jgi.p|Nanoce1779_2|529270, mRNA_5518 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|529270
Unique Name	mRNA_5518
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1545
Alignment location	scaffold_13:617109..618933 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	529356
Track	FilteredModels2
ProteinId	529270

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:617109..618933 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|529270	gene_5518	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|529270	mRNA_5518-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5518	CDS_5518	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:617109..618933+
coding sequence from alignment at scaffold_13:617109..618933+

mRNA sequence

>mRNA_5518 ID=mRNA_5518|Name=jgi.p|Nanoce1779_2|529270|organism=Nannochloropsis oceanica|type=mRNA|length=1545bp
ATGAGAAGAAGACCGCCATTATCAGCACCAGTGGCGGTATCGACATCCGT
GCCGCCGCTTCCCGAACTCCGGTTCCTTCCCATTCTCCTCTTCGCCCTTC
TTCTTAGCCTCCTCACCTCACTCCCCTGCATACAAGCCCAAACCTCGTGG
GGCTCCACCTTCGATGCGACCAGCCATTTCTTCTCCTCCACCTGGGAAAG
CATCGCAACATACACCGGATTCCACGATTTCTGTCCATTCGCCACCGACT
TTTCCGAGGTGGCCCGTCGGGCAGTACACTCCAAAATCCGTTGTCAAGAC
CGAGCGGTGAATGCCATTACATCCGGCCTCAGTCACTGGGAGATGGACTT
GATGAAGGATGTGCACCGGCCCCTTGTATTGGCCTTCACGGGGCCCACGG
GCGTGGGGAAGACCGAGACCGCCCATGTGATTGCCAGGGCGATGTTGCCC
AAGACAGAATTGGTCGGGATAGGGAAACGACCTAGGGGCTTAATGGTGTT
GCGAGGGGAGGATTTTGCGGATGTGCATGCCAATGTCACCAGCTACATAG
ACACCATCAAAAGCGCACTCTTCCAGCACTTAATTAAATGCCAAGGCCAC
GCCGTCGTCATCTTTGACGAAGTCCAGAAAGTGGTCCCAGGCACGCTGGA
TGCCCTCGCCGAAGCCATCAGCGAACATCCGACCCTCACGTACTACAAGC
CCGAAGATGCGACCATCCACCGGGTGGATACTTCCCACGTGGCCTTTTTC
CTCATCAGTGACATTGGATGGGAAGACATGCTCACCCTCCTCATCGCCCA
CGGCGGGTCCGCCGCTGCCCTCCCTCCCCATCTACTGTCCCAGCGGGTCA
AGGTCGCGCTGGATGCCCAGTGGACACGGCTCAAGTTTGGGAAATTAATC
GATAAGATAGTCCCCTTCTTACCGCTTTCCCAGGCTCAAATGCGAGAGAT
ACTAGACTTGAAATTGGAAGAGATGGGCGAGGAACACCGGGGGAGGCTGT
GGGCGCGGCTAGAGACGACGGAGGGAGTGAGGGAGTACTTGGTGAAGAGT
CCTTTTGTCAAGTATGCAGGGTATGGGTTTGAGGACGAGGAGGAGGGAGG
GATGGAGGAAGGGGAGGAAGCGGGTAATGCATGCGATTCAATCCAAGGAG
GCATGTGCAAACAAGCCAAGGAAGTAGCAGAAGACAACGACGAAGAAGTA
GGAGAAGAGAAGAGGAAGAGGAAAGAGAAGAAGAGAAGGAAGGAGAAGGA
AGTGTATTGGTTCGCGGAATTCGGTGCCCGGAATCTTCAGACTGGCGGGC
CGTTGCACGCCCTGGAGAGCGCGATTGTAGAAAGCATGAAACCGTGGCGT
CCTTTGGAAGTATTGGACGTCAGGTACAACGCGCAGACGGATGAGACTGA
ATTGAGGTGGTGCCCGACCGAGGTGCGCTTCGTGGGTGAAGGTGGCAGGG
GGGGAGGGAGGGAGGTGTCGTTGTTGAGGGAGGAGGGGGGGGTGACGGGC
TGTGAGCTGAGATGGGCGGGGAACTTGAAGACGAAGATAGGGTGA

protein sequence of jgi.p|Nanoce1779_2|529270

>mRNA_5518-protein ID=mRNA_5518-protein|Name=jgi.p|Nanoce1779_2|529270|organism=Nannochloropsis oceanica|type=polypeptide|length=515bp
MRRRPPLSAPVAVSTSVPPLPELRFLPILLFALLLSLLTSLPCIQAQTSW
GSTFDATSHFFSSTWESIATYTGFHDFCPFATDFSEVARRAVHSKIRCQD
RAVNAITSGLSHWEMDLMKDVHRPLVLAFTGPTGVGKTETAHVIARAMLP
KTELVGIGKRPRGLMVLRGEDFADVHANVTSYIDTIKSALFQHLIKCQGH
AVVIFDEVQKVVPGTLDALAEAISEHPTLTYYKPEDATIHRVDTSHVAFF
LISDIGWEDMLTLLIAHGGSAAALPPHLLSQRVKVALDAQWTRLKFGKLI
DKIVPFLPLSQAQMREILDLKLEEMGEEHRGRLWARLETTEGVREYLVKS
PFVKYAGYGFEDEEEGGMEEGEEAGNACDSIQGGMCKQAKEVAEDNDEEV
GEEKRKRKEKKRRKEKEVYWFAEFGARNLQTGGPLHALESAIVESMKPWR
PLEVLDVRYNAQTDETELRWCPTEVRFVGEGGRGGGREVSLLREEGGVTG
CELRWAGNLKTKIG*

mRNA from alignment at scaffold_13:617109..618933+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5518 ID=mRNA_5518|Name=jgi.p|Nanoce1779_2|529270|organism=Nannochloropsis oceanica|type=mRNA|length=1825bp|location=Sequence derived from alignment at scaffold_13:617109..618933+ (Nannochloropsis oceanica)
ATGAGAAGAAGACCGCCATTATCAGCACCAGTGGCGGTATCGACATCCGT
GCCGCCGCTTCCCGAACTCCGGTTCCTTCCCATTCTCCTCTTCGCCCTTC
TTCTTAGCCTCCTCACCTCACTCCCCTGCATACAAGCCCAAACCTCGTGG
GGCTCCACCTTCGATGCGACCAGCCATTTCTTCTCCTCCACCTGGGAAAG
CATCGCAACATACACCGGATTCCACGATTTCTGTCCATTCGCCACCGACT
TTTCCGAGGTGGCCCGTCGGGCAGTACACTCCAAAATCCGTTGTCAAGAC
CGAGCGGTGAATGCCATTACATCCGGCCTCAGTCACTGGGAGATGGACTT
GATGAAGGATGTGCACCGGCCCCTTGTATTGGCCTTCACGGGGCCCACGG
GCGTGGGGAAGACCGAGACCGCCCATGTGATTGCCAGGGCGATGTTGCCC
AAGACAGAATTGGTCGGGATAGGGAAACGACCTAGGGGCTTAATGGTGTT
GCGAGGGGAGGATTTTGCGGATGTGCATGCCAATGTCACCAGGTAGGTAA
GATTGAAAGTGGAAAAAGGATGAGAGCTGAGGTGGTTGAAACCTTTGTCC
TGGTGCCTGCGTCGAGTGCGTCGTGGTCGTCATGGTCCTGTTCAATCCTC
CCTCCCTCCCTCCCTCCCTTCCTACCTCTTTCACGTACAGCTACATAGAC
ACCATCAAAAGCGCACTCTTCCAGCACTTAATTAAATGCCAAGGCCACGC
CGTCGTCATCTTTGACGAAGTCCAGAAAGGTACCCCCCCCCCCCTTCCTT
GCCCCCTCCCTCCCCTCCTCCTTCCCTCCACGCTTACGATGCCTCCTCCC
TTCCTCCTTCTTCCCCTCCCCCCTTCCTTGCCCCCTCCCTCCCCTCCCGA
CCTTTTAACAGTGGTCCCAGGCACGCTGGATGCCCTCGCCGAAGCCATCA
GCGAACATCCGACCCTCACGTACTACAAGCCCGAAGATGCGACCATCCAC
CGGGTGGATACTTCCCACGTGGCCTTTTTCCTCATCAGTGACATTGGATG
GGAAGACATGCTCACCCTCCTCATCGCCCACGGCGGGTCCGCCGCTGCCC
TCCCTCCCCATCTACTGTCCCAGCGGGTCAAGGTCGCGCTGGATGCCCAG
TGGACACGGCTCAAGTTTGGGAAATTAATCGATAAGATAGTCCCCTTCTT
ACCGCTTTCCCAGGCTCAAATGCGAGAGATACTAGACTTGAAATTGGAAG
AGATGGGCGAGGAACACCGGGGGAGGCTGTGGGCGCGGCTAGAGACGACG
GAGGGAGTGAGGGAGTACTTGGTGAAGAGTCCTTTTGTCAAGTATGCAGG
GTATGGGTTTGAGGACGAGGAGGAGGGAGGGATGGAGGAAGGGGAGGAAG
CGGGTAATGCATGCGATTCAATCCAAGGAGGCATGTGCAAACAAGCCAAG
GAAGTAGCAGAAGACAACGACGAAGAAGTAGGAGAAGAGAAGAGGAAGAG
GAAAGAGAAGAAGAGAAGGAAGGAGAAGGAAGTGTATTGGTTCGCGGAAT
TCGGTGCCCGGAATCTTCAGACTGGCGGGCCGTTGCACGCCCTGGAGAGC
GCGATTGTAGAAAGCATGAAACCGTGGCGTCCTTTGGAAGTATTGGACGT
CAGGTACAACGCGCAGACGGATGAGACTGAATTGAGGTGGTGCCCGACCG
AGGTGCGCTTCGTGGGTGAAGGTGGCAGGGGGGGAGGGAGGGAGGTGTCG
TTGTTGAGGGAGGAGGGGGGGGTGACGGGCTGTGAGCTGAGATGGGCGGG
GAACTTGAAGACGAAGATAGGGTGA

Coding sequence (CDS) from alignment at scaffold_13:617109..618933+

>mRNA_5518 ID=mRNA_5518|Name=jgi.p|Nanoce1779_2|529270|organism=Nannochloropsis oceanica|type=CDS|length=4635bp|location=Sequence derived from alignment at scaffold_13:617109..618933+ (Nannochloropsis oceanica)
ATGAGAAGAAGACCGCCATTATCAGCACCAGTGGCGGTATCGACATCCGT
GCCGCCGCTTCCCGAACTCCGGTTCCTTCCCATTCTCCTCTTCGCCCTTC
TTCTTAGCCTCCTCACCTCACTCCCCTGCATACAAGCCCAAACCTCGTGG
GGCTCCACCTTCGATGCGACCAGCCATTTCTTCTCCTCCACCTGGGAAAG
CATCGCAACATACACCGGATTCCACGATTTCTGTCCATTCGCCACCGACT
TTTCCGAGGTGGCCCGTCGGGCAGTACACTCCAAAATCCGTTGTCAAGAC
CGAGCGGTGAATGCCATTACATCCGGCCTCAGTCACTGGGAGATGGACTT
GATGAAGGATGTGCACCGGCCCCTTGTATTGGCCTTCACGGGGCCCACGG
GCGTGGGGAAGACCGAGACCGCCCATGTGATTGCCAGGGCGATGTTGCCC
AAGACAGAATTGGTCGGGATAGGGAAACGACCTAGGGGCTTAATGGTGTT
GCGAGGGGAGGATTTTGCGGATGTGCATGCCAATGTCACCAGCTACATAG
ACACCATCAAAAGCGCACTCTTCCAGCACTTAATTAAATGCCAAGGCCAC
GCCGTCGTCATCTTTGACGAAGTCCAGAAAGTGGTCCCAGGCACGCTGGA
TGCCCTCGCCGAAGCCATCAGCGAACATCCGACCCTCACGTACTACAAGC
CCGAAGATGCGACCATCCACCGGGTGGATACTTCCCACGTGGCCTTTTTC
CTCATCAGTGACATTGGATGGGAAGACATGCTCACCCTCCTCATCGCCCA
CGGCGGGTCCGCCGCTGCCCTCCCTCCCCATCTACTGTCCCAGCGGGTCA
AGGTCGCGCTGGATGCCCAGTGGACACGGCTCAAGTTTGGGAAATTAATC
GATAAGATAGTCCCCTTCTTACCGCTTTCCCAGGCTCAAATGCGAGAGAT
ACTAGACTTGAAATTGGAAGAGATGGGCGAGGAACACCGGGGGAGGCTGT
GGGCGCGGCTAGAGACGACGGAGGGAGTGAGGGAGTACTTGGTGAAGAGT
CCTTTTGTCAAGTATGCAGGGTATGGGTTTGAGGACGAGGAGGAGGGAGG
GATGGAGGAAGGGGAGGAAGCGGGTAATGCATGCGATTCAATCCAAGGAG
GCATGTGCAAACAAGCCAAGGAAGTAGCAGAAGACAACGACGAAGAAGTA
GGAGAAGAGAAGAGGAAGAGGAAAGAGAAGAAGAGAAGGAAGGAGAAGGA
AGTGTATTGGTTCGCGGAATTCGGTGCCCGGAATCTTCAGACTGGCGGGC
CGTTGCACGCCCTGGAGAGCGCGATTGTAGAAAGCATGAAACCGTGGCGT
CCTTTGGAAGTATTGGACGTCAGGTACAACGCGCAGACGGATGAGACTGA
ATTGAGGTGGTGCCCGACCGAGGTGCGCTTCGTGGGTGAAGGTGGCAGGG
GGGGAGGGAGGGAGGTGTCGTTGTTGAGGGAGGAGGGGGGGGTGACGGGC
TGTGAGCTGAGATGGGCGGGGAACTTGAAGACGAAGATAGGGTGAATGAG
AAGAAGACCGCCATTATCAGCACCAGTGGCGGTATCGACATCCGTGCCGC
CGCTTCCCGAACTCCGGTTCCTTCCCATTCTCCTCTTCGCCCTTCTTCTT
AGCCTCCTCACCTCACTCCCCTGCATACAAGCCCAAACCTCGTGGGGCTC
CACCTTCGATGCGACCAGCCATTTCTTCTCCTCCACCTGGGAAAGCATCG
CAACATACACCGGATTCCACGATTTCTGTCCATTCGCCACCGACTTTTCC
GAGGTGGCCCGTCGGGCAGTACACTCCAAAATCCGTTGTCAAGACCGAGC
GGTGAATGCCATTACATCCGGCCTCAGTCACTGGGAGATGGACTTGATGA
AGGATGTGCACCGGCCCCTTGTATTGGCCTTCACGGGGCCCACGGGCGTG
GGGAAGACCGAGACCGCCCATGTGATTGCCAGGGCGATGTTGCCCAAGAC
AGAATTGGTCGGGATAGGGAAACGACCTAGGGGCTTAATGGTGTTGCGAG
GGGAGGATTTTGCGGATGTGCATGCCAATGTCACCAGCTACATAGACACC
ATCAAAAGCGCACTCTTCCAGCACTTAATTAAATGCCAAGGCCACGCCGT
CGTCATCTTTGACGAAGTCCAGAAAGTGGTCCCAGGCACGCTGGATGCCC
TCGCCGAAGCCATCAGCGAACATCCGACCCTCACGTACTACAAGCCCGAA
GATGCGACCATCCACCGGGTGGATACTTCCCACGTGGCCTTTTTCCTCAT
CAGTGACATTGGATGGGAAGACATGCTCACCCTCCTCATCGCCCACGGCG
GGTCCGCCGCTGCCCTCCCTCCCCATCTACTGTCCCAGCGGGTCAAGGTC
GCGCTGGATGCCCAGTGGACACGGCTCAAGTTTGGGAAATTAATCGATAA
GATAGTCCCCTTCTTACCGCTTTCCCAGGCTCAAATGCGAGAGATACTAG
ACTTGAAATTGGAAGAGATGGGCGAGGAACACCGGGGGAGGCTGTGGGCG
CGGCTAGAGACGACGGAGGGAGTGAGGGAGTACTTGGTGAAGAGTCCTTT
TGTCAAGTATGCAGGGTATGGGTTTGAGGACGAGGAGGAGGGAGGGATGG
AGGAAGGGGAGGAAGCGGGTAATGCATGCGATTCAATCCAAGGAGGCATG
TGCAAACAAGCCAAGGAAGTAGCAGAAGACAACGACGAAGAAGTAGGAGA
AGAGAAGAGGAAGAGGAAAGAGAAGAAGAGAAGGAAGGAGAAGGAAGTGT
ATTGGTTCGCGGAATTCGGTGCCCGGAATCTTCAGACTGGCGGGCCGTTG
CACGCCCTGGAGAGCGCGATTGTAGAAAGCATGAAACCGTGGCGTCCTTT
GGAAGTATTGGACGTCAGGTACAACGCGCAGACGGATGAGACTGAATTGA
GGTGGTGCCCGACCGAGGTGCGCTTCGTGGGTGAAGGTGGCAGGGGGGGA
GGGAGGGAGGTGTCGTTGTTGAGGGAGGAGGGGGGGGTGACGGGCTGTGA
GCTGAGATGGGCGGGGAACTTGAAGACGAAGATAGGGTGAATGAGAAGAA
GACCGCCATTATCAGCACCAGTGGCGGTATCGACATCCGTGCCGCCGCTT
CCCGAACTCCGGTTCCTTCCCATTCTCCTCTTCGCCCTTCTTCTTAGCCT
CCTCACCTCACTCCCCTGCATACAAGCCCAAACCTCGTGGGGCTCCACCT
TCGATGCGACCAGCCATTTCTTCTCCTCCACCTGGGAAAGCATCGCAACA
TACACCGGATTCCACGATTTCTGTCCATTCGCCACCGACTTTTCCGAGGT
GGCCCGTCGGGCAGTACACTCCAAAATCCGTTGTCAAGACCGAGCGGTGA
ATGCCATTACATCCGGCCTCAGTCACTGGGAGATGGACTTGATGAAGGAT
GTGCACCGGCCCCTTGTATTGGCCTTCACGGGGCCCACGGGCGTGGGGAA
GACCGAGACCGCCCATGTGATTGCCAGGGCGATGTTGCCCAAGACAGAAT
TGGTCGGGATAGGGAAACGACCTAGGGGCTTAATGGTGTTGCGAGGGGAG
GATTTTGCGGATGTGCATGCCAATGTCACCAGCTACATAGACACCATCAA
AAGCGCACTCTTCCAGCACTTAATTAAATGCCAAGGCCACGCCGTCGTCA
TCTTTGACGAAGTCCAGAAAGTGGTCCCAGGCACGCTGGATGCCCTCGCC
GAAGCCATCAGCGAACATCCGACCCTCACGTACTACAAGCCCGAAGATGC
GACCATCCACCGGGTGGATACTTCCCACGTGGCCTTTTTCCTCATCAGTG
ACATTGGATGGGAAGACATGCTCACCCTCCTCATCGCCCACGGCGGGTCC
GCCGCTGCCCTCCCTCCCCATCTACTGTCCCAGCGGGTCAAGGTCGCGCT
GGATGCCCAGTGGACACGGCTCAAGTTTGGGAAATTAATCGATAAGATAG
TCCCCTTCTTACCGCTTTCCCAGGCTCAAATGCGAGAGATACTAGACTTG
AAATTGGAAGAGATGGGCGAGGAACACCGGGGGAGGCTGTGGGCGCGGCT
AGAGACGACGGAGGGAGTGAGGGAGTACTTGGTGAAGAGTCCTTTTGTCA
AGTATGCAGGGTATGGGTTTGAGGACGAGGAGGAGGGAGGGATGGAGGAA
GGGGAGGAAGCGGGTAATGCATGCGATTCAATCCAAGGAGGCATGTGCAA
ACAAGCCAAGGAAGTAGCAGAAGACAACGACGAAGAAGTAGGAGAAGAGA
AGAGGAAGAGGAAAGAGAAGAAGAGAAGGAAGGAGAAGGAAGTGTATTGG
TTCGCGGAATTCGGTGCCCGGAATCTTCAGACTGGCGGGCCGTTGCACGC
CCTGGAGAGCGCGATTGTAGAAAGCATGAAACCGTGGCGTCCTTTGGAAG
TATTGGACGTCAGGTACAACGCGCAGACGGATGAGACTGAATTGAGGTGG
TGCCCGACCGAGGTGCGCTTCGTGGGTGAAGGTGGCAGGGGGGGAGGGAG
GGAGGTGTCGTTGTTGAGGGAGGAGGGGGGGGTGACGGGCTGTGAGCTGA
GATGGGCGGGGAACTTGAAGACGAAGATAGGGTGA

Synonyms

Publications