jgi.p|Nanoce1779_2|551325, mRNA_554 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|551325
Unique NamemRNA_554
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1713
Alignment locationscaffold_3:1346667..1348687 -

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Properties
Property NameValue
TranscriptId551411
TrackFilteredModels2
ProteinId551325
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1346667..1348687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|551325gene_554Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|551325mRNA_554-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_554CDS_554Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_554 ID=mRNA_554|Name=jgi.p|Nanoce1779_2|551325|organism=Nannochloropsis oceanica|type=mRNA|length=1713bp
GCATACCTCCCATTCTCTTGCCCCCTCCTCCTCCTCCTCCTCCTCCTTCT
CCTCAGCCTCCTCCACCTTCTCATCCTCCTGCTCCACTTCCTCCTCCCCC
CCTTCCCCCCTGACCTCCTCCTTGTGGTGTCGGTTGCTATGCGCGGACGG
CTGCACCTTCCAGCACGGCCCCCAGCAGGCGTGGACCGGATTGGAGGAAG
ACGTGATTTTTGACTCGAGGGCTTATGACTGGACGGTGAGTCAGAAATGG
AAGGAAGAAGGGAAGGAGGGAGGAAGGGATAAGGGAATATGGGAATGGTC
GGTTTAAGGCCTATGTGGTGCTTCAGCTCCTGGCCAGCCTCTTGAGGCTT
TCCCCTGCATCAACGCTATTCGCATGAAATACACCCTTCCTTTCTAACCC
CCTCCTCTTGTAAACGCAGGGCATGGAAGCCCGTGGCCAGAAGCGCATGA
ACCGAGGGACTCGCCGAAAGGAATTACTCGCCCTGCGTGCCCTCCTCCAG
CTTTTTACTCCACAGGAGAGGGAGGGTGAGAAGAAAGGGGAGCTGTATGA
CAGAGTATTGGTGGATGCGGACTGCACGCACGATGGGTCGACGCGGCACA
TGGAAAAAGTGGCGGGCATGGATGAAGCCATCAAATCACGACATGGCGGG
TTCTTGTCCCGAGAAAAACTAGGAGGGCTCGAGGCCCTCCAACGAGGATT
GATATCTAATGGATTCCGTCTCTTGCGGCCTGGTGGTGTGTTGGTCTACA
GCACGTGCTCTTTATCTCCCCGACAGAACGAGGCCATCGTCACATACTTA
CTGAAAGCCGAAGCAGGGAAGGCAGGAGGGAAGGGGGTGGGGCCAGGGCG
GTTGCCGTGTCGATGGGGGAGCTTATCGGGCACATTGGTGTTTGAGCCAC
GCTTTGGGGAGACGAGTGGGTTGTTTATTGCACGGATTAGAAAAGAAGAG
GAAGAAGTAAGAATTAACTGATACTCTGACCCATTTATTAGACGAGTGGG
TTGTCTATAGCACGGATTAGAAAAGAAGAGGAAGAAGTAAGAACTAACTA
ATACACTGACGCATTTGTTAGTCGATTGACTGTCTGACTGAGAAAAAGGC
AAAGGAGGGCCGGAGCAAGACCAAGCTAAAGCGATGCGTGCATGTGGGTT
GGAGGGATGTTCTATTGTATGAAGAGTGTGAGTGCCGCAAACGAGCCCTC
GCAAAGTCAATGAAAACCGAAACATGCTTGTCACTTCCTCTGCGTGGCAT
CTTTGAATAGGGTTGCGATTTCCAAGTTGTCCGTCACATAAGACGACTCG
TCCATCTCACTAGTTGCAGTGTTCAACGGATCTAACTTCTGAGGCATCTG
GCGCCCATGCTTTGCCCTCTGATTTGGTGGCTGGATGAAGCTTTGAATGC
GCTTTGTGTGTCAAGGCATAACTTACACTCTCACTTTTCCTTTCCATTTT
TTTGCCAAGCCACATCGAGGAGGCCTGCTTGTTTCTCAGGCTGTCCTGTT
TGTGTTTTGGGGGGTTCCCGTGTGGACACTCGCTCCTCTTCATCGCCAAA
TCATATTTTCGACCTGTGCTCCCTGCACCATCCTCCGAAAACGCCACTTC
GACTGTCTTGAACGAGCAGTGTATCAGCTGCTAAGGCTGTAACCCGTGCT
AACTCTAATACAGGAGGAGCCACCGGACCTGTCTGCTGCCTCATTCACTC
GCTCATGTCCTCC
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protein sequence of jgi.p|Nanoce1779_2|551325

>mRNA_554-protein ID=mRNA_554-protein|Name=jgi.p|Nanoce1779_2|551325|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MEARGQKRMNRGTRRKELLALRALLQLFTPQEREGEKKGELYDRVLVDAD
CTHDGSTRHMEKVAGMDEAIKSRHGGFLSREKLGGLEALQRGLISNGFRL
LRPGGVLVYSTCSLSPRQNEAIVTYLLKAEAGKAGGKGVGPGRLPCRWGS
LSGTLVFEPRFGETSGLFIARIRKEEEEVRIN*
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mRNA from alignment at scaffold_3:1346667..1348687-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_554 ID=mRNA_554|Name=jgi.p|Nanoce1779_2|551325|organism=Nannochloropsis oceanica|type=mRNA|length=2021bp|location=Sequence derived from alignment at scaffold_3:1346667..1348687- (Nannochloropsis oceanica)
GCATACCTCCCATTCTCTTGCCCCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCAGCCTCCTCCACCTTCTCA
TCCTCCTGCTCCACTTCCTCCTCCCCCCCTTCCCCCCTGACCTCCTCCTT
GTGGTGTCGGTTGCTATGCGCGGACGGCTGCACCTTCCAGCACGGCCCCC
AGCAGGCGTGGACCGGATTGGAGGAAGACGTGATTTTTGACTCGAGGGCT
TATGACTGGACGGTGAGTCAGAAATGGAAGGAAGAAGGGAAGGAGGGAGG
AAGGGATAAGGGAATATGGGAATGGTCGGTTTAAGGCCTATGTGGTGCTT
CAGCTCCTGGCCAGCCTCTTGAGGCTTTCCCCTGCATCAACGCTATTCGC
ATGAAATACACCCTTCCTTTCTAACCCCCTCCTCTTGTAAACGCAGGGCA
TGGAAGCCCGTGGCCAGAAGCGCATGAACCGAGGGACTCGCCGAAAGGAA
TTACTCGCCCTGCGTGCCCTCCTCCAGCTTTTTACTCCACAGGAGAGGGA
GGGTGAGAAGAAAGGGGAGCTGTATGACAGAGTATTGGTGGATGCGGACT
GCACGCACGATGGGTCGACGCGGCACATGGAAAAAGTGGCGGGCATGGAT
GAAGCCATGTGAGTGACACGAAGAAGGATTCCTTCCTTCTTTTCTTCCTC
CCTCCCTCCCTCCCTCCACCCCCCCCTTCATGGTGTGCCTCCATCAAGCT
TCGTGTTTCGACTTTGGCGATGGAAATCTTGGATACCCAGAAAAGCTGCA
ACCAGCACCTTGACCGTGATTTTCATTCATCCTCCCCCCCTCCCTCTTAT
CCCCTCAGCAAATCACGACATGGCGGGTTCTTGTCCCGAGAAAAACTAGG
AGGGCTCGAGGCCCTCCAACGAGGATTGATATCTAATGGATTCCGTCTCT
TGCGGCCTGGTGGTGTGTTGGTCTACAGCACGTGCTCTTTATCTCCCCGA
CAGAACGAGGCCATCGTCACATACTTACTGAAAGCCGAAGCAGGGAAGGC
AGTCCTTGATCCTATTACTGAATTTGGCGAGCCTTTGTTTTCTTCGATTG
GGGAAGGAGAGGAGGGGGAAGGAGGGAGGGAGGGAGGGAAGGGGGTGGGG
CCAGGGCGGTTGCCGTGTCGATGGGGGAGCTTATCGGGCACATTGGTGTT
TGAGCCACGCTTTGGGGAGACGAGTGGGTTGTTTATTGCACGGATTAGAA
AAGAAGAGGAAGAAGTAAGAATTAACTGATACTCTGACCCATTTATTAGA
CGAGTGGGTTGTCTATAGCACGGATTAGAAAAGAAGAGGAAGAAGTAAGA
ACTAACTAATACACTGACGCATTTGTTAGTCGATTGACTGTCTGACTGAG
AAAAAGGCAAAGGAGGGCCGGAGCAAGACCAAGCTAAAGCGATGCGTGCA
TGTGGGTTGGAGGGATGTTCTATTGTATGAAGAGTGTGAGTGCCGCAAAC
GAGCCCTCGCAAAGTCAATGAAAACCGAAACATGCTTGTCACTTCCTCTG
CGTGGCATCTTTGAATAGGGTTGCGATTTCCAAGTTGTCCGTCACATAAG
ACGACTCGTCCATCTCACTAGTTGCAGTGTTCAACGGATCTAACTTCTGA
GGCATCTGGCGCCCATGCTTTGCCCTCTGATTTGGTGGCTGGATGAAGCT
TTGAATGCGCTTTGTGTGTCAAGGCATAACTTACACTCTCACTTTTCCTT
TCCATTTTTTTGCCAAGCCACATCGAGGAGGCCTGCTTGTTTCTCAGGCT
GTCCTGTTTGTGTTTTGGGGGGTTCCCGTGTGGACACTCGCTCCTCTTCA
TCGCCAAATCATATTTTCGACCTGTGCTCCCTGCACCATCCTCCGAAAAC
GCCACTTCGACTGTCTTGAACGAGCAGTGTATCAGCTGCTAAGGCTGTAA
CCCGTGCTAACTCTAATACAGGAGGAGCCACCGGACCTGTCTGCTGCCTC
ATTCACTCGCTCATGTCCTCC
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Coding sequence (CDS) from alignment at scaffold_3:1346667..1348687-

>mRNA_554 ID=mRNA_554|Name=jgi.p|Nanoce1779_2|551325|organism=Nannochloropsis oceanica|type=CDS|length=1647bp|location=Sequence derived from alignment at scaffold_3:1346667..1348687- (Nannochloropsis oceanica)
GGAGGGAAGGGGGTGGGGCCAGGGCGGTTGCCGTGTCGATGGGGGAGCTT
ATCGGGCACATTGGTGTTTGAGCCACGCTTTGGGGAGACGAGTGGGTTGT
TTATTGCACGGATTAGAAAAGAAGAGGAAGAAGTAAGAATTAACTGACAA
ATCACGACATGGCGGGTTCTTGTCCCGAGAAAAACTAGGAGGGCTCGAGG
CCCTCCAACGAGGATTGATATCTAATGGATTCCGTCTCTTGCGGCCTGGT
GGTGTGTTGGTCTACAGCACGTGCTCTTTATCTCCCCGACAGAACGAGGC
CATCGTCACATACTTACTGAAAGCCGAAGCAGGGAAGGCAATGGAAGCCC
GTGGCCAGAAGCGCATGAACCGAGGGACTCGCCGAAAGGAATTACTCGCC
CTGCGTGCCCTCCTCCAGCTTTTTACTCCACAGGAGAGGGAGGGTGAGAA
GAAAGGGGAGCTGTATGACAGAGTATTGGTGGATGCGGACTGCACGCACG
ATGGGTCGACGCGGCACATGGAAAAAGTGGCGGGCATGGATGAAGCCATG
GAGGGAAGGGGGTGGGGCCAGGGCGGTTGCCGTGTCGATGGGGGAGCTTA
TCGGGCACATTGGTGTTTGAGCCACGCTTTGGGGAGACGAGTGGGTTGTT
TATTGCACGGATTAGAAAAGAAGAGGAAGAAGTAAGAATTAACTGACAAA
TCACGACATGGCGGGTTCTTGTCCCGAGAAAAACTAGGAGGGCTCGAGGC
CCTCCAACGAGGATTGATATCTAATGGATTCCGTCTCTTGCGGCCTGGTG
GTGTGTTGGTCTACAGCACGTGCTCTTTATCTCCCCGACAGAACGAGGCC
ATCGTCACATACTTACTGAAAGCCGAAGCAGGGAAGGCAATGGAAGCCCG
TGGCCAGAAGCGCATGAACCGAGGGACTCGCCGAAAGGAATTACTCGCCC
TGCGTGCCCTCCTCCAGCTTTTTACTCCACAGGAGAGGGAGGGTGAGAAG
AAAGGGGAGCTGTATGACAGAGTATTGGTGGATGCGGACTGCACGCACGA
TGGGTCGACGCGGCACATGGAAAAAGTGGCGGGCATGGATGAAGCCATGG
AGGGAAGGGGGTGGGGCCAGGGCGGTTGCCGTGTCGATGGGGGAGCTTAT
CGGGCACATTGGTGTTTGAGCCACGCTTTGGGGAGACGAGTGGGTTGTTT
ATTGCACGGATTAGAAAAGAAGAGGAAGAAGTAAGAATTAACTGACAAAT
CACGACATGGCGGGTTCTTGTCCCGAGAAAAACTAGGAGGGCTCGAGGCC
CTCCAACGAGGATTGATATCTAATGGATTCCGTCTCTTGCGGCCTGGTGG
TGTGTTGGTCTACAGCACGTGCTCTTTATCTCCCCGACAGAACGAGGCCA
TCGTCACATACTTACTGAAAGCCGAAGCAGGGAAGGCAATGGAAGCCCGT
GGCCAGAAGCGCATGAACCGAGGGACTCGCCGAAAGGAATTACTCGCCCT
GCGTGCCCTCCTCCAGCTTTTTACTCCACAGGAGAGGGAGGGTGAGAAGA
AAGGGGAGCTGTATGACAGAGTATTGGTGGATGCGGACTGCACGCACGAT
GGGTCGACGCGGCACATGGAAAAAGTGGCGGGCATGGATGAAGCCAT
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Synonyms
Publications