jgi.p|Nanoce1779_2|592862, mRNA_5536 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592862
Unique Name	mRNA_5536
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	934
Alignment location	scaffold_13:659315..660248 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592948
Track	FilteredModels2
ProteinId	592862

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:659315..660248 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592862	gene_5536	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592862	mRNA_5536-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5536	CDS_5536	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:659315..660248+
coding sequence from alignment at scaffold_13:659315..660248+

mRNA sequence

>mRNA_5536 ID=mRNA_5536|Name=jgi.p|Nanoce1779_2|592862|organism=Nannochloropsis oceanica|type=mRNA|length=934bp
TAGTGAGGGAGGAGGGGGTGGAGGTGGGACATGTGGGGGTGGAGTTTGAG
AAGGTGTGGAAAGCCCCAGCCTACAATGACATGAAGGGAATGGGCGGTCA
GGATGGAGGGAAGGCTACGTCGTTTGGGAGTCTATCTGTTGTAGTGACAG
ACCCGCTGCTGCCGGCAGTGCCCGTGACGGAGGTGATGTTTAAGCATCCA
TATGTGATTCACCTGGAGAAGTTCCCGTCGTCGGTATTGGTCAAGATTGA
GTTGTTTGGAATTCCGGAGGAGAAGGAGGAGGGAGAGGAGGAAGATGAGA
AGATTTGGTGGGAAGGGGGAGGAGGAGGGAAGGTGACATTTCGCAAGACC
TTGCTGGGAGGGGGAAGTGTGAGGACGAACGAGGACGGGGGATTCGACTT
TCCCTATCGATTCCTCAGGCTGATGGACGCGGCGCCGGGTGAGTACTATG
TGCAGGCAACAGTGCTAGAAACTGGGGTATATGGACAGTCGTTGCCTTTC
AGCCTTGCGGCAGAGGGGAGGAGCAGGAAGCTGTATGGGCCTCGCCTCAG
AATATAGAGGGAGTGGCGGGGGAGGGCTGGAGGAATTTTTTTTAATATTT
CTATAGCTTTGAAGCGTGATGCCTTTATTTTGTTTTTTATCATGCGTGTG
TGTATTGAGATGGAGACAAAGATGGAAGGTGGCAAGCGAGGGCGCCAACG
CCGAGCCCGGTCTTTTTCCGTTCTCTGTTTTTCTGTTTTTCTCTGAGGGA
GAACGACGAGGACTTGGAATCAAATACAGAGACTTAAGATGGAAAAATAG
TGGCAGAAGTGTATTGTACAATAGGGAGACATGAGATTAATTGATTTGAA
ACGAACGATAGAGAGACACCCAGCAGACAAATGTAGTAGCGCGAAAGCAC
CCCATGAAAGTAACAAAACTGAAAAAATCCATAT

protein sequence of jgi.p|Nanoce1779_2|592862

>mRNA_5536-protein ID=mRNA_5536-protein|Name=jgi.p|Nanoce1779_2|592862|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MKGMGGQDGGKATSFGSLSVVVTDPLLPAVPVTEVMFKHPYVIHLEKFPS
SVLVKIELFGIPEEKEEGEEEDEKIWWEGGGGGKVTFRKTLLGGGSVRTN
EDGGFDFPYRFLRLMDAAPGEYYVQATVLETGVYGQSLPFSLAAEGRSRK
LYGPRLRI*

mRNA from alignment at scaffold_13:659315..660248+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5536 ID=mRNA_5536|Name=jgi.p|Nanoce1779_2|592862|organism=Nannochloropsis oceanica|type=mRNA|length=934bp|location=Sequence derived from alignment at scaffold_13:659315..660248+ (Nannochloropsis oceanica)
TAGTGAGGGAGGAGGGGGTGGAGGTGGGACATGTGGGGGTGGAGTTTGAG
AAGGTGTGGAAAGCCCCAGCCTACAATGACATGAAGGGAATGGGCGGTCA
GGATGGAGGGAAGGCTACGTCGTTTGGGAGTCTATCTGTTGTAGTGACAG
ACCCGCTGCTGCCGGCAGTGCCCGTGACGGAGGTGATGTTTAAGCATCCA
TATGTGATTCACCTGGAGAAGTTCCCGTCGTCGGTATTGGTCAAGATTGA
GTTGTTTGGAATTCCGGAGGAGAAGGAGGAGGGAGAGGAGGAAGATGAGA
AGATTTGGTGGGAAGGGGGAGGAGGAGGGAAGGTGACATTTCGCAAGACC
TTGCTGGGAGGGGGAAGTGTGAGGACGAACGAGGACGGGGGATTCGACTT
TCCCTATCGATTCCTCAGGCTGATGGACGCGGCGCCGGGTGAGTACTATG
TGCAGGCAACAGTGCTAGAAACTGGGGTATATGGACAGTCGTTGCCTTTC
AGCCTTGCGGCAGAGGGGAGGAGCAGGAAGCTGTATGGGCCTCGCCTCAG
AATATAGAGGGAGTGGCGGGGGAGGGCTGGAGGAATTTTTTTTAATATTT
CTATAGCTTTGAAGCGTGATGCCTTTATTTTGTTTTTTATCATGCGTGTG
TGTATTGAGATGGAGACAAAGATGGAAGGTGGCAAGCGAGGGCGCCAACG
CCGAGCCCGGTCTTTTTCCGTTCTCTGTTTTTCTGTTTTTCTCTGAGGGA
GAACGACGAGGACTTGGAATCAAATACAGAGACTTAAGATGGAAAAATAG
TGGCAGAAGTGTATTGTACAATAGGGAGACATGAGATTAATTGATTTGAA
ACGAACGATAGAGAGACACCCAGCAGACAAATGTAGTAGCGCGAAAGCAC
CCCATGAAAGTAACAAAACTGAAAAAATCCATAT

Coding sequence (CDS) from alignment at scaffold_13:659315..660248+

>mRNA_5536 ID=mRNA_5536|Name=jgi.p|Nanoce1779_2|592862|organism=Nannochloropsis oceanica|type=CDS|length=477bp|location=Sequence derived from alignment at scaffold_13:659315..660248+ (Nannochloropsis oceanica)
ATGAAGGGAATGGGCGGTCAGGATGGAGGGAAGGCTACGTCGTTTGGGAG
TCTATCTGTTGTAGTGACAGACCCGCTGCTGCCGGCAGTGCCCGTGACGG
AGGTGATGTTTAAGCATCCATATGTGATTCACCTGGAGAAGTTCCCGTCG
TCGGTATTGGTCAAGATTGAGTTGTTTGGAATTCCGGAGGAGAAGGAGGA
GGGAGAGGAGGAAGATGAGAAGATTTGGTGGGAAGGGGGAGGAGGAGGGA
AGGTGACATTTCGCAAGACCTTGCTGGGAGGGGGAAGTGTGAGGACGAAC
GAGGACGGGGGATTCGACTTTCCCTATCGATTCCTCAGGCTGATGGACGC
GGCGCCGGGTGAGTACTATGTGCAGGCAACAGTGCTAGAAACTGGGGTAT
ATGGACAGTCGTTGCCTTTCAGCCTTGCGGCAGAGGGGAGGAGCAGGAAG
CTGTATGGGCCTCGCCTCAGAATATAG

Synonyms

Publications