jgi.p|Nanoce1779_2|639941, mRNA_5529 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|639941
Unique NamemRNA_5529
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1023
Alignment locationscaffold_13:639799..640821 +

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Properties
Property NameValue
TranscriptId640027
TrackFilteredModels2
ProteinId639941
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:639799..640821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639941gene_5529Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639941mRNA_5529-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5529CDS_5529Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5529 ID=mRNA_5529|Name=jgi.p|Nanoce1779_2|639941|organism=Nannochloropsis oceanica|type=mRNA|length=1023bp
ATGTTGGCCTTTCTACCCCCCACGACCACCGTATATCATCATCATATCAT
CAGTACGAAAGCGTCGTCCTCGTCTGCCTCCTTTTCTTCTGCTCCGTCCT
CTCTATTGGCCTCCACCTCCACCAGCAGTAGCAGCAGTAGCTCTCGCCGG
GACCTTGTCGAGAACATCGGGCGTCTTGGTCTGGGCTTGGGCGCGCTCAC
CCTCCTCCCCTCCCTCACCGTCTCCGCCGCAGCCGACCGTAGCGCACCGA
TTGCCGTCCTCGGTGCCCGCGGCAAGACGGGCAAGCTCATCGTGCAACAA
CTCCTGGCGCAAGGGAAGTGCGTGCGTGCACTCTCCTACCAACCCTTTGA
GTACGACAAAAAGGACATTCCCTCGGGCGTGGACGTTTCCAGCCTTCTCA
CTTACGCCATTGGTGACGTAACCAAGCCTGAAACTCTTTCTCCCGCCATC
AAGGGAGCGAGTGCGGTTATTTTCGCGGCGTCAGCAAGTAAAAACGGCGG
GAAAGCCCAAGCCGTGGATTGTGACGGTGTCGAGAACATCGCCCGTTCTT
GCATCGCGGAGAAGATTCCTCGGCTCCTCGTTATTTCCTCGGGGGCTGTC
ACCAAGCCCGATTCATTCGGGTATAAAGTTACGAATTTGTTCGCACGGGG
GATCATGGGCCTGAAGCTGGAGGGCGAGAACAGGCTGCGTGCCCTCTATG
CTTCCTCTGCCCCTCCTGGAGTCACCTATACCGTCCTCCGTCCGGGAGGC
CTGTCAAATGACAAGGGGCTAGGAGTTTCTGGAATAGAGCTCAATCAGAA
GGATACGATCATTGGGGAGATTTCCCGGGTGGATGTGGCAGCGACCGCGG
TAGCAGCAATAGGAGCAGCAGACGCAGCAGATGTGACTTTCGAGGTGTAT
GAAATCGGGAGGAGGACACCACTGCAGAAGGAGTTTCCTGAGAAGAGCGG
GATGGAAAGGAGGGCGGGGACATGGGAGGAGATCTTCAAGGGTTTGGTGA
AGGATAGCGCGCTGCAGGTATAG
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protein sequence of jgi.p|Nanoce1779_2|639941

>mRNA_5529-protein ID=mRNA_5529-protein|Name=jgi.p|Nanoce1779_2|639941|organism=Nannochloropsis oceanica|type=polypeptide|length=341bp
MLAFLPPTTTVYHHHIISTKASSSSASFSSAPSSLLASTSTSSSSSSSRR
DLVENIGRLGLGLGALTLLPSLTVSAAADRSAPIAVLGARGKTGKLIVQQ
LLAQGKCVRALSYQPFEYDKKDIPSGVDVSSLLTYAIGDVTKPETLSPAI
KGASAVIFAASASKNGGKAQAVDCDGVENIARSCIAEKIPRLLVISSGAV
TKPDSFGYKVTNLFARGIMGLKLEGENRLRALYASSAPPGVTYTVLRPGG
LSNDKGLGVSGIELNQKDTIIGEISRVDVAATAVAAIGAADAADVTFEVY
EIGRRTPLQKEFPEKSGMERRAGTWEEIFKGLVKDSALQV*
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mRNA from alignment at scaffold_13:639799..640821+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5529 ID=mRNA_5529|Name=jgi.p|Nanoce1779_2|639941|organism=Nannochloropsis oceanica|type=mRNA|length=1023bp|location=Sequence derived from alignment at scaffold_13:639799..640821+ (Nannochloropsis oceanica)
ATGTTGGCCTTTCTACCCCCCACGACCACCGTATATCATCATCATATCAT CAGTACGAAAGCGTCGTCCTCGTCTGCCTCCTTTTCTTCTGCTCCGTCCT CTCTATTGGCCTCCACCTCCACCAGCAGTAGCAGCAGTAGCTCTCGCCGG GACCTTGTCGAGAACATCGGGCGTCTTGGTCTGGGCTTGGGCGCGCTCAC CCTCCTCCCCTCCCTCACCGTCTCCGCCGCAGCCGACCGTAGCGCACCGA TTGCCGTCCTCGGTGCCCGCGGCAAGACGGGCAAGCTCATCGTGCAACAA CTCCTGGCGCAAGGGAAGTGCGTGCGTGCACTCTCCTACCAACCCTTTGA GTACGACAAAAAGGACATTCCCTCGGGCGTGGACGTTTCCAGCCTTCTCA CTTACGCCATTGGTGACGTAACCAAGCCTGAAACTCTTTCTCCCGCCATC AAGGGAGCGAGTGCGGTTATTTTCGCGGCGTCAGCAAGTAAAAACGGCGG GAAAGCCCAAGCCGTGGATTGTGACGGTGTCGAGAACATCGCCCGTTCTT GCATCGCGGAGAAGATTCCTCGGCTCCTCGTTATTTCCTCGGGGGCTGTC ACCAAGCCCGATTCATTCGGGTATAAAGTTACGAATTTGTTCGCACGGGG GATCATGGGCCTGAAGCTGGAGGGCGAGAACAGGCTGCGTGCCCTCTATG CTTCCTCTGCCCCTCCTGGAGTCACCTATACCGTCCTCCGTCCGGGAGGC CTGTCAAATGACAAGGGGCTAGGAGTTTCTGGAATAGAGCTCAATCAGAA GGATACGATCATTGGGGAGATTTCCCGGGTGGATGTGGCAGCGACCGCGG TAGCAGCAATAGGAGCAGCAGACGCAGCAGATGTGACTTTCGAGGTGTAT GAAATCGGGAGGAGGACACCACTGCAGAAGGAGTTTCCTGAGAAGAGCGG GATGGAAAGGAGGGCGGGGACATGGGAGGAGATCTTCAAGGGTTTGGTGA AGGATAGCGCGCTGCAGGTATAG
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Coding sequence (CDS) from alignment at scaffold_13:639799..640821+

>mRNA_5529 ID=mRNA_5529|Name=jgi.p|Nanoce1779_2|639941|organism=Nannochloropsis oceanica|type=CDS|length=1023bp|location=Sequence derived from alignment at scaffold_13:639799..640821+ (Nannochloropsis oceanica)
ATGTTGGCCTTTCTACCCCCCACGACCACCGTATATCATCATCATATCAT
CAGTACGAAAGCGTCGTCCTCGTCTGCCTCCTTTTCTTCTGCTCCGTCCT
CTCTATTGGCCTCCACCTCCACCAGCAGTAGCAGCAGTAGCTCTCGCCGG
GACCTTGTCGAGAACATCGGGCGTCTTGGTCTGGGCTTGGGCGCGCTCAC
CCTCCTCCCCTCCCTCACCGTCTCCGCCGCAGCCGACCGTAGCGCACCGA
TTGCCGTCCTCGGTGCCCGCGGCAAGACGGGCAAGCTCATCGTGCAACAA
CTCCTGGCGCAAGGGAAGTGCGTGCGTGCACTCTCCTACCAACCCTTTGA
GTACGACAAAAAGGACATTCCCTCGGGCGTGGACGTTTCCAGCCTTCTCA
CTTACGCCATTGGTGACGTAACCAAGCCTGAAACTCTTTCTCCCGCCATC
AAGGGAGCGAGTGCGGTTATTTTCGCGGCGTCAGCAAGTAAAAACGGCGG
GAAAGCCCAAGCCGTGGATTGTGACGGTGTCGAGAACATCGCCCGTTCTT
GCATCGCGGAGAAGATTCCTCGGCTCCTCGTTATTTCCTCGGGGGCTGTC
ACCAAGCCCGATTCATTCGGGTATAAAGTTACGAATTTGTTCGCACGGGG
GATCATGGGCCTGAAGCTGGAGGGCGAGAACAGGCTGCGTGCCCTCTATG
CTTCCTCTGCCCCTCCTGGAGTCACCTATACCGTCCTCCGTCCGGGAGGC
CTGTCAAATGACAAGGGGCTAGGAGTTTCTGGAATAGAGCTCAATCAGAA
GGATACGATCATTGGGGAGATTTCCCGGGTGGATGTGGCAGCGACCGCGG
TAGCAGCAATAGGAGCAGCAGACGCAGCAGATGTGACTTTCGAGGTGTAT
GAAATCGGGAGGAGGACACCACTGCAGAAGGAGTTTCCTGAGAAGAGCGG
GATGGAAAGGAGGGCGGGGACATGGGAGGAGATCTTCAAGGGTTTGGTGA
AGGATAGCGCGCTGCAGGTATAG
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Synonyms
Publications