jgi.p|Nanoce1779_2|592897, mRNA_5544 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592897
Unique NamemRNA_5544
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length636
Alignment locationscaffold_13:686371..687006 +

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Properties
Property NameValue
TranscriptId592983
TrackFilteredModels2
ProteinId592897
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:686371..687006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592897gene_5544Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592897mRNA_5544-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5544CDS_5544Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5544 ID=mRNA_5544|Name=jgi.p|Nanoce1779_2|592897|organism=Nannochloropsis oceanica|type=mRNA|length=636bp
CATGTTAGTGCTTTCTTTCCTTCACTTTCTCTTCATTTGTTATCATTATG
CGTTCTGCTCCATTTCGATATGTACGTTTGTGTCCTTTACCATGCACATT
TTTTTTTGGGTCAGTGTCTTAGTATATATCTCCATCTTCTTTTTGGGTGC
TCATGTTTCTCTAGCCCTAAGGCATTCAATTTTCGCTGATCCTTTCATAT
CGAACATAAAAGAGGTAGACCCTGCGTCCGTCGATATCCCTTCTCTTTAA
TATTCTCTAGGACCAGCTTTCCTCCCATTTCTTGCCCCCTTCCTTTGTCC
TTCCTACTCACAAATGATTTCATTTCATACATATAAATGCAAAATCACGA
ATTACCTCATCCGGCGTCCATATGAAAAAGAATCAATCCGTCGTGTCCCT
CCTGTACCGCTGCCTTTCCCTCCACATAATCCGTGGGTATTTTTAAGAAC
TCCCTCCCTCCTTCCTCCCCCGCTCCGTGCCTCCCTCCCCCACTTTGTGC
CTCCCTCTTCCCCTTCTTCAAACTCCCCAGACCCTCATTCTTAACCCGAC
GTGGTATCCAAGTAGCGCATCACCTCCCCAAATACGTCGTCACCAGTCTC
ATCCACCAACATCTGCACTACCCCCTTCTCCCTCCC
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protein sequence of jgi.p|Nanoce1779_2|592897

>mRNA_5544-protein ID=mRNA_5544-protein|Name=jgi.p|Nanoce1779_2|592897|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MLVLSFLHFLFICYHYAFCSISICTFVSFTMHIFFWVSVLVYISIFFLGA
HVSLALRHSIFADPFISNIKEVDPASVDIPSL*
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mRNA from alignment at scaffold_13:686371..687006+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5544 ID=mRNA_5544|Name=jgi.p|Nanoce1779_2|592897|organism=Nannochloropsis oceanica|type=mRNA|length=636bp|location=Sequence derived from alignment at scaffold_13:686371..687006+ (Nannochloropsis oceanica)
CATGTTAGTGCTTTCTTTCCTTCACTTTCTCTTCATTTGTTATCATTATG
CGTTCTGCTCCATTTCGATATGTACGTTTGTGTCCTTTACCATGCACATT
TTTTTTTGGGTCAGTGTCTTAGTATATATCTCCATCTTCTTTTTGGGTGC
TCATGTTTCTCTAGCCCTAAGGCATTCAATTTTCGCTGATCCTTTCATAT
CGAACATAAAAGAGGTAGACCCTGCGTCCGTCGATATCCCTTCTCTTTAA
TATTCTCTAGGACCAGCTTTCCTCCCATTTCTTGCCCCCTTCCTTTGTCC
TTCCTACTCACAAATGATTTCATTTCATACATATAAATGCAAAATCACGA
ATTACCTCATCCGGCGTCCATATGAAAAAGAATCAATCCGTCGTGTCCCT
CCTGTACCGCTGCCTTTCCCTCCACATAATCCGTGGGTATTTTTAAGAAC
TCCCTCCCTCCTTCCTCCCCCGCTCCGTGCCTCCCTCCCCCACTTTGTGC
CTCCCTCTTCCCCTTCTTCAAACTCCCCAGACCCTCATTCTTAACCCGAC
GTGGTATCCAAGTAGCGCATCACCTCCCCAAATACGTCGTCACCAGTCTC
ATCCACCAACATCTGCACTACCCCCTTCTCCCTCCC
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Coding sequence (CDS) from alignment at scaffold_13:686371..687006+

>mRNA_5544 ID=mRNA_5544|Name=jgi.p|Nanoce1779_2|592897|organism=Nannochloropsis oceanica|type=CDS|length=249bp|location=Sequence derived from alignment at scaffold_13:686371..687006+ (Nannochloropsis oceanica)
ATGTTAGTGCTTTCTTTCCTTCACTTTCTCTTCATTTGTTATCATTATGC
GTTCTGCTCCATTTCGATATGTACGTTTGTGTCCTTTACCATGCACATTT
TTTTTTGGGTCAGTGTCTTAGTATATATCTCCATCTTCTTTTTGGGTGCT
CATGTTTCTCTAGCCCTAAGGCATTCAATTTTCGCTGATCCTTTCATATC
GAACATAAAAGAGGTAGACCCTGCGTCCGTCGATATCCCTTCTCTTTAA
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Synonyms
Publications