jgi.p|Nanoce1779_2|69519, mRNA_5521 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|69519
Unique NamemRNA_5521
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length872
Alignment locationscaffold_13:623085..623989 -

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Properties
Property NameValue
TranscriptId69605
TrackFilteredModels2
ProteinId69519
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:623085..623989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|69519gene_5521Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|69519mRNA_5521-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5521CDS_5521Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5521 ID=mRNA_5521|Name=jgi.p|Nanoce1779_2|69519|organism=Nannochloropsis oceanica|type=mRNA|length=872bp
AGGTTTACCGCAAAGTCCTCACTGTTGTCCTGGTAGGGTACGAAGAGTAT
TGTCTTGGCCGTGTTTTCCACGCCCATACCCGTGCTAAGGGAGTGGGGAA
TGTGGGGAGAAGGTTGGAGACACTGTCATTAAGTCATTAATTACCCTGAG
AGGACCCCACCACCACCGCCATAACTCTTTTGATGAGTTTATCGTCGTTG
TCTTATTTGAGTAGCAGAGCCCTTTTCCCTCTCCTCTGGCAGGAGGTTGC
AGGTAGAAAAAAGAAAAGAAAAGAGGGTGACGATGATGTATGAAAAGAAA
TGCGAATTGAAGATCAGAGAAGAGGACAGTGACGATGATGAAAGAGTGAA
GGTGACGACGAATGAGAGGAAGAAGAACAGCAATAGGAAAAAGTTGTGCG
TGAAAAAAAAAGGTCCAGGAAGAGGAGGAGGAGGAGGGGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAAGACGGGATGAAATAGGAGACACGAAATC
GGAAATAATGTGGGGCGCTGGGACATGGACAAGGAGGAAAACCTCACATC
AATTGTGGCCGATCGATCACCTTTCAACAACAACAGCGACAAAAGCAATC
GCAGCAACAATAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AACAGCAGCAATAGCAAGGAAAGACGACACATTTCCTGAAAACACATTTC
GCTCTCTCCGGCCAACTCCCCATACAACCTGCAGGCACTGGGGGGGGGGG
ATCGATCACACAGAGCGGAAAATAGGAAACAGAAAGGGAGCGAAGTAGCG
AAGCGAACAATGCACTGTCCGCGTGCGAGAGAAAACTCAATAGAAACCGA
GACACAGCCGTCACCGATGGAG
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protein sequence of jgi.p|Nanoce1779_2|69519

>mRNA_5521-protein ID=mRNA_5521-protein|Name=jgi.p|Nanoce1779_2|69519|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MMYEKKCELKIREEDSDDDERVKVTTNERKKNSNRKKLCVKKKGPGRGGG
GGGGGGGGGGGGGRRDEIGDTKSEIMWGAGTWTRRKTSHQLWPIDHLSTT
TATKAIAATIAAAAAAAAAAAAATAAIARKDDTFPENTFRSLRPTPHTTC
RHWGGGIDHTERKIGNRKGAK*
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mRNA from alignment at scaffold_13:623085..623989-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5521 ID=mRNA_5521|Name=jgi.p|Nanoce1779_2|69519|organism=Nannochloropsis oceanica|type=mRNA|length=905bp|location=Sequence derived from alignment at scaffold_13:623085..623989- (Nannochloropsis oceanica)
AGGTTTACCGCAAAGTCCTCACTGTTGTCCTGGTAGGGTACGAAGAGTAT
TGTCTTGGCCGTGTTTTCCACGCCCATACCCGTGCTAAGGGAGTGGGGAA
TGTGGGGAGAAGGTTGGAGACACTGTCATTAAGTCATTAATTACCCTGAG
AGGACCCCACCACCACCGCCATAACTCTTTTGATGAGTTTATCGTCGTTG
TCTTATTTGAGTAGCAGAGCCCTTTTCCCTCTCCTCTGGCAGGAGGTTGC
AGGTAGAAAAAAGAAAAGAAAAGAGGGTGACGATGATGTATGAAAAGAAA
TGCGAATTGAAGATCAGAGAAGAGGACAGTGACGATGATGAAAGAGTGAA
GGTGACGACGAATGAGAGGAAGAAGAACAGCAATAGGAAAAAGTTGTGCG
TGAAAAAAAAAGGTCCAGGAAGAGGAGGAGGAGGAGGGGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAAGACGGGATGAAATAGGAGACACGAAATC
GGAAATAATGTGGGGCGCTGGGACATGGACAAGGAGGAAGTGTAGGGAGA
GGAAGGGGAGAAGGGGGAGGAGAACCTCACATCAATTGTGGCCGATCGAT
CACCTTTCAACAACAACAGCGACAAAAGCAATCGCAGCAACAATAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAATAGCAA
GGAAAGACGACACATTTCCTGAAAACACATTTCGCTCTCTCCGGCCAACT
CCCCATACAACCTGCAGGCACTGGGGGGGGGGGATCGATCACACAGAGCG
GAAAATAGGAAACAGAAAGGGAGCGAAGTAGCGAAGCGAACAATGCACTG
TCCGCGTGCGAGAGAAAACTCAATAGAAACCGAGACACAGCCGTCACCGA
TGGAG
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Coding sequence (CDS) from alignment at scaffold_13:623085..623989-

>mRNA_5521 ID=mRNA_5521|Name=jgi.p|Nanoce1779_2|69519|organism=Nannochloropsis oceanica|type=CDS|length=1032bp|location=Sequence derived from alignment at scaffold_13:623085..623989- (Nannochloropsis oceanica)
AACCTCACATCAATTGTGGCCGATCGATCACCTTTCAACAACAACAGCGA
CAAAAGCAATCGCAGCAACAATAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAACAGCAGCAATAGCAAGGAAAGACGACACATTTCCTGA
AAACACATTTCGCTCTCTCCGGCCAACTCCCCATACAACCTGCAGGCACT
GGGGGGGGGGGATCGATCACACAGAGCGGAAAATAGGAAACAGAAAGGGA
GCGAAGTAGATGATGTATGAAAAGAAATGCGAATTGAAGATCAGAGAAGA
GGACAGTGACGATGATGAAAGAGTGAAGGTGACGACGAATGAGAGGAAGA
AGAACAGCAATAGGAAAAAGTTGTGCGTGAAAAAAAAAGGTCCAGGAAGA
GGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAG
ACGGGATGAAATAGGAGACACGAAATCGGAAATAATGTGGGGCGCTGGGA
CATGGACAAGGAGGAAAACCTCACATCAATTGTGGCCGATCGATCACCTT
TCAACAACAACAGCGACAAAAGCAATCGCAGCAACAATAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAATAGCAAGGAAAG
ACGACACATTTCCTGAAAACACATTTCGCTCTCTCCGGCCAACTCCCCAT
ACAACCTGCAGGCACTGGGGGGGGGGGATCGATCACACAGAGCGGAAAAT
AGGAAACAGAAAGGGAGCGAAGTAGATGATGTATGAAAAGAAATGCGAAT
TGAAGATCAGAGAAGAGGACAGTGACGATGATGAAAGAGTGAAGGTGACG
ACGAATGAGAGGAAGAAGAACAGCAATAGGAAAAAGTTGTGCGTGAAAAA
AAAAGGTCCAGGAAGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAAGACGGGATGAAATAGGAGACACGAAATCGGAAATA
ATGTGGGGCGCTGGGACATGGACAAGGAGGAA
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Synonyms
Publications