jgi.p|Nanoce1779_2|577673, mRNA_552 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577673
Unique Name	mRNA_552
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1456
Alignment location	scaffold_3:1336311..1338071 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577759
Track	FilteredModels2
ProteinId	577673

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1336311..1338071 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577673	gene_552	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577673	mRNA_552-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_552	CDS_552	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1336311..1338071+
coding sequence from alignment at scaffold_3:1336311..1338071+

mRNA sequence

>mRNA_552 ID=mRNA_552|Name=jgi.p|Nanoce1779_2|577673|organism=Nannochloropsis oceanica|type=mRNA|length=1456bp
ACAGAGTCAGCAGTATGCCGAGCAGCAGAGGCACCTTCTTGACCAGTGCT
TTGGTCGCCGCCCTCCTCCCCTCCTTTGGTAGCGCTTTCCTCTTTGCCTC
TCCCGCCGCCGCACGCTGCAGCAGTATCACCCAAAGCTCCAGCCGCGCCA
CCAGGCCGACCCGCCTGGCAGCTGCCGCGCCCACCACCAGCAACGCCGTC
GATCAGCTTATGGGCTTCTTCAACACCAAGGGTGGCAGTGGCACAGGCCT
GGCAATGGGTGGGAAGAAAGAGTACACCGTCGTCATCACGGGAGCCTCGG
GTATGATCGGCCGAGCGCTGACCCAGTCCTTGCAAGCCGGCACAGTCGGG
GGAAAGCCCGTGAAGGTCGTGGAAATCTCGCGACGCAGCGGGGCTACGTC
CTGGGATCCGGCCACGGGTGCGATAAACGCTCAGGCTTTGGAAGGGGCGG
ATGCGGTGGTGCATCTTGCCGGAGAAAATGTCGGATCTGGGTCAAGCGAG
TCCTTGACAGGGCGATTGGGCGCGTGGACGGACGCCAAGAAGGATCGGAT
TTTGAACAGTCGAAGGGACGGGACGTCGTTGTTGGTTAAGACGATTGGGG
GATTGAAATCTCCACCCAAGGTGTTTATCACGGCAAGCGCGGTTGGCTAT
TATGGTTTTGATGAGGGGGACACTGTCTTCGACGAGAGTGGGCCGTTGGG
CAAGGGTTTCCTGGCAGAGGTGACGAGGGTTTGGGAAGCGGAAGCAGCGA
AGTTGCAGGGGAAGAGGGGCATTCGTGTGGTGAATGCTCGGTTTGGCGTG
GTCCTGAGTAAGGAGGGAGGGATTATCAAGAAACTCTTGCCTATCTTTCA
GCTCGGCGGGGGAGGGGTGATTGGTAATGGGCAGCAGTACCTTTCCTGGG
TTAGCTTGACGGATGCTGTGCGTGCGATTCAATTTCTGTTGGAAGCACCG
AAGTTGTCAGGGCCTGTGAATGTGGTGGCGCCTGAGCCGGTGACAAATGC
CGAATTCACCTCTGCGATGGGCAAGGCGTTGTTTCGACCGACGATTTTGC
CTTTCCCTGCGCCGGCCGCCCAGGTTCTTTTTGGCGAGATGGGGAACGAA
ATGCTCTTGGGAGGACAACGGGCAGTTCCCAAGAAATTGACCGCTGCGGG
CTTTTCCTTCGAAAACCCCGACATTTTGTCCGGCGTACAGAGTGCGTTGA
AAAAATAAATCTGGTTGACAACTGAAAGCGAAGGAGAGGATTTCTGAGTT
GTTGGTCTGCATGGGTGAGTGTGAGTGAGTGAGTGTATGTGTGTGTGAGT
GTTTAGAGTGACCTAGAGATACCCCCAGTAGAAGAAGGGAAGGAAAAATG
AATTCAAAAAAGCGCACACACAGGGCTTTGTGTGCGTCATCGGAGTGGTT
ATCGATCGTGTATTCAGAACAGGAACGAATGAAGAAATATTTTTTTCGTT
CTCTTA

protein sequence of jgi.p|Nanoce1779_2|577673

>mRNA_552-protein ID=mRNA_552-protein|Name=jgi.p|Nanoce1779_2|577673|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MPSSRGTFLTSALVAALLPSFGSAFLFASPAAARCSSITQSSSRATRPTR
LAAAAPTTSNAVDQLMGFFNTKGGSGTGLAMGGKKEYTVVITGASGMIGR
ALTQSLQAGTVGGKPVKVVEISRRSGATSWDPATGAINAQALEGADAVVH
LAGENVGSGSSESLTGRLGAWTDAKKDRILNSRRDGTSLLVKTIGGLKSP
PKVFITASAVGYYGFDEGDTVFDESGPLGKGFLAEVTRVWEAEAAKLQGK
RGIRVVNARFGVVLSKEGGIIKKLLPIFQLGGGGVIGNGQQYLSWVSLTD
AVRAIQFLLEAPKLSGPVNVVAPEPVTNAEFTSAMGKALFRPTILPFPAP
AAQVLFGEMGNEMLLGGQRAVPKKLTAAGFSFENPDILSGVQSALKK*

mRNA from alignment at scaffold_3:1336311..1338071+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_552 ID=mRNA_552|Name=jgi.p|Nanoce1779_2|577673|organism=Nannochloropsis oceanica|type=mRNA|length=1761bp|location=Sequence derived from alignment at scaffold_3:1336311..1338071+ (Nannochloropsis oceanica)
ACAGAGTCAGCAGTATGCCGAGCAGCAGAGGCACCTTCTTGACCAGTGCT
TTGGTCGCCGCCCTCCTCCCCTCCTTTGGTAGCGCTTTCCTCTTTGCCTC
TCCCGCCGCCGCACGCTGCAGCAGGTAAATAAACGGACGGGGCGCCTCCC
CAAGAGCATTCTAGCGACTCATCTCGTTTGCTCCTTTTTCCTCCCTAAAG
TGTCCCGAACCTGCCTCTCAAAAGTCGTTCCTCCTTCTTTCTATCGGTCA
TCTTGTTGATTTGGTTCTACTTTATTTTCGGTATATCTTATCTGAGCACT
CTGCCCATCCTTCTCCTTCCTCCTGTGCTACCAGTATCACCCAAAGCTCC
AGCCGCGCCACCAGGCCGACCCGCCTGGCAGCTGCCGCGCCCACCACCAG
CAACGCCGTCGATCAGCTTATGGGCTTCTTCAACACCAAGGGTGGCAGTG
GCACAGGCCTGGCAATGGGTGGGAAGAAAGAGTACACCGTCGTCATCACG
GGAGCCTCGGGTATGATCGGCCGAGCGCTGACCCAGTCCTTGCAAGCCGG
CACAGTCGGGGGAAAGCCCGTGAAGGTCGTGGAAATCTCGCGACGCAGCG
GGGCTACGTCCTGGGATCCGGCCACGGGTGCGATAAACGCTCAGGCTTTG
GAAGGGGCGGATGCGGTGGTGCATCTTGCCGGAGAAAATGTCGGATCTGG
GTCAAGCGAGTCCTTGACAGGGCGATTGGGCGCGTGGACGGACGCCAAGA
AGGATCGGATTTTGAACAGTCGAAGGGACGGGACGTCGTTGTTGGTTAAG
ACGATTGGGGGATTGAAATCTCCACCCAAGGTGTTTATCACGGCAAGCGC
GGTTGGCTATTATGGTTTTGATGAGGGGGACACTGTCTTCGACGAGAGTG
GGCCGTTGGGCAAGGGTTTCCTGGCAGAGGTGACGAGGGTTTGGGAAGCG
GAAGCAGCGAAGTTGCAGGGGAAGAGGGGCATTCGTGTGGTGAATGCTCG
GTTTGGCGTGGTCCTGAGTAAGGAGGGAGGGATTATCAAGAAACTCTTGC
CTATCTTTCAGCTCGGCGGGGGAGGGGTGATTGGTAATGGGCAGCAGTAC
CTTTCCTGGGTTAGCTTGACGGATGCTGTGCGTGCGATTCAATTTCTGTT
GGAAGCACCGAAGTTGTCAGGGCCTGTGAATGTGGTGGCGCCTGAGCCGG
TGACAAATGCCGAATTCACCTCTGCGATGGGCAAGGCGTTGTTTCGACCG
ACGGTAGGTACACAGGAGGGAAGGACGGGGGAGGGTATTGTACGAGCTTT
GCTGGTAATCATGAAATTCATTTTTTTTCCAATTTCTAATATTTTCAGAT
TTTGCCTTTCCCTGCGCCGGCCGCCCAGGTTCTTTTTGGCGAGATGGGGA
ACGAAATGCTCTTGGGAGGACAACGGGCAGTTCCCAAGAAATTGACCGCT
GCGGGCTTTTCCTTCGAAAACCCCGACATTTTGTCCGGCGTACAGAGTGC
GTTGAAAAAATAAATCTGGTTGACAACTGAAAGCGAAGGAGAGGATTTCT
GAGTTGTTGGTCTGCATGGGTGAGTGTGAGTGAGTGAGTGTATGTGTGTG
TGAGTGTTTAGAGTGACCTAGAGATACCCCCAGTAGAAGAAGGGAAGGAA
AAATGAATTCAAAAAAGCGCACACACAGGGCTTTGTGTGCGTCATCGGAG
TGGTTATCGATCGTGTATTCAGAACAGGAACGAATGAAGAAATATTTTTT
TCGTTCTCTTA

Coding sequence (CDS) from alignment at scaffold_3:1336311..1338071+

>mRNA_552 ID=mRNA_552|Name=jgi.p|Nanoce1779_2|577673|organism=Nannochloropsis oceanica|type=CDS|length=3582bp|location=Sequence derived from alignment at scaffold_3:1336311..1338071+ (Nannochloropsis oceanica)
ATGCCGAGCAGCAGAGGCACCTTCTTGACCAGTGCTTTGGTCGCCGCCCT
CCTCCCCTCCTTTGGTAGCGCTTTCCTCTTTGCCTCTCCCGCCGCCGCAC
GCTGCAGCAGTATCACCCAAAGCTCCAGCCGCGCCACCAGGCCGACCCGC
CTGGCAGCTGCCGCGCCCACCACCAGCAACGCCGTCGATCAGCTTATGGG
CTTCTTCAACACCAAGGGTGGCAGTGGCACAGGCCTGGCAATGGGTGGGA
AGAAAGAGTACACCGTCGTCATCACGGGAGCCTCGGGTATGATCGGCCGA
GCGCTGACCCAGTCCTTGCAAGCCGGCACAGTCGGGGGAAAGCCCGTGAA
GGTCGTGGAAATCTCGCGACGCAGCGGGGCTACGTCCTGGGATCCGGCCA
CGGGTGCGATAAACGCTCAGGCTTTGGAAGGGGCGGATGCGGTGGTGCAT
CTTGCCGGAGAAAATGTCGGATCTGGGTCAAGCGAGTCCTTGACAGGGCG
ATTGGGCGCGTGGACGGACGCCAAGAAGGATCGGATTTTGAACAGTCGAA
GGGACGGGACGTCGTTGTTGGTTAAGACGATTGGGGGATTGAAATCTCCA
CCCAAGGTGTTTATCACGGCAAGCGCGGTTGGCTATTATGGTTTTGATGA
GGGGGACACTGTCTTCGACGAGAGTGGGCCGTTGGGCAAGGGTTTCCTGG
CAGAGGTGACGAGGGTTTGGGAAGCGGAAGCAGCGAAGTTGCAGGGGAAG
AGGGGCATTCGTGTGGTGAATGCTCGGTTTGGCGTGGTCCTGAGTAAGGA
GGGAGGGATTATCAAGAAACTCTTGCCTATCTTTCAGCTCGGCGGGGGAG
GGGTGATTGGTAATGGGCAGCAGTACCTTTCCTGGGTTAGCTTGACGGAT
GCTGTGCGTGCGATTCAATTTCTGTTGGAAGCACCGAAGTTGTCAGGGCC
TGTGAATGTGGTGGCGCCTGAGCCGGTGACAAATGCCGAATTCACCTCTG
CGATGGGCAAGGCGTTGTTTCGACCGACGATTTTGCCTTTCCCTGCGCCG
GCCGCCCAGGTTCTTTTTGGCGAGATGGGGAACGAAATGCTCTTGGGAGG
ACAACGGGCAGTTCCCAAGAAATTGACCGCTGCGGGCTTTTCCTTCGAAA
ACCCCGACATTTTGTCCGGCGTACAGAGTGCGTTGAAAAAATAAATGCCG
AGCAGCAGAGGCACCTTCTTGACCAGTGCTTTGGTCGCCGCCCTCCTCCC
CTCCTTTGGTAGCGCTTTCCTCTTTGCCTCTCCCGCCGCCGCACGCTGCA
GCAGTATCACCCAAAGCTCCAGCCGCGCCACCAGGCCGACCCGCCTGGCA
GCTGCCGCGCCCACCACCAGCAACGCCGTCGATCAGCTTATGGGCTTCTT
CAACACCAAGGGTGGCAGTGGCACAGGCCTGGCAATGGGTGGGAAGAAAG
AGTACACCGTCGTCATCACGGGAGCCTCGGGTATGATCGGCCGAGCGCTG
ACCCAGTCCTTGCAAGCCGGCACAGTCGGGGGAAAGCCCGTGAAGGTCGT
GGAAATCTCGCGACGCAGCGGGGCTACGTCCTGGGATCCGGCCACGGGTG
CGATAAACGCTCAGGCTTTGGAAGGGGCGGATGCGGTGGTGCATCTTGCC
GGAGAAAATGTCGGATCTGGGTCAAGCGAGTCCTTGACAGGGCGATTGGG
CGCGTGGACGGACGCCAAGAAGGATCGGATTTTGAACAGTCGAAGGGACG
GGACGTCGTTGTTGGTTAAGACGATTGGGGGATTGAAATCTCCACCCAAG
GTGTTTATCACGGCAAGCGCGGTTGGCTATTATGGTTTTGATGAGGGGGA
CACTGTCTTCGACGAGAGTGGGCCGTTGGGCAAGGGTTTCCTGGCAGAGG
TGACGAGGGTTTGGGAAGCGGAAGCAGCGAAGTTGCAGGGGAAGAGGGGC
ATTCGTGTGGTGAATGCTCGGTTTGGCGTGGTCCTGAGTAAGGAGGGAGG
GATTATCAAGAAACTCTTGCCTATCTTTCAGCTCGGCGGGGGAGGGGTGA
TTGGTAATGGGCAGCAGTACCTTTCCTGGGTTAGCTTGACGGATGCTGTG
CGTGCGATTCAATTTCTGTTGGAAGCACCGAAGTTGTCAGGGCCTGTGAA
TGTGGTGGCGCCTGAGCCGGTGACAAATGCCGAATTCACCTCTGCGATGG
GCAAGGCGTTGTTTCGACCGACGATTTTGCCTTTCCCTGCGCCGGCCGCC
CAGGTTCTTTTTGGCGAGATGGGGAACGAAATGCTCTTGGGAGGACAACG
GGCAGTTCCCAAGAAATTGACCGCTGCGGGCTTTTCCTTCGAAAACCCCG
ACATTTTGTCCGGCGTACAGAGTGCGTTGAAAAAATAAATGCCGAGCAGC
AGAGGCACCTTCTTGACCAGTGCTTTGGTCGCCGCCCTCCTCCCCTCCTT
TGGTAGCGCTTTCCTCTTTGCCTCTCCCGCCGCCGCACGCTGCAGCAGTA
TCACCCAAAGCTCCAGCCGCGCCACCAGGCCGACCCGCCTGGCAGCTGCC
GCGCCCACCACCAGCAACGCCGTCGATCAGCTTATGGGCTTCTTCAACAC
CAAGGGTGGCAGTGGCACAGGCCTGGCAATGGGTGGGAAGAAAGAGTACA
CCGTCGTCATCACGGGAGCCTCGGGTATGATCGGCCGAGCGCTGACCCAG
TCCTTGCAAGCCGGCACAGTCGGGGGAAAGCCCGTGAAGGTCGTGGAAAT
CTCGCGACGCAGCGGGGCTACGTCCTGGGATCCGGCCACGGGTGCGATAA
ACGCTCAGGCTTTGGAAGGGGCGGATGCGGTGGTGCATCTTGCCGGAGAA
AATGTCGGATCTGGGTCAAGCGAGTCCTTGACAGGGCGATTGGGCGCGTG
GACGGACGCCAAGAAGGATCGGATTTTGAACAGTCGAAGGGACGGGACGT
CGTTGTTGGTTAAGACGATTGGGGGATTGAAATCTCCACCCAAGGTGTTT
ATCACGGCAAGCGCGGTTGGCTATTATGGTTTTGATGAGGGGGACACTGT
CTTCGACGAGAGTGGGCCGTTGGGCAAGGGTTTCCTGGCAGAGGTGACGA
GGGTTTGGGAAGCGGAAGCAGCGAAGTTGCAGGGGAAGAGGGGCATTCGT
GTGGTGAATGCTCGGTTTGGCGTGGTCCTGAGTAAGGAGGGAGGGATTAT
CAAGAAACTCTTGCCTATCTTTCAGCTCGGCGGGGGAGGGGTGATTGGTA
ATGGGCAGCAGTACCTTTCCTGGGTTAGCTTGACGGATGCTGTGCGTGCG
ATTCAATTTCTGTTGGAAGCACCGAAGTTGTCAGGGCCTGTGAATGTGGT
GGCGCCTGAGCCGGTGACAAATGCCGAATTCACCTCTGCGATGGGCAAGG
CGTTGTTTCGACCGACGATTTTGCCTTTCCCTGCGCCGGCCGCCCAGGTT
CTTTTTGGCGAGATGGGGAACGAAATGCTCTTGGGAGGACAACGGGCAGT
TCCCAAGAAATTGACCGCTGCGGGCTTTTCCTTCGAAAACCCCGACATTT
TGTCCGGCGTACAGAGTGCGTTGAAAAAATAA

Synonyms

Publications