jgi.p|Nanoce1779_2|592894, mRNA_5543 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592894
Unique NamemRNA_5543
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length559
Alignment locationscaffold_13:684815..685373 +

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Properties
Property NameValue
TranscriptId592980
TrackFilteredModels2
ProteinId592894
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:684815..685373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592894gene_5543Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592894mRNA_5543-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5543CDS_5543Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5543 ID=mRNA_5543|Name=jgi.p|Nanoce1779_2|592894|organism=Nannochloropsis oceanica|type=mRNA|length=559bp
CGGCGCTATCGAGGCGGGTAAAATCAACGGCTGGGCTTGATCGTTACTGC
CCCCAACGGCAGCAGCCGCAGCAGCAGCAGCAGCCTCACCGCCACCATGA
CAAGTCGATTGTCCCACCACTATCCCCTCTATCCCCTCCTTCATCTCCTC
CTCGCTTTCCTGCTCCCCTCTACCGGCTCCTCCCCCTTCCCCTCCCGCCG
CCTTGGCCAGTGCCTTCCTCAACCTACTGATTTCCCCTGCCTGCGCTTGA
ATGATCTTTTCCTTCCTCTCCAACTCCTCCCTCAATCCTGCATTCGTCCG
CTCCAGAACCTCGTACTTCCCCACCATGTTGTTCAACCACCGTTTCTTTC
GCTCCCTGCACTCCCGCTGGCGTTGCGCGTCTGTCTTGGGCTGGCCGCGA
GGCTCTTCGTTATGATACATCAAGATAGGCATCGGGCTCAGCGTCCCTCC
CCCTCTTCCTCCTTCTCCTCCCCCCTCCTCTTCCTCTTCTTCCTCCTCCT
CCCCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTGCGGGTGCCGG
TAGTCCCGG
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protein sequence of jgi.p|Nanoce1779_2|592894

>mRNA_5543-protein ID=mRNA_5543-protein|Name=jgi.p|Nanoce1779_2|592894|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MTSRLSHHYPLYPLLHLLLAFLLPSTGSSPFPSRRLGQCLPQPTDFPCLR
LNDLFLPLQLLPQSCIRPLQNLVLPHHVVQPPFLSLPALPLALRVCLGLA
ARLFVMIHQDRHRAQRPSPSSSFSSPLLFLFFLLLPLLPLLLLLLLLLRV
PV
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mRNA from alignment at scaffold_13:684815..685373+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5543 ID=mRNA_5543|Name=jgi.p|Nanoce1779_2|592894|organism=Nannochloropsis oceanica|type=mRNA|length=559bp|location=Sequence derived from alignment at scaffold_13:684815..685373+ (Nannochloropsis oceanica)
CGGCGCTATCGAGGCGGGTAAAATCAACGGCTGGGCTTGATCGTTACTGC
CCCCAACGGCAGCAGCCGCAGCAGCAGCAGCAGCCTCACCGCCACCATGA
CAAGTCGATTGTCCCACCACTATCCCCTCTATCCCCTCCTTCATCTCCTC
CTCGCTTTCCTGCTCCCCTCTACCGGCTCCTCCCCCTTCCCCTCCCGCCG
CCTTGGCCAGTGCCTTCCTCAACCTACTGATTTCCCCTGCCTGCGCTTGA
ATGATCTTTTCCTTCCTCTCCAACTCCTCCCTCAATCCTGCATTCGTCCG
CTCCAGAACCTCGTACTTCCCCACCATGTTGTTCAACCACCGTTTCTTTC
GCTCCCTGCACTCCCGCTGGCGTTGCGCGTCTGTCTTGGGCTGGCCGCGA
GGCTCTTCGTTATGATACATCAAGATAGGCATCGGGCTCAGCGTCCCTCC
CCCTCTTCCTCCTTCTCCTCCCCCCTCCTCTTCCTCTTCTTCCTCCTCCT
CCCCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTGCGGGTGCCGG
TAGTCCCGG
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Coding sequence (CDS) from alignment at scaffold_13:684815..685373+

>mRNA_5543 ID=mRNA_5543|Name=jgi.p|Nanoce1779_2|592894|organism=Nannochloropsis oceanica|type=CDS|length=457bp|location=Sequence derived from alignment at scaffold_13:684815..685373+ (Nannochloropsis oceanica)
ATGACAAGTCGATTGTCCCACCACTATCCCCTCTATCCCCTCCTTCATCT
CCTCCTCGCTTTCCTGCTCCCCTCTACCGGCTCCTCCCCCTTCCCCTCCC
GCCGCCTTGGCCAGTGCCTTCCTCAACCTACTGATTTCCCCTGCCTGCGC
TTGAATGATCTTTTCCTTCCTCTCCAACTCCTCCCTCAATCCTGCATTCG
TCCGCTCCAGAACCTCGTACTTCCCCACCATGTTGTTCAACCACCGTTTC
TTTCGCTCCCTGCACTCCCGCTGGCGTTGCGCGTCTGTCTTGGGCTGGCC
GCGAGGCTCTTCGTTATGATACATCAAGATAGGCATCGGGCTCAGCGTCC
CTCCCCCTCTTCCTCCTTCTCCTCCCCCCTCCTCTTCCTCTTCTTCCTCC
TCCTCCCCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTGCGGGTG
CCGGTAG
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Synonyms
Publications