jgi.p|Nanoce1779_2|592836, mRNA_5526 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592836
Unique Name	mRNA_5526
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2470
Alignment location	scaffold_13:632828..635297 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592922
Track	FilteredModels2
ProteinId	592836

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:632828..635297 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592836	gene_5526	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592836	mRNA_5526-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5526	CDS_5526	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:632828..635297-
coding sequence from alignment at scaffold_13:632828..635297-

mRNA sequence

>mRNA_5526 ID=mRNA_5526|Name=jgi.p|Nanoce1779_2|592836|organism=Nannochloropsis oceanica|type=mRNA|length=2470bp
GGGGGAGGGGCTGTGGAGGGGGAGGGCTGGAGGGAGGGCGGTGGAGGCAT
TGAGAGCCTGGGCAGCTCGAAGGATGCTTAGACAGGCTCTTGAGAAGGGA
CAGAGAGGAGGGGAGGAGGAGTTGCAAGCAGGATCAGCACTGCCCTGGCG
AGTGATGCAACTGTTGAAAAAATGTGAGGGATGGAAGGTGATAGTGGAGG
AGGAGAAAGGGTACCGGGCGCTCTTGGTTAGAGGGGAGGAGCATTTTGAG
AGCCGTGGGGAAGAAAGAGGGATACGTGCATGGGTGGCTTATGTGGTCGC
TCTCAAGATGCAAAGGGCGGCTTTGAAGAGGGTGGAGCGCTCAATGGATC
CTCGGTGTCATCGCCAGCAGGAGCAGCAGGAGGAACAGCAGCAGGAGGAG
CAGCAGCTGTCTGCACTCTCCCCACGCTTACCATCCGCATCATTCCTTCC
CTCTCTCCCTCCCCCCCACCTCCTCCACGCCGCCTACACCCGCCTCGCTC
ACCGAAGGCTCCATCTCGCATTGGACAGATGGAAGTTTCATTCCCACCAG
CAGGGGCGCCTCTCCTCCTCCCTCGTGCGTGCCGGCTGTCATTACTTACT
CACGCAATGGCAGGGCCTGCGACGGGCGTTACAGCAACAAGAGCGGAGAG
AAACGGCAGCACGTATGGCTATTGAAAAGGTGGTGGCTCCCCACCAGAGG
AGAAGGGGATTTAGAGTATGGTTGAGGCGCAGGGAGGAGAGGGAGAGAGG
GAGGGAATGGAGAAGGGGAAGAGTAGAGGGTTTCTGTGGGTGGAGGGGGA
GGGTGTGGACGATGAGGCGTTTGAGAGAGATGGTGGGGCGGAGGAGGACG
GAGAGAGAGAGGGAGGGGAGGGCATTGATGCTGTGGGAGGGAGGAGGGGA
AGGGAAGATGAGGAGGAGATGGAGGAAGAGAAAGCTTGGTCGGGTTTGGA
GGAAGTGGCATGCTTTCCGCGAGCAGCAGCATCTAGTACGATGTCTGATG
CTAACGAATAAAGATAATATAGCTTTAGCATATCTAAGAGTGTGGAGGCA
GGCGCTGCAGGAGAAGGAGTTGGTCGAGTGGCAGGCAGGGGCACTGCACC
GTTGGTTTCATCGGTGGTATCGAAGGGCAAAAGCCCGAGCGGCGCGACGA
GTTAGGGTGGCCGAAACAGTAGGAAGGTATGTGCGGAGGGTAAGGAAGGA
AAAAGGGTTGAAAATATGGAGAAAGTGGATGGAAGGAAAGAGGAGGGACA
GGGTTGTTGTGGGGGAGAGAATGGCTAGAGTGGGGGAGGGGGGAAGGAGG
ATGAAGGTGCTGGTGGGCTTGAGGAGGTGGAAAAATTGGGTGGCGGAGAA
GCAGCGAAGGAGGAAGGAGAGCGAGGAGAGGGAGGGTTTCTATTGCAGGA
ACAGGTTGTTACGGAATGCGATGTATGGATGGAGGGAGAAATGCCGAGGA
AGGGGGGGGAGGCAGAGGTGGATGCTGCTGGCGGCAAGGTGGTATCGAAG
GAGGATAATGAAGGAGGGGCTCCGGGAGAGATGGGGGGCGTGGGTGAAAG
GAAAGGAGAGGAGGGAGAGGAAGAGGAGGACGTTGAAGAACATGGAGGAG
AGGGCGAGGAGGTGGAGGGAGAGGAGGTGGGTAAGCTGCTGGCAGAGGTG
GAGATACTCACAAGAGTTCGTTAGGGGCCAAGAAGAGATGGCGGTGGAAT
GGGAGAGACGACGAAGGATAGAGGGAGGGAGAAAGAGAGGGAAGAGGAGG
ATGAGGAGAAGGATGAGGAATGTGGAGATTTCGGGAAGGGGGTTCATTTC
GCTGTTGCAGTGGTCGGTGCTGCTGGGGCTGCAGCAGCGGCAGGCGATGA
TGGCGGCGGAGCAGGCGCGAGAATTGATTTTGGCATCGGAGGGGTGGAGA
AGATGGGTGTGCCGAGTGTGGATTGGAAGGAGGATAAGGGTGCAGGAGAA
CACATGGAAATGCTGGGAGAGGGACAGGATGAGGGAGTATTTGACGAGGT
GGAGAAAGTGGGTGAGGCAACGGAAGGAAAGGAACTTGGTCCGGTCGTTA
AGGAGAGAAGTGAGGGTGTTCCGTCGGCAACAACAGCAGCAGCAGGAGGA
AGGAGATGGAGCGGGAGGGGTAGGGCAGCTGGAGGCTCAGCAGAGCCAGA
AGTATCCGCAGGAGCAGCAGCAGGAGCAGCAGCAGCAGCAGCCGCCGCCA
GGTGCAAATGAGATAGGGAGGGAAGGAGGGAGGCAACATGGCCCGCGCAT
CGTTCGTAGGAAGCGATCGAAGACGAAGACGAAGTAGGAAAACATGATGA
AAAGGACCTGAGTGTCTTGATGAGGATGTAAGTCATGTGCTGTCATAAAG
CAGACTTTGACGACGGAGGTCAAATGAGTGCGGGAGCCCAGTGTAAGGGA
GGAAAAAAGACGGCGTGAAGAAACAGTTGTGTGAGCAAAATACACCAAAG
AAAATACACCTCCTTCACAC

protein sequence of jgi.p|Nanoce1779_2|592836

>mRNA_5526-protein ID=mRNA_5526-protein|Name=jgi.p|Nanoce1779_2|592836|organism=Nannochloropsis oceanica|type=polypeptide|length=738bp
MLRQALEKGQRGGEEELQAGSALPWRVMQLLKKCEGWKVIVEEEKGYRAL
LVRGEEHFESRGEERGIRAWVAYVVALKMQRAALKRVERSMDPRCHRQQE
QQEEQQQEEQQLSALSPRLPSASFLPSLPPPHLLHAAYTRLAHRRLHLAL
DRWKFHSHQQGRLSSSLVRAGCHYLLTQWQGLRRALQQQERRETAARMAI
EKVVAPHQRRRGFRVWLRRREERERGREWRRGRVEGFCGWRGRVWTMRRL
REMVGRRRTEREREGRALMLWEGGGEGKMRRRWRKRKLGRVWRKWHAFRE
QQHLVRCLMLTNKDNIALAYLRVWRQALQEKELVEWQAGALHRWFHRWYR
RAKARAARRVRVAETVGRYVRRVRKEKGLKIWRKWMEGKRRDRVVVGERM
ARVGEGGRRMKVLVGLRRWKNWVAEKQRRRKESEEREGFYCRNRLLRNAM
YGWREKCRGRGGRQRWMLLAARWYRRRIMKEGLRERWGAWVKGKERRERK
RRTLKNMEERARRWRERRWVSCWQRWRYSQEFVRGQEEMAVEWERRRRIE
GGRKRGKRRMRRRMRNVEISGRGFISLLQWSVLLGLQQRQAMMAAEQARE
LILASEGWRRWVCRVWIGRRIRVQENTWKCWERDRMREYLTRWRKWVRQR
KERNLVRSLRREVRVFRRQQQQQQEEGDGAGGVGQLEAQQSQKYPQEQQQ
EQQQQQPPPGANEIGREGGRQHGPRIVRRKRSKTKTK*

mRNA from alignment at scaffold_13:632828..635297-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5526 ID=mRNA_5526|Name=jgi.p|Nanoce1779_2|592836|organism=Nannochloropsis oceanica|type=mRNA|length=2470bp|location=Sequence derived from alignment at scaffold_13:632828..635297- (Nannochloropsis oceanica)
GGGGGAGGGGCTGTGGAGGGGGAGGGCTGGAGGGAGGGCGGTGGAGGCAT
TGAGAGCCTGGGCAGCTCGAAGGATGCTTAGACAGGCTCTTGAGAAGGGA
CAGAGAGGAGGGGAGGAGGAGTTGCAAGCAGGATCAGCACTGCCCTGGCG
AGTGATGCAACTGTTGAAAAAATGTGAGGGATGGAAGGTGATAGTGGAGG
AGGAGAAAGGGTACCGGGCGCTCTTGGTTAGAGGGGAGGAGCATTTTGAG
AGCCGTGGGGAAGAAAGAGGGATACGTGCATGGGTGGCTTATGTGGTCGC
TCTCAAGATGCAAAGGGCGGCTTTGAAGAGGGTGGAGCGCTCAATGGATC
CTCGGTGTCATCGCCAGCAGGAGCAGCAGGAGGAACAGCAGCAGGAGGAG
CAGCAGCTGTCTGCACTCTCCCCACGCTTACCATCCGCATCATTCCTTCC
CTCTCTCCCTCCCCCCCACCTCCTCCACGCCGCCTACACCCGCCTCGCTC
ACCGAAGGCTCCATCTCGCATTGGACAGATGGAAGTTTCATTCCCACCAG
CAGGGGCGCCTCTCCTCCTCCCTCGTGCGTGCCGGCTGTCATTACTTACT
CACGCAATGGCAGGGCCTGCGACGGGCGTTACAGCAACAAGAGCGGAGAG
AAACGGCAGCACGTATGGCTATTGAAAAGGTGGTGGCTCCCCACCAGAGG
AGAAGGGGATTTAGAGTATGGTTGAGGCGCAGGGAGGAGAGGGAGAGAGG
GAGGGAATGGAGAAGGGGAAGAGTAGAGGGTTTCTGTGGGTGGAGGGGGA
GGGTGTGGACGATGAGGCGTTTGAGAGAGATGGTGGGGCGGAGGAGGACG
GAGAGAGAGAGGGAGGGGAGGGCATTGATGCTGTGGGAGGGAGGAGGGGA
AGGGAAGATGAGGAGGAGATGGAGGAAGAGAAAGCTTGGTCGGGTTTGGA
GGAAGTGGCATGCTTTCCGCGAGCAGCAGCATCTAGTACGATGTCTGATG
CTAACGAATAAAGATAATATAGCTTTAGCATATCTAAGAGTGTGGAGGCA
GGCGCTGCAGGAGAAGGAGTTGGTCGAGTGGCAGGCAGGGGCACTGCACC
GTTGGTTTCATCGGTGGTATCGAAGGGCAAAAGCCCGAGCGGCGCGACGA
GTTAGGGTGGCCGAAACAGTAGGAAGGTATGTGCGGAGGGTAAGGAAGGA
AAAAGGGTTGAAAATATGGAGAAAGTGGATGGAAGGAAAGAGGAGGGACA
GGGTTGTTGTGGGGGAGAGAATGGCTAGAGTGGGGGAGGGGGGAAGGAGG
ATGAAGGTGCTGGTGGGCTTGAGGAGGTGGAAAAATTGGGTGGCGGAGAA
GCAGCGAAGGAGGAAGGAGAGCGAGGAGAGGGAGGGTTTCTATTGCAGGA
ACAGGTTGTTACGGAATGCGATGTATGGATGGAGGGAGAAATGCCGAGGA
AGGGGGGGGAGGCAGAGGTGGATGCTGCTGGCGGCAAGGTGGTATCGAAG
GAGGATAATGAAGGAGGGGCTCCGGGAGAGATGGGGGGCGTGGGTGAAAG
GAAAGGAGAGGAGGGAGAGGAAGAGGAGGACGTTGAAGAACATGGAGGAG
AGGGCGAGGAGGTGGAGGGAGAGGAGGTGGGTAAGCTGCTGGCAGAGGTG
GAGATACTCACAAGAGTTCGTTAGGGGCCAAGAAGAGATGGCGGTGGAAT
GGGAGAGACGACGAAGGATAGAGGGAGGGAGAAAGAGAGGGAAGAGGAGG
ATGAGGAGAAGGATGAGGAATGTGGAGATTTCGGGAAGGGGGTTCATTTC
GCTGTTGCAGTGGTCGGTGCTGCTGGGGCTGCAGCAGCGGCAGGCGATGA
TGGCGGCGGAGCAGGCGCGAGAATTGATTTTGGCATCGGAGGGGTGGAGA
AGATGGGTGTGCCGAGTGTGGATTGGAAGGAGGATAAGGGTGCAGGAGAA
CACATGGAAATGCTGGGAGAGGGACAGGATGAGGGAGTATTTGACGAGGT
GGAGAAAGTGGGTGAGGCAACGGAAGGAAAGGAACTTGGTCCGGTCGTTA
AGGAGAGAAGTGAGGGTGTTCCGTCGGCAACAACAGCAGCAGCAGGAGGA
AGGAGATGGAGCGGGAGGGGTAGGGCAGCTGGAGGCTCAGCAGAGCCAGA
AGTATCCGCAGGAGCAGCAGCAGGAGCAGCAGCAGCAGCAGCCGCCGCCA
GGTGCAAATGAGATAGGGAGGGAAGGAGGGAGGCAACATGGCCCGCGCAT
CGTTCGTAGGAAGCGATCGAAGACGAAGACGAAGTAGGAAAACATGATGA
AAAGGACCTGAGTGTCTTGATGAGGATGTAAGTCATGTGCTGTCATAAAG
CAGACTTTGACGACGGAGGTCAAATGAGTGCGGGAGCCCAGTGTAAGGGA
GGAAAAAAGACGGCGTGAAGAAACAGTTGTGTGAGCAAAATACACCAAAG
AAAATACACCTCCTTCACAC

Coding sequence (CDS) from alignment at scaffold_13:632828..635297-

>mRNA_5526 ID=mRNA_5526|Name=jgi.p|Nanoce1779_2|592836|organism=Nannochloropsis oceanica|type=CDS|length=2214bp|location=Sequence derived from alignment at scaffold_13:632828..635297- (Nannochloropsis oceanica)
ATGCTTAGACAGGCTCTTGAGAAGGGACAGAGAGGAGGGGAGGAGGAGTT
GCAAGCAGGATCAGCACTGCCCTGGCGAGTGATGCAACTGTTGAAAAAAT
GTGAGGGATGGAAGGTGATAGTGGAGGAGGAGAAAGGGTACCGGGCGCTC
TTGGTTAGAGGGGAGGAGCATTTTGAGAGCCGTGGGGAAGAAAGAGGGAT
ACGTGCATGGGTGGCTTATGTGGTCGCTCTCAAGATGCAAAGGGCGGCTT
TGAAGAGGGTGGAGCGCTCAATGGATCCTCGGTGTCATCGCCAGCAGGAG
CAGCAGGAGGAACAGCAGCAGGAGGAGCAGCAGCTGTCTGCACTCTCCCC
ACGCTTACCATCCGCATCATTCCTTCCCTCTCTCCCTCCCCCCCACCTCC
TCCACGCCGCCTACACCCGCCTCGCTCACCGAAGGCTCCATCTCGCATTG
GACAGATGGAAGTTTCATTCCCACCAGCAGGGGCGCCTCTCCTCCTCCCT
CGTGCGTGCCGGCTGTCATTACTTACTCACGCAATGGCAGGGCCTGCGAC
GGGCGTTACAGCAACAAGAGCGGAGAGAAACGGCAGCACGTATGGCTATT
GAAAAGGTGGTGGCTCCCCACCAGAGGAGAAGGGGATTTAGAGTATGGTT
GAGGCGCAGGGAGGAGAGGGAGAGAGGGAGGGAATGGAGAAGGGGAAGAG
TAGAGGGTTTCTGTGGGTGGAGGGGGAGGGTGTGGACGATGAGGCGTTTG
AGAGAGATGGTGGGGCGGAGGAGGACGGAGAGAGAGAGGGAGGGGAGGGC
ATTGATGCTGTGGGAGGGAGGAGGGGAAGGGAAGATGAGGAGGAGATGGA
GGAAGAGAAAGCTTGGTCGGGTTTGGAGGAAGTGGCATGCTTTCCGCGAG
CAGCAGCATCTAGTACGATGTCTGATGCTAACGAATAAAGATAATATAGC
TTTAGCATATCTAAGAGTGTGGAGGCAGGCGCTGCAGGAGAAGGAGTTGG
TCGAGTGGCAGGCAGGGGCACTGCACCGTTGGTTTCATCGGTGGTATCGA
AGGGCAAAAGCCCGAGCGGCGCGACGAGTTAGGGTGGCCGAAACAGTAGG
AAGGTATGTGCGGAGGGTAAGGAAGGAAAAAGGGTTGAAAATATGGAGAA
AGTGGATGGAAGGAAAGAGGAGGGACAGGGTTGTTGTGGGGGAGAGAATG
GCTAGAGTGGGGGAGGGGGGAAGGAGGATGAAGGTGCTGGTGGGCTTGAG
GAGGTGGAAAAATTGGGTGGCGGAGAAGCAGCGAAGGAGGAAGGAGAGCG
AGGAGAGGGAGGGTTTCTATTGCAGGAACAGGTTGTTACGGAATGCGATG
TATGGATGGAGGGAGAAATGCCGAGGAAGGGGGGGGAGGCAGAGGTGGAT
GCTGCTGGCGGCAAGGTGGTATCGAAGGAGGATAATGAAGGAGGGGCTCC
GGGAGAGATGGGGGGCGTGGGTGAAAGGAAAGGAGAGGAGGGAGAGGAAG
AGGAGGACGTTGAAGAACATGGAGGAGAGGGCGAGGAGGTGGAGGGAGAG
GAGGTGGGTAAGCTGCTGGCAGAGGTGGAGATACTCACAAGAGTTCGTTA
GGGGCCAAGAAGAGATGGCGGTGGAATGGGAGAGACGACGAAGGATAGAG
GGAGGGAGAAAGAGAGGGAAGAGGAGGATGAGGAGAAGGATGAGGAATGT
GGAGATTTCGGGAAGGGGGTTCATTTCGCTGTTGCAGTGGTCGGTGCTGC
TGGGGCTGCAGCAGCGGCAGGCGATGATGGCGGCGGAGCAGGCGCGAGAA
TTGATTTTGGCATCGGAGGGGTGGAGAAGATGGGTGTGCCGAGTGTGGAT
TGGAAGGAGGATAAGGGTGCAGGAGAACACATGGAAATGCTGGGAGAGGG
ACAGGATGAGGGAGTATTTGACGAGGTGGAGAAAGTGGGTGAGGCAACGG
AAGGAAAGGAACTTGGTCCGGTCGTTAAGGAGAGAAGTGAGGGTGTTCCG
TCGGCAACAACAGCAGCAGCAGGAGGAAGGAGATGGAGCGGGAGGGGTAG
GGCAGCTGGAGGCTCAGCAGAGCCAGAAGTATCCGCAGGAGCAGCAGCAG
GAGCAGCAGCAGCAGCAGCCGCCGCCAGGTGCAAATGAGATAGGGAGGGA
AGGAGGGAGGCAACATGGCCCGCGCATCGTTCGTAGGAAGCGATCGAAGA
CGAAGACGAAGTAG

Synonyms

Publications