jgi.p|Nanoce1779_2|592864, mRNA_5537 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592864
Unique NamemRNA_5537
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1225
Alignment locationscaffold_13:660590..661814 +

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Properties
Property NameValue
TranscriptId592950
TrackFilteredModels2
ProteinId592864
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:660590..661814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592864gene_5537Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592864mRNA_5537-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5537CDS_5537Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5537 ID=mRNA_5537|Name=jgi.p|Nanoce1779_2|592864|organism=Nannochloropsis oceanica|type=mRNA|length=1225bp
CAGCTCCGACCGCGGGCGATCATCGCTCATCCTGCGTTTTCTTCGACTGC
TGTACACGTTATTTTGTGATTGTCTTAGATGCAGCAAAGACTCCACAAAT
ACACCCACAACCACAGCCAACCGATGCTTCAGCGCAGCATAGCCAAGTCC
TCCCCCTCCTCGACTGCTTCTCTCCCACCTCCTCTTCCTCCTTCCCCGCT
TACCCAACGCCGCAGTACCTCTGCGGCCTCCCCTGCTTCCCCTCCTTCTG
CCTCTCGCACCAGCGGTAAAAAACATGCCAGCGCAGCGGTCTCGATCGCA
TGTATATCACAAGATTCTCCTACTTTGACCGTTGCTGTTGGCCTGGCATC
AGCTGGCAAGGGAGAAAATGGAAAGGGACGGCAGAAACGAGCCGTCTCCT
CCCCTTCCGCTTTCTCTCCCCAGCATTCTTCCTCCCCCTCCTCCCCATCC
AAAAAAGCGAAGACCACCCACAGCAAAAGCGGCACGCTTAACCGGAGCAT
GGAGGAAGCCAACAGCAGCAGCAGTACCAACAACTTTTTGAATAACACTC
TCCCTTGCAGAGGCAAGCGGGCAGATGGCGACCCCTGCCAACGCAAGGCC
AAAGGTGATTGTGTACACGGTTGCTGTGTCAATTGCTGTGGCAAGATCTG
CGATGCTGCTGTCACGCAATCTGCTGCAGCTCGCTCTTTATCCTCTGCCC
CTTCCTCCTCTCTTTCCCTTTGCCCTGCCCACGCCAAGGTCCACCGACAA
CGGAAGGAGGAAGAAGCCTTGCTCTCCAACCCCATCAATGCCGAAACGAG
CGAAGACCGATGGGGAGGAAAGGATGAGTCAGGCCGGGTCAGAGTAGAAC
AAGGTCACTATAAAGAACCATCAATTGAGTGGGTAGGTGACACGGTAGTC
ATCTTTTCGTTGCGGGATTTCTTGAGGGAATCGAAGTGGAGCAAAGAGGC
GCTAGAGCAGGGGTTGCGGCGAAGGAGGGGGAGGAGGACGATGGGACAAG
GAAAGGAGTTCGGGAAAGAGGGTGTTAGGACCGAGAGGGAAAGGAAGCTG
AGGAGGGCTTGCTTTGAGAAGAAGGTGGAGGAGTTGGTTGCGAAGGCGAA
GAATTCGGTCTAGACAGGCAATTCATTCTGTTGCAGGATAGAGGGAGAGA
GGGGGATAAGAATCTAATTTTTACAGGTAAAGCTTCAGAAATTATAAGCC
AGTTAAATCGAACTTGATGTTTCAG
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protein sequence of jgi.p|Nanoce1779_2|592864

>mRNA_5537-protein ID=mRNA_5537-protein|Name=jgi.p|Nanoce1779_2|592864|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MQQRLHKYTHNHSQPMLQRSIAKSSPSSTASLPPPLPPSPLTQRRSTSAA
SPASPPSASRTSGKKHASAAVSIACISQDSPTLTVAVGLASAGKGENGKG
RQKRAVSSPSAFSPQHSSSPSSPSKKAKTTHSKSGTLNRSMEEANSSSST
NNFLNNTLPCRGKRADGDPCQRKAKGDCVHGCCVNCCGKICDAAVTQSAA
ARSLSSAPSSSLSLCPAHAKVHRQRKEEEALLSNPINAETSEDRWGGKDE
SGRVRVEQGHYKEPSIEWVGDTVVIFSLRDFLRESKWSKEALEQGLRRRR
GRRTMGQGKEFGKEGVRTERERKLRRACFEKKVEELVAKAKNSV*
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mRNA from alignment at scaffold_13:660590..661814+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5537 ID=mRNA_5537|Name=jgi.p|Nanoce1779_2|592864|organism=Nannochloropsis oceanica|type=mRNA|length=1225bp|location=Sequence derived from alignment at scaffold_13:660590..661814+ (Nannochloropsis oceanica)
CAGCTCCGACCGCGGGCGATCATCGCTCATCCTGCGTTTTCTTCGACTGC
TGTACACGTTATTTTGTGATTGTCTTAGATGCAGCAAAGACTCCACAAAT
ACACCCACAACCACAGCCAACCGATGCTTCAGCGCAGCATAGCCAAGTCC
TCCCCCTCCTCGACTGCTTCTCTCCCACCTCCTCTTCCTCCTTCCCCGCT
TACCCAACGCCGCAGTACCTCTGCGGCCTCCCCTGCTTCCCCTCCTTCTG
CCTCTCGCACCAGCGGTAAAAAACATGCCAGCGCAGCGGTCTCGATCGCA
TGTATATCACAAGATTCTCCTACTTTGACCGTTGCTGTTGGCCTGGCATC
AGCTGGCAAGGGAGAAAATGGAAAGGGACGGCAGAAACGAGCCGTCTCCT
CCCCTTCCGCTTTCTCTCCCCAGCATTCTTCCTCCCCCTCCTCCCCATCC
AAAAAAGCGAAGACCACCCACAGCAAAAGCGGCACGCTTAACCGGAGCAT
GGAGGAAGCCAACAGCAGCAGCAGTACCAACAACTTTTTGAATAACACTC
TCCCTTGCAGAGGCAAGCGGGCAGATGGCGACCCCTGCCAACGCAAGGCC
AAAGGTGATTGTGTACACGGTTGCTGTGTCAATTGCTGTGGCAAGATCTG
CGATGCTGCTGTCACGCAATCTGCTGCAGCTCGCTCTTTATCCTCTGCCC
CTTCCTCCTCTCTTTCCCTTTGCCCTGCCCACGCCAAGGTCCACCGACAA
CGGAAGGAGGAAGAAGCCTTGCTCTCCAACCCCATCAATGCCGAAACGAG
CGAAGACCGATGGGGAGGAAAGGATGAGTCAGGCCGGGTCAGAGTAGAAC
AAGGTCACTATAAAGAACCATCAATTGAGTGGGTAGGTGACACGGTAGTC
ATCTTTTCGTTGCGGGATTTCTTGAGGGAATCGAAGTGGAGCAAAGAGGC
GCTAGAGCAGGGGTTGCGGCGAAGGAGGGGGAGGAGGACGATGGGACAAG
GAAAGGAGTTCGGGAAAGAGGGTGTTAGGACCGAGAGGGAAAGGAAGCTG
AGGAGGGCTTGCTTTGAGAAGAAGGTGGAGGAGTTGGTTGCGAAGGCGAA
GAATTCGGTCTAGACAGGCAATTCATTCTGTTGCAGGATAGAGGGAGAGA
GGGGGATAAGAATCTAATTTTTACAGGTAAAGCTTCAGAAATTATAAGCC
AGTTAAATCGAACTTGATGTTTCAG
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Coding sequence (CDS) from alignment at scaffold_13:660590..661814+

>mRNA_5537 ID=mRNA_5537|Name=jgi.p|Nanoce1779_2|592864|organism=Nannochloropsis oceanica|type=CDS|length=1035bp|location=Sequence derived from alignment at scaffold_13:660590..661814+ (Nannochloropsis oceanica)
ATGCAGCAAAGACTCCACAAATACACCCACAACCACAGCCAACCGATGCT
TCAGCGCAGCATAGCCAAGTCCTCCCCCTCCTCGACTGCTTCTCTCCCAC
CTCCTCTTCCTCCTTCCCCGCTTACCCAACGCCGCAGTACCTCTGCGGCC
TCCCCTGCTTCCCCTCCTTCTGCCTCTCGCACCAGCGGTAAAAAACATGC
CAGCGCAGCGGTCTCGATCGCATGTATATCACAAGATTCTCCTACTTTGA
CCGTTGCTGTTGGCCTGGCATCAGCTGGCAAGGGAGAAAATGGAAAGGGA
CGGCAGAAACGAGCCGTCTCCTCCCCTTCCGCTTTCTCTCCCCAGCATTC
TTCCTCCCCCTCCTCCCCATCCAAAAAAGCGAAGACCACCCACAGCAAAA
GCGGCACGCTTAACCGGAGCATGGAGGAAGCCAACAGCAGCAGCAGTACC
AACAACTTTTTGAATAACACTCTCCCTTGCAGAGGCAAGCGGGCAGATGG
CGACCCCTGCCAACGCAAGGCCAAAGGTGATTGTGTACACGGTTGCTGTG
TCAATTGCTGTGGCAAGATCTGCGATGCTGCTGTCACGCAATCTGCTGCA
GCTCGCTCTTTATCCTCTGCCCCTTCCTCCTCTCTTTCCCTTTGCCCTGC
CCACGCCAAGGTCCACCGACAACGGAAGGAGGAAGAAGCCTTGCTCTCCA
ACCCCATCAATGCCGAAACGAGCGAAGACCGATGGGGAGGAAAGGATGAG
TCAGGCCGGGTCAGAGTAGAACAAGGTCACTATAAAGAACCATCAATTGA
GTGGGTAGGTGACACGGTAGTCATCTTTTCGTTGCGGGATTTCTTGAGGG
AATCGAAGTGGAGCAAAGAGGCGCTAGAGCAGGGGTTGCGGCGAAGGAGG
GGGAGGAGGACGATGGGACAAGGAAAGGAGTTCGGGAAAGAGGGTGTTAG
GACCGAGAGGGAAAGGAAGCTGAGGAGGGCTTGCTTTGAGAAGAAGGTGG
AGGAGTTGGTTGCGAAGGCGAAGAATTCGGTCTAG
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Synonyms
Publications