jgi.p|Nanoce1779_2|592879, mRNA_5540 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592879
Unique NamemRNA_5540
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length822
Alignment locationscaffold_13:666018..666839 +

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Properties
Property NameValue
TranscriptId592965
TrackFilteredModels2
ProteinId592879
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:666018..666839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592879gene_5540Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592879mRNA_5540-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5540CDS_5540Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5540 ID=mRNA_5540|Name=jgi.p|Nanoce1779_2|592879|organism=Nannochloropsis oceanica|type=mRNA|length=822bp
TGCTGCTGCTGCTGTTGGTGGCGGTGATGATGTTCCACGGACGGATGAAG
CGCCGAGAGACTGTGACGGCCTGAGGTTGGGCGTATGCCCCCTCCCTCCA
ACCCCCCCTCCCCCACCACCTCCATGGGTGACAGCATGATAGGCGTGTGC
GTCCCTCCCACTTCTCCACCGCTGCCCTCTCCTCCACCGCCGCTCCTCCA
GACAGGGGGAGGACTGTGGGTAGGGGCGAAAGGGAGCAGGTCTCCGCTCT
TCTTCTTCGCCTTATGTCCTTTGGCGTGGGAGAAGGAGGAGGAACCGGTG
GTGGAGGAAGCAGCAATTGCGACGCCTGGAGACGAAGAGCTCGCCGCGCT
ATCGATGCTGAGGCGGGTGCCAAGCAGGAAGAAAGAAGACGAAAGCTTCT
CCCCTCCACCTTCCCCTCGGTCCGACAGCATCGACAGCCCACCCCAACTG
ATCATACTCTCCTGCTCCTCTTCCCCTCCTTCCCTCCTTGCCGCAACTGC
CGCCACTGCTGCCGCTACTTCTTCGGCTGCTGCCTCTTCTTCTTTCTCCT
CCTTTCCACTGGTACGCAGGGTTAATTTTATTTTTGGCGCGAGCAGTAAG
CCTCCCCCGGCATTGCCTAAGGTGAAGCTACTGCTCTCATCGAAGCCCGT
CCCTTGCTCCCTCCCTTCCTCGACTTCATCCTCTCCCGGGTATTGCTGCT
CGAGCACCAACGCATTTAAAGACATGACTACCCTCCCAACCTCCTCCCCC
TCCTCCTCCTCGCCTTCCACAACCTCCATATGCCCCTCGTCCTGCTCTGT
CTGCTGCTGATAATACTGCTGT
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protein sequence of jgi.p|Nanoce1779_2|592879

>mRNA_5540-protein ID=mRNA_5540-protein|Name=jgi.p|Nanoce1779_2|592879|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MPPPSNPPSPTTSMGDSMIGVCVPPTSPPLPSPPPPLLQTGGGLWVGAKG
SRSPLFFFALCPLAWEKEEEPVVEEAAIATPGDEELAALSMLRRVPSRKK
EDESFSPPPSPRSDSIDSPPQLIILSCSSSPPSLLAATAATAAATSSAAA
SSSFSSFPLVRRVNFIFGASSKPPPALPKVKLLLSSKPVPCSLPSSTSSS
PGYCCSSTNAFKDMTTLPTSSPSSSSPSTTSICPSSCSVCC*
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mRNA from alignment at scaffold_13:666018..666839+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5540 ID=mRNA_5540|Name=jgi.p|Nanoce1779_2|592879|organism=Nannochloropsis oceanica|type=mRNA|length=822bp|location=Sequence derived from alignment at scaffold_13:666018..666839+ (Nannochloropsis oceanica)
TGCTGCTGCTGCTGTTGGTGGCGGTGATGATGTTCCACGGACGGATGAAG
CGCCGAGAGACTGTGACGGCCTGAGGTTGGGCGTATGCCCCCTCCCTCCA
ACCCCCCCTCCCCCACCACCTCCATGGGTGACAGCATGATAGGCGTGTGC
GTCCCTCCCACTTCTCCACCGCTGCCCTCTCCTCCACCGCCGCTCCTCCA
GACAGGGGGAGGACTGTGGGTAGGGGCGAAAGGGAGCAGGTCTCCGCTCT
TCTTCTTCGCCTTATGTCCTTTGGCGTGGGAGAAGGAGGAGGAACCGGTG
GTGGAGGAAGCAGCAATTGCGACGCCTGGAGACGAAGAGCTCGCCGCGCT
ATCGATGCTGAGGCGGGTGCCAAGCAGGAAGAAAGAAGACGAAAGCTTCT
CCCCTCCACCTTCCCCTCGGTCCGACAGCATCGACAGCCCACCCCAACTG
ATCATACTCTCCTGCTCCTCTTCCCCTCCTTCCCTCCTTGCCGCAACTGC
CGCCACTGCTGCCGCTACTTCTTCGGCTGCTGCCTCTTCTTCTTTCTCCT
CCTTTCCACTGGTACGCAGGGTTAATTTTATTTTTGGCGCGAGCAGTAAG
CCTCCCCCGGCATTGCCTAAGGTGAAGCTACTGCTCTCATCGAAGCCCGT
CCCTTGCTCCCTCCCTTCCTCGACTTCATCCTCTCCCGGGTATTGCTGCT
CGAGCACCAACGCATTTAAAGACATGACTACCCTCCCAACCTCCTCCCCC
TCCTCCTCCTCGCCTTCCACAACCTCCATATGCCCCTCGTCCTGCTCTGT
CTGCTGCTGATAATACTGCTGT
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Coding sequence (CDS) from alignment at scaffold_13:666018..666839+

>mRNA_5540 ID=mRNA_5540|Name=jgi.p|Nanoce1779_2|592879|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_13:666018..666839+ (Nannochloropsis oceanica)
ATGCCCCCTCCCTCCAACCCCCCCTCCCCCACCACCTCCATGGGTGACAG
CATGATAGGCGTGTGCGTCCCTCCCACTTCTCCACCGCTGCCCTCTCCTC
CACCGCCGCTCCTCCAGACAGGGGGAGGACTGTGGGTAGGGGCGAAAGGG
AGCAGGTCTCCGCTCTTCTTCTTCGCCTTATGTCCTTTGGCGTGGGAGAA
GGAGGAGGAACCGGTGGTGGAGGAAGCAGCAATTGCGACGCCTGGAGACG
AAGAGCTCGCCGCGCTATCGATGCTGAGGCGGGTGCCAAGCAGGAAGAAA
GAAGACGAAAGCTTCTCCCCTCCACCTTCCCCTCGGTCCGACAGCATCGA
CAGCCCACCCCAACTGATCATACTCTCCTGCTCCTCTTCCCCTCCTTCCC
TCCTTGCCGCAACTGCCGCCACTGCTGCCGCTACTTCTTCGGCTGCTGCC
TCTTCTTCTTTCTCCTCCTTTCCACTGGTACGCAGGGTTAATTTTATTTT
TGGCGCGAGCAGTAAGCCTCCCCCGGCATTGCCTAAGGTGAAGCTACTGC
TCTCATCGAAGCCCGTCCCTTGCTCCCTCCCTTCCTCGACTTCATCCTCT
CCCGGGTATTGCTGCTCGAGCACCAACGCATTTAAAGACATGACTACCCT
CCCAACCTCCTCCCCCTCCTCCTCCTCGCCTTCCACAACCTCCATATGCC
CCTCGTCCTGCTCTGTCTGCTGCTGA
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Synonyms
Publications