jgi.p|Nanoce1779_2|592850, mRNA_5532 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592850
Unique Name	mRNA_5532
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2161
Alignment location	scaffold_13:649297..651563 +

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Properties


Property Name	Value
TranscriptId	592936
Track	FilteredModels2
ProteinId	592850

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:649297..651563 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592850	gene_5532	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592850	mRNA_5532-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5532	CDS_5532	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:649297..651563+
coding sequence from alignment at scaffold_13:649297..651563+

mRNA sequence

>mRNA_5532 ID=mRNA_5532|Name=jgi.p|Nanoce1779_2|592850|organism=Nannochloropsis oceanica|type=mRNA|length=2161bp
CAGGCACACAGCCAGATGGAAGGATCAAGACTACGAAGGCAACAGGCCCT
GGCCCGGCTGCCCGTTCTGCTCCTCCTCATCCCGGCCTTCCTCCTCCTAG
TGATGATGGGGAGCAGCACCCTCCTTCCTACGGCCACTGCTACGGCCACT
CCTTGTAGCAAACAAGATGCGTGTGCCTCCTCATACTCCTTTTTCCTATC
GACCATTCGTGGGGGTGCAGCACGAGCCCATGATAGGGGAGCAGGAGGAG
GAGAAGGAATAACGGGGAAAGCGGGGCATGCGTCTGTGTCACTGCCCTCC
TCCACTTCAGCGCGGTTCATTCGGAATAGTGTGGGTGGCAACAGGCCTAG
TCGACGCAAACAACGGTTCCTGGATGAGCAGCACGAGGAGGAGCAGGAGG
AGGACGACGACGAGGAAACAGATTCGCTGCCTCACGATAGACACATCAGC
ACTGCTGGAGCTTCGATAGGTCGTGGTGGTAAAGGTGCAGTCGCGTTCAC
ATCTCGTCGCCCGACAGGCAGCACCAGCAGCACCAGCAGCACCAGCACCA
GCACCAGCACGAGCGGCAAAAGACGGCGTAAAGCTCCCTCACCATCACCA
CTCTCCTCAGCGATTCCCTCCAAGAAAAGAGGAGAGGAAACAATGGGAGG
AAGAGGTGAGAGACAGTCACCTCGCAAAAGGCATGGCGCTACCACTCCCT
CCCCCTCCTCTCCTCCTTTCCCTTCCGCCCAAACTACCCCCCGCTGGCGA
CACTCTTCTTCCTCCCTCTCCTCCTCCTCCTCCTCCCCCCCTTCCTCCCC
TCCCTCCTCGTCTTTCTCCTTTCCCTTTCGTCTCGGCAGCAGGGGACGTA
CCCTCCTGCGGGAGCTCAAGGCCGCGCTGTCCTCCGAATTGGAAGGGGAG
ATAGTCAAAGCCACAAGACCCGACACCCGTCAAATTAAACCAAAGCATTT
GGAGCCCCTCCTCGCCATCACGTATCAAACCCCCGCCCAGCTCGATCCGT
TCCTCCCCATCCTTCGCAAGCTATGGGCGAAGATGCGAGAGGGCGACAGT
CGAATCACCCTGAAGGCCCTGTACATTCTTCATCGCTTTGCTGCTAGTGG
TGCGCCTGAACAAGCTCCCAACCTGCAAGCCCGCCTGGGAGAGTTAACCC
GACAGATGGACTCCCGGGCTGCTTCCTCCTCCTTCTCCTCCTCTTCCTCC
ATCTCCTCCCCCTTCTCCTCCCCCAAACACATACGGTAAGCTTTTCTTCG
ATGATTTGCCAGGGCCAGAGGGAAAGGCTTCTTCTCTTGGCCTCGGTGCT
CTCCCACCAAGGTAAGCCCTTTTCCACCTCCTCACCCTCCCTCCCTCCCT
CCTTCTCCCAGATACTTCGACACTGGTGCCATGTCGACGGAAGGCCGACC
CTTCGTGACCGCCTATGCCGACTACGTCACCTTCCGCGCCTTGCATTTTG
GCCCCGGCTACCCGGAAGTAGGGCGGGAAGTCGGGGCAGCCGTGGAAAGG
GAGGAAGTAGGGGATGACACAGAAGACGCAGTTGGAGCAGCTGCTGCAGC
GGCAGGAGCAGCAGCAGCAGCGGCGGCGATGGCGGAGGGTAGGGTGGCCC
CGCCACCAGCCGTGTGGAGCGCGGGAGATTTTGACCTGTTTCTGCGGCAG
GTGGAGGACGTATGGGAGAGGGCATGGAGAGTACGGCTCGGAACAAAGGA
GGAGGTGAGTGAATTGACCTGTGCGTGTGTGGAAGCGGTGTACTTTGACC
TGCAGCAGGTGTTGGAGTGCCTTGCGGGGCATTTGAAGGTGGTCTTGAGG
AAAGTTGGGAGCGAGGAGGGGGTGGGGAGGGTGACAAAGGCGGTGGAGGT
GTATGAGAGGGGGGTGGAGGTGTTGAACGAGTATGTGGCAAGGCACAAGG
ACTTGGTGGAGGGGCAGGGGGTGGTGATGGTGCCCATGGCGGTGGTGGCT
TTGGGGACGCCGCCCCGAGTGCCGTCTTTAGAGATGGTCGGACCCGGGGA
GGAGGAGGAGGAGGGAAGGGAAGAGGAGGAGGGAAGGGAGGGAGAGGGGA
AGGGGAAGGAGCTGGGAGAGAAGACGGGAATGGAGAAGAAAGATTGGGAT
TTGAATGTAAAGAAGAAGAACAGAACAACAAAAAAGGTGGAGAGAGAGGA
GGAGGAGGAGG

protein sequence of jgi.p|Nanoce1779_2|592850

>mRNA_5532-protein ID=mRNA_5532-protein|Name=jgi.p|Nanoce1779_2|592850|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp
MEGSRLRRQQALARLPVLLLLIPAFLLLVMMGSSTLLPTATATATPCSKQ
DACASSYSFFLSTIRGGAARAHDRGAGGGEGITGKAGHASVSLPSSTSAR
FIRNSVGGNRPSRRKQRFLDEQHEEEQEEDDDEETDSLPHDRHISTAGAS
IGRGGKGAVAFTSRRPTGSTSSTSSTSTSTSTSGKRRRKAPSPSPLSSAI
PSKKRGEETMGGRGERQSPRKRHGATTPSPSSPPFPSAQTTPRWRHSSSS
LSSSSSSPPSSPPSSSFSFPFRLGSRGRTLLRELKAALSSELEGEIVKAT
RPDTRQIKPKHLEPLLAITYQTPAQLDPFLPILRKLWAKMREGDSRITLK
ALYILHRFAASGAPEQAPNLQARLGELTRQMDSRAASSSFSSSSSISSPF
SSPKHIR*

mRNA from alignment at scaffold_13:649297..651563+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5532 ID=mRNA_5532|Name=jgi.p|Nanoce1779_2|592850|organism=Nannochloropsis oceanica|type=mRNA|length=2267bp|location=Sequence derived from alignment at scaffold_13:649297..651563+ (Nannochloropsis oceanica)
CAGGCACACAGCCAGATGGAAGGATCAAGACTACGAAGGCAACAGGCCCT
GGCCCGGCTGCCCGTTCTGCTCCTCCTCATCCCGGCCTTCCTCCTCCTAG
TGATGATGGGGAGCAGCACCCTCCTTCCTACGGCCACTGCTACGGCCACT
CCTTGTAGCAAACAAGGTTCGTCTGGATGGAACAACTACATTATTCCCAT
CAGTGCGAACGCATTCGTGCCGTCGTCTTTGTACCACTGAACTCTCTCTT
TTCCCCTTTCTCGCAAACACAGATGCGTGTGCCTCCTCATACTCCTTTTT
CCTATCGACCATTCGTGGGGGTGCAGCACGAGCCCATGATAGGGGAGCAG
GAGGAGGAGAAGGAATAACGGGGAAAGCGGGGCATGCGTCTGTGTCACTG
CCCTCCTCCACTTCAGCGCGGTTCATTCGGAATAGTGTGGGTGGCAACAG
GCCTAGTCGACGCAAACAACGGTTCCTGGATGAGCAGCACGAGGAGGAGC
AGGAGGAGGACGACGACGAGGAAACAGATTCGCTGCCTCACGATAGACAC
ATCAGCACTGCTGGAGCTTCGATAGGTCGTGGTGGTAAAGGTGCAGTCGC
GTTCACATCTCGTCGCCCGACAGGCAGCACCAGCAGCACCAGCAGCACCA
GCACCAGCACCAGCACGAGCGGCAAAAGACGGCGTAAAGCTCCCTCACCA
TCACCACTCTCCTCAGCGATTCCCTCCAAGAAAAGAGGAGAGGAAACAAT
GGGAGGAAGAGGTGAGAGACAGTCACCTCGCAAAAGGCATGGCGCTACCA
CTCCCTCCCCCTCCTCTCCTCCTTTCCCTTCCGCCCAAACTACCCCCCGC
TGGCGACACTCTTCTTCCTCCCTCTCCTCCTCCTCCTCCTCCCCCCCTTC
CTCCCCTCCCTCCTCGTCTTTCTCCTTTCCCTTTCGTCTCGGCAGCAGGG
GACGTACCCTCCTGCGGGAGCTCAAGGCCGCGCTGTCCTCCGAATTGGAA
GGGGAGATAGTCAAAGCCACAAGACCCGACACCCGTCAAATTAAACCAAA
GCATTTGGAGCCCCTCCTCGCCATCACGTATCAAACCCCCGCCCAGCTCG
ATCCGTTCCTCCCCATCCTTCGCAAGCTATGGGCGAAGATGCGAGAGGGC
GACAGTCGAATCACCCTGAAGGCCCTGTACATTCTTCATCGCTTTGCTGC
TAGTGGTGCGCCTGAACAAGCTCCCAACCTGCAAGCCCGCCTGGGAGAGT
TAACCCGACAGATGGACTCCCGGGCTGCTTCCTCCTCCTTCTCCTCCTCT
TCCTCCATCTCCTCCCCCTTCTCCTCCCCCAAACACATACGGTAAGCTTT
TCTTCGATGATTTGCCAGGGCCAGAGGGAAAGGCTTCTTCTCTTGGCCTC
GGTGCTCTCCCACCAAGGTAAGCCCTTTTCCACCTCCTCACCCTCCCTCC
CTCCCTCCTTCTCCCAGATACTTCGACACTGGTGCCATGTCGACGGAAGG
CCGACCCTTCGTGACCGCCTATGCCGACTACGTCACCTTCCGCGCCTTGC
ATTTTGGCCCCGGCTACCCGGAAGTAGGGCGGGAAGTCGGGGCAGCCGTG
GAAAGGGAGGAAGTAGGGGATGACACAGAAGACGCAGTTGGAGCAGCTGC
TGCAGCGGCAGGAGCAGCAGCAGCAGCGGCGGCGATGGCGGAGGGTAGGG
TGGCCCCGCCACCAGCCGTGTGGAGCGCGGGAGATTTTGACCTGTTTCTG
CGGCAGGTGGAGGACGTATGGGAGAGGGCATGGAGAGTACGGCTCGGAAC
AAAGGAGGAGGTGAGTGAATTGACCTGTGCGTGTGTGGAAGCGGTGTACT
TTGACCTGCAGCAGGTGTTGGAGTGCCTTGCGGGGCATTTGAAGGTGGTC
TTGAGGAAAGTTGGGAGCGAGGAGGGGGTGGGGAGGGTGACAAAGGCGGT
GGAGGTGTATGAGAGGGGGGTGGAGGTGTTGAACGAGTATGTGGCAAGGC
ACAAGGACTTGGTGGAGGGGCAGGGGGTGGTGATGGTGCCCATGGCGGTG
GTGGCTTTGGGGACGCCGCCCCGAGTGCCGTCTTTAGAGATGGTCGGACC
CGGGGAGGAGGAGGAGGAGGGAAGGGAAGAGGAGGAGGGAAGGGAGGGAG
AGGGGAAGGGGAAGGAGCTGGGAGAGAAGACGGGAATGGAGAAGAAAGAT
TGGGATTTGAATGTAAAGAAGAAGAACAGAACAACAAAAAAGGTGGAGAG
AGAGGAGGAGGAGGAGG

Coding sequence (CDS) from alignment at scaffold_13:649297..651563+

>mRNA_5532 ID=mRNA_5532|Name=jgi.p|Nanoce1779_2|592850|organism=Nannochloropsis oceanica|type=CDS|length=2448bp|location=Sequence derived from alignment at scaffold_13:649297..651563+ (Nannochloropsis oceanica)
ATGGAAGGATCAAGACTACGAAGGCAACAGGCCCTGGCCCGGCTGCCCGT
TCTGCTCCTCCTCATCCCGGCCTTCCTCCTCCTAGTGATGATGGGGAGCA
GCACCCTCCTTCCTACGGCCACTGCTACGGCCACTCCTTGTAGCAAACAA
GATGCGTGTGCCTCCTCATACTCCTTTTTCCTATCGACCATTCGTGGGGG
TGCAGCACGAGCCCATGATAGGGGAGCAGGAGGAGGAGAAGGAATAACGG
GGAAAGCGGGGCATGCGTCTGTGTCACTGCCCTCCTCCACTTCAGCGCGG
TTCATTCGGAATAGTGTGGGTGGCAACAGGCCTAGTCGACGCAAACAACG
GTTCCTGGATGAGCAGCACGAGGAGGAGCAGGAGGAGGACGACGACGAGG
AAACAGATTCGCTGCCTCACGATAGACACATCAGCACTGCTGGAGCTTCG
ATAGGTCGTGGTGGTAAAGGTGCAGTCGCGTTCACATCTCGTCGCCCGAC
AGGCAGCACCAGCAGCACCAGCAGCACCAGCACCAGCACCAGCACGAGCG
GCAAAAGACGGCGTAAAGCTCCCTCACCATCACCACTCTCCTCAGCGATT
CCCTCCAAGAAAAGAGGAGAGGAAACAATGGGAGGAAGAGGTGAGAGACA
GTCACCTCGCAAAAGGCATGGCGCTACCACTCCCTCCCCCTCCTCTCCTC
CTTTCCCTTCCGCCCAAACTACCCCCCGCTGGCGACACTCTTCTTCCTCC
CTCTCCTCCTCCTCCTCCTCCCCCCCTTCCTCCCCTCCCTCCTCGTCTTT
CTCCTTTCCCTTTCGTCTCGGCAGCAGGGGACGTACCCTCCTGCGGGAGC
TCAAGGCCGCGCTGTCCTCCGAATTGGAAGGGGAGATAGTCAAAGCCACA
AGACCCGACACCCGTCAAATTAAACCAAAGCATTTGGAGCCCCTCCTCGC
CATCACGTATCAAACCCCCGCCCAGCTCGATCCGTTCCTCCCCATCCTTC
GCAAGCTATGGGCGAAGATGCGAGAGGGCGACAGTCGAATCACCCTGAAG
GCCCTGTACATTCTTCATCGCTTTGCTGCTAGTGGTGCGCCTGAACAAGC
TCCCAACCTGCAAGCCCGCCTGGGAGAGTTAACCCGACAGATGGACTCCC
GGGCTGCTTCCTCCTCCTTCTCCTCCTCTTCCTCCATCTCCTCCCCCTTC
TCCTCCCCCAAACACATACGGTAAATGGAAGGATCAAGACTACGAAGGCA
ACAGGCCCTGGCCCGGCTGCCCGTTCTGCTCCTCCTCATCCCGGCCTTCC
TCCTCCTAGTGATGATGGGGAGCAGCACCCTCCTTCCTACGGCCACTGCT
ACGGCCACTCCTTGTAGCAAACAAGATGCGTGTGCCTCCTCATACTCCTT
TTTCCTATCGACCATTCGTGGGGGTGCAGCACGAGCCCATGATAGGGGAG
CAGGAGGAGGAGAAGGAATAACGGGGAAAGCGGGGCATGCGTCTGTGTCA
CTGCCCTCCTCCACTTCAGCGCGGTTCATTCGGAATAGTGTGGGTGGCAA
CAGGCCTAGTCGACGCAAACAACGGTTCCTGGATGAGCAGCACGAGGAGG
AGCAGGAGGAGGACGACGACGAGGAAACAGATTCGCTGCCTCACGATAGA
CACATCAGCACTGCTGGAGCTTCGATAGGTCGTGGTGGTAAAGGTGCAGT
CGCGTTCACATCTCGTCGCCCGACAGGCAGCACCAGCAGCACCAGCAGCA
CCAGCACCAGCACCAGCACGAGCGGCAAAAGACGGCGTAAAGCTCCCTCA
CCATCACCACTCTCCTCAGCGATTCCCTCCAAGAAAAGAGGAGAGGAAAC
AATGGGAGGAAGAGGTGAGAGACAGTCACCTCGCAAAAGGCATGGCGCTA
CCACTCCCTCCCCCTCCTCTCCTCCTTTCCCTTCCGCCCAAACTACCCCC
CGCTGGCGACACTCTTCTTCCTCCCTCTCCTCCTCCTCCTCCTCCCCCCC
TTCCTCCCCTCCCTCCTCGTCTTTCTCCTTTCCCTTTCGTCTCGGCAGCA
GGGGACGTACCCTCCTGCGGGAGCTCAAGGCCGCGCTGTCCTCCGAATTG
GAAGGGGAGATAGTCAAAGCCACAAGACCCGACACCCGTCAAATTAAACC
AAAGCATTTGGAGCCCCTCCTCGCCATCACGTATCAAACCCCCGCCCAGC
TCGATCCGTTCCTCCCCATCCTTCGCAAGCTATGGGCGAAGATGCGAGAG
GGCGACAGTCGAATCACCCTGAAGGCCCTGTACATTCTTCATCGCTTTGC
TGCTAGTGGTGCGCCTGAACAAGCTCCCAACCTGCAAGCCCGCCTGGGAG
AGTTAACCCGACAGATGGACTCCCGGGCTGCTTCCTCCTCCTTCTCCTCC
TCTTCCTCCATCTCCTCCCCCTTCTCCTCCCCCAAACACATACGGTAA

Synonyms

Publications