAATGCCGACACGGC
TATCTTTAGAGTAGGTGTCTCGCTACTTTACCTGCAACTTACCATCTCAG
ACTCGCGGCATACACCCCTGAAACTCATCATCGTGCTGTCGTATTCACAC
CCTCCAGTCATTATGACGCCATTCGTCCGAACTAAATTAGCCCCGTCCCC
TGCCTGCCCTAGCATCACCGCCATCACCACGGCGGGGCACTGGGACCATC
CGATTCATAAAGCCGCCCTCCACAACAACTTGGAGGCGGTCGAAAGCCTG
TTGACCCTTAATCCCGCCCTCTTGGAAACTCCCGGCTTCAATGGTATTTT
GCCTGTTCAATGTGCGGCGCGGCGAGGCCACCTCGAACTGCTCCGGTACG
TTTGGTTGGCTTAAGGGGAGCGAGATGAGGTCGAAGTATGTGTCTACTGA
GATATGAGACCAATAATTTTTAAGATGTGCGGTGACGTTGACAATCTCTG
ATATCTTCCACCTACCTCAATCCCACTCAGCTATTTCCTTTCTCAAGGTG
CCCAACCCTGCGGCCGAGATCGCGGACATTGGTCCTTGCTTCATCACGCC
GCAGCGGGGGGGCATGAAGCGTGCCTCCTCTTCCTCCTCACCACACCCCT
CCTCCCCCAAGCCCCTCATTTCTTGGAGATTGATTCCATGGCTCGCGACG
GGAGC
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Coding sequence (CDS) from alignment at scaffold_13:687385..688089-

>mRNA_5545 ID=mRNA_5545|Name=jgi.p|Nanoce1779_2|631140|organism=Nannochloropsis oceanica|type=CDS|length=1140bp|location=Sequence derived from alignment at scaffold_13:687385..688089- (Nannochloropsis oceanica)
CTATTTCCTTTCTCAAGGTGCCCAACCCTGCGGCCGAGATCGCGGACATT
GGTCCTTGCTTCATCACGCCGCAGCGGGGGGGCATGAAGCGTGCCTCCTC
TTCCTCCTCACCACACCCCTCCTCCCCCAAGCCCCTCATTTCTTGGAGAT
TGATTCCATGGCTCGCGACGGGAGCATGGCTGAAGAGGTCGTGATGGCTT
TTCCGCTACCAAATGCCGACACGGCTATCTTTAGAGTAGGTGTCTCGCTA
CTTTACCTGCAACTTACCATCTCAGACTCGCGGCATACACCCCTGAAACT
CATCATCGTGCTGTCGTATTCACACCCTCCAGTCATTATGACGCCATTCG
TCCGAACTAAATTAGCCCCGTCCCCTGCCTGCCCTAGCATCACCGCCATC
ACCACGGCGGGGCACTGGGACCATCCGATTCATAAAGCCGCCCTCCACAA
CAACTTGGAGGCGGTCGAAAGCCTGTTGACCCTTAATCCCGCCCTCTTGG
AAACTCCCGGCTTCAATGGTATTTTGCCTGTTCAATGTGCGGCGCGGCGA
GGCCACCTCGAACTGCTCCGCTATTTCCTTTCTCAAGGTGCCCAACCCTG
CGGCCGAGATCGCGGACATTGGTCCTTGCTTCATCACGCCGCAGCGGGGG
GGCATGAAGCGTGCCTCCTCTTCCTCCTCACCACACCCCTCCTCCCCCAA
GCCCCTCATTTCTTGGAGATTGATTCCATGGCTCGCGACGGGAGCATGGC
TGAAGAGGTCGTGATGGCTTTTCCGCTACCAAATGCCGACACGGCTATCT
TTAGAGTAGGTGTCTCGCTACTTTACCTGCAACTTACCATCTCAGACTCG
CGGCATACACCCCTGAAACTCATCATCGTGCTGTCGTATTCACACCCTCC
AGTCATTATGACGCCATTCGTCCGAACTAAATTAGCCCCGTCCCCTGCCT
GCCCTAGCATCACCGCCATCACCACGGCGGGGCACTGGGACCATCCGATT
CATAAAGCCGCCCTCCACAACAACTTGGAGGCGGTCGAAAGCCTGTTGAC
CCTTAATCCCGCCCTCTTGGAAACTCCCGGCTTCAATGGTATTTTGCCTG
TTCAATGTGCGGCGCGGCGAGGCCACCTCGAACTGCTCCG
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Synonyms
Publications