jgi.p|Nanoce1779_2|592833, mRNA_5524 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592833
Unique NamemRNA_5524
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1251
Alignment locationscaffold_13:628789..630039 +

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Properties
Property NameValue
TranscriptId592919
TrackFilteredModels2
ProteinId592833
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:628789..630039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592833gene_5524Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592833mRNA_5524-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5524CDS_5524Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5524 ID=mRNA_5524|Name=jgi.p|Nanoce1779_2|592833|organism=Nannochloropsis oceanica|type=mRNA|length=1251bp
GCCAATCCACTCTTTGCCTCCTTCTTATTTCTCATCCTCATCGCCATCCT
TCAATGCCACGTGCTGGTACAGTAAGGGTGATGTGGAAGCGGAGGAGAAA
GCGGAAAGGGAGCAAAAGCTGAAGGAGAAGAAGGAGGACGAGGACGAAGA
CTACTTCGACGCCCTCTCTCCCTCCAGCACCAGTAGCTCCCCCCATGAGG
ACAATCCGCGCCCGAAGCAGCACCAGCATTGGCAGCAAGAGCACCAGGAC
AATGACACCACCTTTTCGACTGGAGAAGAAGTTGAGCGCCCTACGACTCA
CGTCTATCCTTGCGAATTGTGTGGGCGCAGCTTCAATCAACGCGCCCTCT
CGGTGCACTCTCGTGTGTGTCAGAAAGTATTCATTTCGACCCGTCCTAGG
TTTGACTCGCGACAGCGACGGACTCAAGGAACGGAAGCAGAAAAATATGT
GAAGCAGCAGCTGATGCGCCCTCTTGTGAACAGACGGTTGGGAGGAGTGG
GAGGAGGGACGGGTAGTGCTGCTGCTGTGAGTGGTAGCACGGAAAATCAA
AGAATGATGAAAAAAAGGACGGCAGCCTCCGCAGGGACAGCCTGGTCACA
GTCACAAGCTGCATCTGTCGCTTGTCTGGCGCGTTGTCGCCAGAGAGAGG
AGCAGCAGCAGGAGAAGAAAGAGGTGGATCGGACGGACATAGCCACACTC
GCAGCCACGCGCAGACCACTGCCGCAGAAACAGGTCAAAAGACAATATAT
CACGGGCACCACATTTTCATCCCTCCCCTCCGTTTCCCTCGACTCCACTG
CTGCCGCCATCCCTGCCGCCGAAGATGGCAAGAAATGGCTCCAGCAATCC
CAAGGCTTCCGGGCCATGCTCAAGGCAAACCGTCGCGTCGCGCAAGCCGA
GAAGGAGGGCCGTCCAGTTAGCCCCACTCTCCTTGCAGCTCTCTCATCAT
CCGCCGCTGCTGCATCTGGGATGCAGTCACAGAGCTTGGTCCCTTGCCCG
CATTGCCTACGAAAATACAATGAGCAGGCTGCCGCACGACATATCCCCAA
GTGCAAAGACATCAGGGCCAAGCCTAGTCGGTTACACAAGGGACAAGGAA
TGCTGTTGGGAGCCCGGCATCGTGTGGTCAAGGAGAGTTGGGGGGGAAGG
GTGGTCGGTGGAAGGTTTGATGCAGGGGGAGGTTCTGCGGAAACGCGGGG
AGGCAGAGGTGGGCGACGAGGATGACTTTGAAGTAGACATGTAAGAAGCT
A
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protein sequence of jgi.p|Nanoce1779_2|592833

>mRNA_5524-protein ID=mRNA_5524-protein|Name=jgi.p|Nanoce1779_2|592833|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MRPLVNRRLGGVGGGTGSAAAVSGSTENQRMMKKRTAASAGTAWSQSQAA
SVACLARCRQREEQQQEKKEVDRTDIATLAATRRPLPQKQVKRQYITGTT
FSSLPSVSLDSTAAAIPAAEDGKKWLQQSQGFRAMLKANRRVAQAEKEGR
PVSPTLLAALSSSAAAASGMQSQSLVPCPHCLRKYNEQAAARHIPKCKDI
RAKPSRLHKGQGMLLGARHRVVKESWGGRVVGGRFDAGGGSAETRGGRGG
RRG*
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mRNA from alignment at scaffold_13:628789..630039+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5524 ID=mRNA_5524|Name=jgi.p|Nanoce1779_2|592833|organism=Nannochloropsis oceanica|type=mRNA|length=1251bp|location=Sequence derived from alignment at scaffold_13:628789..630039+ (Nannochloropsis oceanica)
GCCAATCCACTCTTTGCCTCCTTCTTATTTCTCATCCTCATCGCCATCCT TCAATGCCACGTGCTGGTACAGTAAGGGTGATGTGGAAGCGGAGGAGAAA GCGGAAAGGGAGCAAAAGCTGAAGGAGAAGAAGGAGGACGAGGACGAAGA CTACTTCGACGCCCTCTCTCCCTCCAGCACCAGTAGCTCCCCCCATGAGG ACAATCCGCGCCCGAAGCAGCACCAGCATTGGCAGCAAGAGCACCAGGAC AATGACACCACCTTTTCGACTGGAGAAGAAGTTGAGCGCCCTACGACTCA CGTCTATCCTTGCGAATTGTGTGGGCGCAGCTTCAATCAACGCGCCCTCT CGGTGCACTCTCGTGTGTGTCAGAAAGTATTCATTTCGACCCGTCCTAGG TTTGACTCGCGACAGCGACGGACTCAAGGAACGGAAGCAGAAAAATATGT GAAGCAGCAGCTGATGCGCCCTCTTGTGAACAGACGGTTGGGAGGAGTGG GAGGAGGGACGGGTAGTGCTGCTGCTGTGAGTGGTAGCACGGAAAATCAA AGAATGATGAAAAAAAGGACGGCAGCCTCCGCAGGGACAGCCTGGTCACA GTCACAAGCTGCATCTGTCGCTTGTCTGGCGCGTTGTCGCCAGAGAGAGG AGCAGCAGCAGGAGAAGAAAGAGGTGGATCGGACGGACATAGCCACACTC GCAGCCACGCGCAGACCACTGCCGCAGAAACAGGTCAAAAGACAATATAT CACGGGCACCACATTTTCATCCCTCCCCTCCGTTTCCCTCGACTCCACTG CTGCCGCCATCCCTGCCGCCGAAGATGGCAAGAAATGGCTCCAGCAATCC CAAGGCTTCCGGGCCATGCTCAAGGCAAACCGTCGCGTCGCGCAAGCCGA GAAGGAGGGCCGTCCAGTTAGCCCCACTCTCCTTGCAGCTCTCTCATCAT CCGCCGCTGCTGCATCTGGGATGCAGTCACAGAGCTTGGTCCCTTGCCCG CATTGCCTACGAAAATACAATGAGCAGGCTGCCGCACGACATATCCCCAA GTGCAAAGACATCAGGGCCAAGCCTAGTCGGTTACACAAGGGACAAGGAA TGCTGTTGGGAGCCCGGCATCGTGTGGTCAAGGAGAGTTGGGGGGGAAGG GTGGTCGGTGGAAGGTTTGATGCAGGGGGAGGTTCTGCGGAAACGCGGGG AGGCAGAGGTGGGCGACGAGGATGACTTTGAAGTAGACATGTAAGAAGCT A
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Coding sequence (CDS) from alignment at scaffold_13:628789..630039+

>mRNA_5524 ID=mRNA_5524|Name=jgi.p|Nanoce1779_2|592833|organism=Nannochloropsis oceanica|type=CDS|length=762bp|location=Sequence derived from alignment at scaffold_13:628789..630039+ (Nannochloropsis oceanica)
ATGCGCCCTCTTGTGAACAGACGGTTGGGAGGAGTGGGAGGAGGGACGGG
TAGTGCTGCTGCTGTGAGTGGTAGCACGGAAAATCAAAGAATGATGAAAA
AAAGGACGGCAGCCTCCGCAGGGACAGCCTGGTCACAGTCACAAGCTGCA
TCTGTCGCTTGTCTGGCGCGTTGTCGCCAGAGAGAGGAGCAGCAGCAGGA
GAAGAAAGAGGTGGATCGGACGGACATAGCCACACTCGCAGCCACGCGCA
GACCACTGCCGCAGAAACAGGTCAAAAGACAATATATCACGGGCACCACA
TTTTCATCCCTCCCCTCCGTTTCCCTCGACTCCACTGCTGCCGCCATCCC
TGCCGCCGAAGATGGCAAGAAATGGCTCCAGCAATCCCAAGGCTTCCGGG
CCATGCTCAAGGCAAACCGTCGCGTCGCGCAAGCCGAGAAGGAGGGCCGT
CCAGTTAGCCCCACTCTCCTTGCAGCTCTCTCATCATCCGCCGCTGCTGC
ATCTGGGATGCAGTCACAGAGCTTGGTCCCTTGCCCGCATTGCCTACGAA
AATACAATGAGCAGGCTGCCGCACGACATATCCCCAAGTGCAAAGACATC
AGGGCCAAGCCTAGTCGGTTACACAAGGGACAAGGAATGCTGTTGGGAGC
CCGGCATCGTGTGGTCAAGGAGAGTTGGGGGGGAAGGGTGGTCGGTGGAA
GGTTTGATGCAGGGGGAGGTTCTGCGGAAACGCGGGGAGGCAGAGGTGGG
CGACGAGGATGA
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Synonyms
Publications