jgi.p|Nanoce1779_2|529194, mRNA_5531 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|529194
Unique Name	mRNA_5531
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	699
Alignment location	scaffold_13:647834..648532 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	529280
Track	FilteredModels2
ProteinId	529194

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:647834..648532 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|529194	gene_5531	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|529194	mRNA_5531-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5531	CDS_5531	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:647834..648532+
coding sequence from alignment at scaffold_13:647834..648532+

mRNA sequence

>mRNA_5531 ID=mRNA_5531|Name=jgi.p|Nanoce1779_2|529194|organism=Nannochloropsis oceanica|type=mRNA|length=699bp
ATGACCTCTCCTCCTGTCTCCCCCTCCCCTGAGCGTCGTCAACGCACCCG
CCGGCTCCTTGCTCTAGCCAGTGCTGGCGTCGCTTTGGCGCTCATCACTT
GCACCACGTCCATCCCCCAGGCGCTGGCCGCGGCAGTTGAAAAAGGAGAG
CACCTTCACCTTGGACAACGCCTTGCGAATGCCGTCCGCGTCAAAACCGG
ATGGCCTGACTGGGTCATTCTCATGGTCATCTCGGCACTACCAGTCGTCG
AGCTTCGAGGCGGGGTTCCCGTGGGGCTTTGGATGGGTATCCCTCCTGCG
CAGACTTTCGCGCTGGCCTGCGTGGGGAACTTCGTGCCGGTGCCCTTTAT
CTTAATGCTGCTAAAGAATGTGCCCTGGTTGATGGAGAAGGTGACGCCGG
TGTTGGAAAAGAAGCTGAAAGATATGACCGGGGCCAGGATGAACTGGCAA
GCCTTGGCGGTGTTTGTGGGCGTGCCATTGCCAGGGACGGGCGCATGGAC
GGGAGCAGCGATTGCGGCCTTGTTTAAGTTGTCATATGCTGAGTCGTTGT
TTGGAGTGGTGGTAGGCATTGTCTCGGCGGCTGCCATCATGACGGCCTTG
GTGTTGGCTGGCTTGTGGGGGGCGGTAGCAGTGGGAGGGGGTTTGCTAGT
GAGTTTGGTGGTGCAGCAGCTGAGCAAGAGGGGAAAGGACCAGAAGTGA

protein sequence of jgi.p|Nanoce1779_2|529194

>mRNA_5531-protein ID=mRNA_5531-protein|Name=jgi.p|Nanoce1779_2|529194|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MTSPPVSPSPERRQRTRRLLALASAGVALALITCTTSIPQALAAAVEKGE
HLHLGQRLANAVRVKTGWPDWVILMVISALPVVELRGGVPVGLWMGIPPA
QTFALACVGNFVPVPFILMLLKNVPWLMEKVTPVLEKKLKDMTGARMNWQ
ALAVFVGVPLPGTGAWTGAAIAALFKLSYAESLFGVVVGIVSAAAIMTAL
VLAGLWGAVAVGGGLLVSLVVQQLSKRGKDQK*

mRNA from alignment at scaffold_13:647834..648532+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5531 ID=mRNA_5531|Name=jgi.p|Nanoce1779_2|529194|organism=Nannochloropsis oceanica|type=mRNA|length=699bp|location=Sequence derived from alignment at scaffold_13:647834..648532+ (Nannochloropsis oceanica)
ATGACCTCTCCTCCTGTCTCCCCCTCCCCTGAGCGTCGTCAACGCACCCG
CCGGCTCCTTGCTCTAGCCAGTGCTGGCGTCGCTTTGGCGCTCATCACTT
GCACCACGTCCATCCCCCAGGCGCTGGCCGCGGCAGTTGAAAAAGGAGAG
CACCTTCACCTTGGACAACGCCTTGCGAATGCCGTCCGCGTCAAAACCGG
ATGGCCTGACTGGGTCATTCTCATGGTCATCTCGGCACTACCAGTCGTCG
AGCTTCGAGGCGGGGTTCCCGTGGGGCTTTGGATGGGTATCCCTCCTGCG
CAGACTTTCGCGCTGGCCTGCGTGGGGAACTTCGTGCCGGTGCCCTTTAT
CTTAATGCTGCTAAAGAATGTGCCCTGGTTGATGGAGAAGGTGACGCCGG
TGTTGGAAAAGAAGCTGAAAGATATGACCGGGGCCAGGATGAACTGGCAA
GCCTTGGCGGTGTTTGTGGGCGTGCCATTGCCAGGGACGGGCGCATGGAC
GGGAGCAGCGATTGCGGCCTTGTTTAAGTTGTCATATGCTGAGTCGTTGT
TTGGAGTGGTGGTAGGCATTGTCTCGGCGGCTGCCATCATGACGGCCTTG
GTGTTGGCTGGCTTGTGGGGGGCGGTAGCAGTGGGAGGGGGTTTGCTAGT
GAGTTTGGTGGTGCAGCAGCTGAGCAAGAGGGGAAAGGACCAGAAGTGA

Coding sequence (CDS) from alignment at scaffold_13:647834..648532+

>mRNA_5531 ID=mRNA_5531|Name=jgi.p|Nanoce1779_2|529194|organism=Nannochloropsis oceanica|type=CDS|length=699bp|location=Sequence derived from alignment at scaffold_13:647834..648532+ (Nannochloropsis oceanica)
ATGACCTCTCCTCCTGTCTCCCCCTCCCCTGAGCGTCGTCAACGCACCCG
CCGGCTCCTTGCTCTAGCCAGTGCTGGCGTCGCTTTGGCGCTCATCACTT
GCACCACGTCCATCCCCCAGGCGCTGGCCGCGGCAGTTGAAAAAGGAGAG
CACCTTCACCTTGGACAACGCCTTGCGAATGCCGTCCGCGTCAAAACCGG
ATGGCCTGACTGGGTCATTCTCATGGTCATCTCGGCACTACCAGTCGTCG
AGCTTCGAGGCGGGGTTCCCGTGGGGCTTTGGATGGGTATCCCTCCTGCG
CAGACTTTCGCGCTGGCCTGCGTGGGGAACTTCGTGCCGGTGCCCTTTAT
CTTAATGCTGCTAAAGAATGTGCCCTGGTTGATGGAGAAGGTGACGCCGG
TGTTGGAAAAGAAGCTGAAAGATATGACCGGGGCCAGGATGAACTGGCAA
GCCTTGGCGGTGTTTGTGGGCGTGCCATTGCCAGGGACGGGCGCATGGAC
GGGAGCAGCGATTGCGGCCTTGTTTAAGTTGTCATATGCTGAGTCGTTGT
TTGGAGTGGTGGTAGGCATTGTCTCGGCGGCTGCCATCATGACGGCCTTG
GTGTTGGCTGGCTTGTGGGGGGCGGTAGCAGTGGGAGGGGGTTTGCTAGT
GAGTTTGGTGGTGCAGCAGCTGAGCAAGAGGGGAAAGGACCAGAAGTGA

Synonyms

Publications