jgi.p|Nanoce1779_2|639932, mRNA_5519 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|639932
Unique NamemRNA_5519
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length354
Alignment locationscaffold_13:619275..620045 -

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Properties
Property NameValue
TranscriptId640018
TrackFilteredModels2
ProteinId639932
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:619275..620045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639932gene_5519Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639932mRNA_5519-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5519CDS_5519Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5519 ID=mRNA_5519|Name=jgi.p|Nanoce1779_2|639932|organism=Nannochloropsis oceanica|type=mRNA|length=354bp
ATGTTCAGCCGCTTTGGCACCAGCTTGCTACGGCAAAGCACCAGGAGGGT
GCCCGCTGCGGTCCGTCCTACCACTGGCCGTCGCTTCCTCGGCAGCGGCG
GACACGGCCACGGCAATCATTTCCATGTTTCGGAGACGCATCAAAAAGTA
GCCACGGTCATGACAACCGTGTGTTGGGTATGGATCTTATGGAGGTGCTA
TGAGGACGGAGCTGTAGTGTTGGGGTTGAAGCACCCGTGGGACGGACATG
GAGGGCACGGGGATCACGGGCACGGTGGAGGAGCGCATTATAAGGAGACG
GAGTTTGATGCGCCGTCGGAGTTGGAGGAGGCAGAGGATGAGGAGGAGCA
TTAA
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protein sequence of jgi.p|Nanoce1779_2|639932

>mRNA_5519-protein ID=mRNA_5519-protein|Name=jgi.p|Nanoce1779_2|639932|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MFSRFGTSLLRQSTRRVPAAVRPTTGRRFLGSGGHGHGNHFHVSETHQKV
ATVMTTVCWVWILWRCYEDGAVVLGLKHPWDGHGGHGDHGHGGGAHYKET
EFDAPSELEEAEDEEEH*
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mRNA from alignment at scaffold_13:619275..620045-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5519 ID=mRNA_5519|Name=jgi.p|Nanoce1779_2|639932|organism=Nannochloropsis oceanica|type=mRNA|length=771bp|location=Sequence derived from alignment at scaffold_13:619275..620045- (Nannochloropsis oceanica)
ATGTTCAGCCGCTTTGGCACCAGCTTGCTACGGCAAAGCACCAGGAGGGT
GCCCGCTGCGGTCCGTCCTACCACTGGTAAGAACCACCCTTCCCCCTCCC
CCCTCCTTTTCTCCAATCGTCTGCCTCCTGGTGATTGTGTTTACCCTATG
CTCAACTGCAAGCTATCACTCGCTTGAAGATGATAGTATGGGGCCTGTGC
ATGCTGGCTTTCCCGTATGTTGCACCTCTTGCGCCCCTAGGTCTAATTCA
ACGCATCTCCTGTCCAACGTTCACCTTCACCTACCATAACACCATAGAGC
AAGAGAACTATATACATACATATATTTATTTATTTAACCTCTAGTCCCAA
AGAAATTCCGTCTGCTTTATATAGCCCACTTTGCCCACCCCTGGACCATA
GAGAGCCCCGTCATATTATTCTTTTCCTTCTTACTGTCGCACCCACATGT
ATCGAGTCAGTCACACCACCTCTTCCTCCATCCACATACACAGGCCGTCG
CTTCCTCGGCAGCGGCGGACACGGCCACGGCAATCATTTCCATGTTTCGG
AGACGCATCAAAAAGTAGCCACGGTCATGACAACCGTGTGTTGGGTATGG
ATCTTATGGAGGTGCTATGAGGACGGAGCTGTAGTGTTGGGGTTGAAGCA
CCCGTGGGACGGACATGGAGGGCACGGGGATCACGGGCACGGTGGAGGAG
CGCATTATAAGGAGACGGAGTTTGATGCGCCGTCGGAGTTGGAGGAGGCA
GAGGATGAGGAGGAGCATTAA
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Coding sequence (CDS) from alignment at scaffold_13:619275..620045-

>mRNA_5519 ID=mRNA_5519|Name=jgi.p|Nanoce1779_2|639932|organism=Nannochloropsis oceanica|type=CDS|length=708bp|location=Sequence derived from alignment at scaffold_13:619275..620045- (Nannochloropsis oceanica)
GCCGTCGCTTCCTCGGCAGCGGCGGACACGGCCACGGCAATCATTTCCAT
GTTTCGGAGACGCATCAAAAAGTAGCCACGGTCATGACAACCGTGTGTTG
GGTATGGATCTTATGGAGGTGCTATGAGGACGGAGCTGTAGTGTTGGGGT
TGAAGCACCCGTGGGACGGACATGGAGGGCACGGGGATCACGGGCACGGT
GGAGGAGCGCATTATAAGGAGACGGAGTTTGATGCGCCGTCGGAGTTGGA
GGAGGCAGAGGATGAGGAGGAGCATTAAATGTTCAGCCGCTTTGGCACCA
GCTTGCTACGGCAAAGCACCAGGAGGGTGCCCGCTGCGGTCCGTCCTACC
ACTGGCCGTCGCTTCCTCGGCAGCGGCGGACACGGCCACGGCAATCATTT
CCATGTTTCGGAGACGCATCAAAAAGTAGCCACGGTCATGACAACCGTGT
GTTGGGTATGGATCTTATGGAGGTGCTATGAGGACGGAGCTGTAGTGTTG
GGGTTGAAGCACCCGTGGGACGGACATGGAGGGCACGGGGATCACGGGCA
CGGTGGAGGAGCGCATTATAAGGAGACGGAGTTTGATGCGCCGTCGGAGT
TGGAGGAGGCAGAGGATGAGGAGGAGCATTAAATGTTCAGCCGCTTTGGC
ACCAGCTTGCTACGGCAAAGCACCAGGAGGGTGCCCGCTGCGGTCCGTCC
TACCACTG
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Synonyms
Publications