jgi.p|Nanoce1779_2|592824, mRNA_5523 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592824
Unique NamemRNA_5523
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length594
Alignment locationscaffold_13:625909..626770 +

Link to JBrowse

Properties
Property NameValue
TranscriptId592910
TrackFilteredModels2
ProteinId592824
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:625909..626770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592824gene_5523Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592824mRNA_5523-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5523CDS_5523Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5523 ID=mRNA_5523|Name=jgi.p|Nanoce1779_2|592824|organism=Nannochloropsis oceanica|type=mRNA|length=594bp
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGTTCATGTTGCTGCCGCCGCCTCTGCTGCTGCT
GCTGCTGCTGCTGCGATGCTTGCTGTGCTTGTTGTGCGGCTGCCATGTCC
ATCAAGGCCAGGCCTCGCTGGGGGTCCGCATCCAATTCCGCCCAGAGGCC
CGGGCTCATGTACACGCGTTGGCGCTTGCAGTACTCTGCATAGCTCGCAT
CCTGCCCCGACATGTCAGCCCCCGTCCCACTGCCGCCGGCCCCCGCTTTG
CCGTCTTCTCCACCCGTCGTGTACTGCATGACTTGAAAGGGCGGGGAGTG
GGTCAATGGCGCTGCCATGCTTCCGTCACTTGCTAACACTGCCGCTGTTC
GCGCTCCTCGTGCTTGCTCTGATGTGCTTGTCTTACAAACAATATGGTTT
TATGCCTGCAAATCGTGATGCCCCACTGTTCTAAATTTGGTAGTGGTGGA
GTTGTCCTTCTTGGGTTGTGATGCGCATCATCCAGATGGCATCCTCCAGA
GCATGGCAGGCCGGTCGGGGACGCTTTCCTACACCTCTCCCTGT
back to top

protein sequence of jgi.p|Nanoce1779_2|592824

>mRNA_5523-protein ID=mRNA_5523-protein|Name=jgi.p|Nanoce1779_2|592824|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MLLPPPLLLLLLLLRCLLCLLCGCHVHQGQASLGVRIQFRPEARAHVHAL
ALAVLCIARILPRHVSPRPTAAGPRFAVFSTRRVLHDLKGRGVGQWRCHA
SVTC*
back to top

mRNA from alignment at scaffold_13:625909..626770+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5523 ID=mRNA_5523|Name=jgi.p|Nanoce1779_2|592824|organism=Nannochloropsis oceanica|type=mRNA|length=862bp|location=Sequence derived from alignment at scaffold_13:625909..626770+ (Nannochloropsis oceanica)
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGTTCATGTTGCTGCCGCCGCCTCTGCTGCTGCT
GCTGCTGCTGCTGCGATGCTTGCTGTGCTTGTTGTGCGGCTGCCATGTCC
ATCAAGGCCAGGCCTCGCTGGGGGTCCGCATCCAATTCCGCCCAGAGGCC
CGGGCTCATGTACACGCGTTGGCGCTTGCAGTACTCTACAGATTCGTCAG
AGAGTTGGGAGACAGGGGGAGGAAAAGGAGAGAGGGGGGGAAATAGCAAA
TGAGGAACCGAACGAGAGATTGTACGATGTTGGTAGCTAGAGATCCTTCC
GTTCCCGCGAGATCGCCGGAGACTCAAGGGCGGGGGACGTGGGACATTCA
CAGACAAACACGTGTCTCCCTCTCACGCTACTTGCTGCATGACCAAGCGC
TGGCATCCTCCTCTCCCGGTCCGCCCGACCAATGGATGGATGCATGCACA
TACCTGCATAGCTCGCATCCTGCCCCGACATGTCAGCCCCCGTCCCACTG
CCGCCGGCCCCCGCTTTGCCGTCTTCTCCACCCGTCGTGTACTGCATGAC
TTGAAAGGGCGGGGAGTGGGTCAATGGCGCTGCCATGCTTCCGTCACTTG
CTAACACTGCCGCTGTTCGCGCTCCTCGTGCTTGCTCTGATGTGCTTGTC
TTACAAACAATATGGTTTTATGCCTGCAAATCGTGATGCCCCACTGTTCT
AAATTTGGTAGTGGTGGAGTTGTCCTTCTTGGGTTGTGATGCGCATCATC
CAGATGGCATCCTCCAGAGCATGGCAGGCCGGTCGGGGACGCTTTCCTAC
ACCTCTCCCTGT
back to top

Coding sequence (CDS) from alignment at scaffold_13:625909..626770+

>mRNA_5523 ID=mRNA_5523|Name=jgi.p|Nanoce1779_2|592824|organism=Nannochloropsis oceanica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_13:625909..626770+ (Nannochloropsis oceanica)
ATGTTGCTGCCGCCGCCTCTGCTGCTGCTGCTGCTGCTGCTGCGATGCTT
GCTGTGCTTGTTGTGCGGCTGCCATGTCCATCAAGGCCAGGCCTCGCTGG
GGGTCCGCATCCAATTCCGCCCAGAGGCCCGGGCTCATGTACACGCGTTG
GCGCTTGCAGTACTCTGCATAGCTCGCATCCTGCCCCGACATGTCAGCCC
CCGTCCCACTGCCGCCGGCCCCCGCTTTGCCGTCTTCTCCACCCGTCGTG
TACTGCATGACTTGAAAGGGCGGGGAGTGGGTCAATGGCGCTGCCATGCT
TCCGTCACTTGCTAAATGTTGCTGCCGCCGCCTCTGCTGCTGCTGCTGCT
GCTGCTGCGATGCTTGCTGTGCTTGTTGTGCGGCTGCCATGTCCATCAAG
GCCAGGCCTCGCTGGGGGTCCGCATCCAATTCCGCCCAGAGGCCCGGGCT
CATGTACACGCGTTGGCGCTTGCAGTACTCTGCATAGCTCGCATCCTGCC
CCGACATGTCAGCCCCCGTCCCACTGCCGCCGGCCCCCGCTTTGCCGTCT
TCTCCACCCGTCGTGTACTGCATGACTTGAAAGGGCGGGGAGTGGGTCAA
TGGCGCTGCCATGCTTCCGTCACTTGCTAA
back to top
Synonyms
Publications