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Properties
| Property Name | Value |
|---|
| TranscriptId | 625820 |
| Track | FilteredModels2 |
| ProteinId | 625734 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:610155..614086 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5516 ID=mRNA_5516|Name=jgi.p|Nanoce1779_2|625734|organism=Nannochloropsis oceanica|type=mRNA|length=3575bp
ACAGGCAGTTTCCTGAATCCCTTCTTTGCTGCCGTAAGAAACAAGTCGCC
AGGAAGCCAAGCCAAGCGACTCAAGCATGCCACGTAGCACCCTCGGATGG
GGCGGGGCAACGGGTGAGGAAGGCAAGAGCAATGGGAATGGGAGGCATGT
TCATGTCTCGTTTGACGATGAAAAAGCGTCCCTCTTGCGACACGGTCCCG
GCTGCAACAACAGCAAGAAAGGCCTTGTGGCCGAGGCTCGCGATGTCGAT
GAAAGTCCGAGAATTACATATGGGGGGACCTTTGCTCCCTCGGGATCCGC
ACCTCTGACGGCGGAGGAGCAGCACCACCACCGCCACCACACCCGCAGGC
CCTCAATCTCGATTGTGGATGGGTACAACAGCCCTGTGCGTCGGGGTGGG
GCACGGAACACCATGGAAATGGAAGGGGAAGCAACGGCAACGATATCCGT
GGGCAGTTCTGGTGGAAGCGGGAGTGTGAGCGGTGGTATCTTTCATCACC
ACGAGAATGCGGGGCATGGCCACAGCCACGACCATTGTGTAATTGCGAGA
CGGGAGGTGGAACAAGTGGAACACCTGAGTAATAAAGTCCGATTCGCCGT
ACATGCATCTATTTTTGCGAATGTCTTCTTGTCGGCTGTTAGCGCGTATG
CCGCAATACGTTCAGGATCTTTGGCGGTGCTGGCTTCTTTAGTGGATACC
CTCCTTGACCTTATTTCCCAAGTCGTCCTTTCCGTCGCCGAGCACCGCAT
GCGAAAGCCCTCTGATGAGCATTACCCTGCCGGGCGCTCGCGGATCGAGC
CGGTCGGTGTTATCATTGTGTCTGTCATCATGGGGGTGGCGGCGCTCGAG
TTGTTGAGGGCGTCGGTCGGAACCATGGTCATGGCGCTGGCCTATGGAAA
GCTACCTCATTTGGACATGGAACCCGTCACCATCGGGATCATGCTCGTTG
CCGTCGGTGTCAAAGTATGCCTCTACCTCTACTCAAGCACCCTGGCAGGA
ATATCCGGCACGGCCGAAGCCCTCGCGGAGGACCACAGAAACGATATCAT
GACAAATTCTTTCTCTGTCATTTCCTCTACCTTCGCGCACTACTACCCCA
AGGCCTGGGTAGTCGACCCAATCGGCGCCATCCTCATTTCCTGCCTCATT
TTCTACAATTGGCTGCATGTGGGGATGGACCATGCTAGCAAAATTGTCGG
TCTCTCTGCTCCTCCTGAGACACTTGAAACCATAACAGAGCTCGCCGGCA
ATCATCACACTCAGCTCGAGTTGGATATCATTCGTGCGTATCACTTTGGT
CCCAATTTCCTCGTTGAATTGGAGGTGGTGTTACCCAGCGAGATGAGCGT
AAAGGAGGCCCACGACATTGCGTTGGGGCTGCAGCAGAAGGTGGAAATGC
AGAGTTTTGTGGAGCGTTGTTTTGTGCATGTGGATTATCAGACGAGAGGG
TATAATGAGCATAAAATATAGGAGAGGGGGAGGGAGGGAGGAAGGGACGT
GTAAATTAGAATGGGGGAAATCGAGGAGGGAGGACAGCGAAATATGAGGA
TGCAAGGATACCACCTCGAGATGACAACAGAAGAGCAATAACAAGAATGA
GAAACAGGAGATTGGCGAAAGAATAGCGAAATGCTATACTAACAGGGCAT
TACGTCAAGCAGCTGGGGGATTGTTTCGAATGCTCCGCCGGCCTCTGTTG
TGCTTGTACGGCCACGCTGCGAGGCCAGAACCATCAGTGTTGCCATCATC
ATCAACGCTTGCTCGCGCTTTGACCTCCGTCACTGCCACTGCTAGTACCC
AGTCCTTTCATAAAATATGCACGCGGCCCTTGCCAACACCAAGGCAAAGA
TACCGCCACACCGATGCCACTGCAGTACAGCTGCGGAAGACGCTGGGTGC
GCCCATCCCCTTGAATGACCACGCCGTGTCCGTGACCATGCCCAAGTGGC
AGCACGTGGTGGGTTACGAGGAAGGCGACGCCGACGTGACCGACAAGCTT
GTGCTAGGATACCCCCGCTTTGTCTACCATCCGTTCGTGAAGCAATTGGT
TGATGTGTGGAAGGCACATGCTGTCGAGGTAGGCGCCATCGCCGCACATG
AAGTGGTTGGGGCCCTGCCCTTCCCCTCACTAGGTACAGCGGAGCGTTGC
CGTCGTTTCCTGGAAGATGCGCACGCGCACGAGCCAGGGTTTCCTGTGAA
TTTGCATCCTGTGGGTGTCATGGACACTTACATTGTCACATTCCCCTCTT
TTGCCGCAGGAGAGGCGAAGGCATACTGGCAACACAGTGGGGAAATCTTG
TCCTCGCGCAAGGCCGCGCGGGTGCTGGCGTCGTTGGGTCATCCTGTCTC
TACCTTGGTCAACGGCTTCCCATCTGCTGCCCCTCTCTCCTCCTCTACTT
CGTCCTCTACTGTAGCTGCAACGGCAGTGGGCGAGGCAAGGCCTGGGTGC
TACCGACAGGCCTTGAAGGAACGAATAAGCGCCTTGACCGGTCAACGGGA
GGAAGACGTGTACCTGACAATCAGTGGCATGGCCGCCATCTTCAAGGCAT
TCCATATATGCAAGCAAGCCCGTCCGAACCGTCGGGTGGTGGTGTTCGGC
TTCACCTACCTCGACACCCTCAAGATTTGTCTACGGAAGGAGTGGAACAG
TCATGGGGTCCATTTCCTGGGAAGGGGCGACGTCGCCGATCTCAAGACAC
TCGAGGGCATCCTGAAAGAAGAGGAGATTATGGCGGTGTTCACCGAGTTT
CCTTCAAATCCCTTGCTCCAGTGTCCAGATCTGGGGAAATTAACGGAGCT
GGGGAGGGAGTATGGGTTCCCGGTGGTGGTGGATGACACGATTTCGAACT
TTGACAATGTGGATCTGATGGGAGCCGAACGAGGGAGGGAGGGCGGGGGG
TATGGAGGGATAGACATGAGTGTCAGTAGCTTGACGAAGCTGTTTTCGGG
CAAGGGGGATGTGATGGCCGGTAGTTTGGTGTTGAACGGCAAGAGCCCTT
CATATAAGGAGTTGAGGCGGGCGATGGAGGAAGGGAAAGAGGGGGGGAGG
GAGGGAGGGTTAGGGGACGATGCAGAGTTGTATGAGGAGGACGCAAAGGT
TGTATGGGAGAACGGGAGGGATTTTGAGGAAAGGTCGAGGAGAATCAACG
AGACGACGAGGGGGCTGGTAGAATGGCTGGTGGGGGAGGAGGGGGTGGAG
GAAGTGTCTTACCCCAGTAGGACCCAAAAAGAGATATACGATCGCTTCCG
ACGGAGGGAGGGAGGATACGGGGGACTCTTTTCTGTGTCGTTGAAGGAGG
GGCTGTCGCCGACGGCGTTTTATGATGCCTTGGACGTGTATAAAGGGCCT
AGTCTGGGAACGAATTTCACGCTGGCATGCCCATACACCCTCCTCGCCCA
CTACAACGAGCTGGACTTCGCAAGGAGTCACGGCGTGTGCCCGAATCTGG
TGCGGGTGTCGGTGGGTTTGGAAGGATTGGAGAGCTTGAAGGAGGCGTTC
AGGGTGGCCCTGGAAGCGGCAAGAAAGCCGTTGCCGGAGAATGGATTGTA
CTTCCCACCGGGCTTGAGGATGTAG back to topprotein sequence of jgi.p|Nanoce1779_2|625734 >mRNA_5516-protein ID=mRNA_5516-protein|Name=jgi.p|Nanoce1779_2|625734|organism=Nannochloropsis oceanica|type=polypeptide|length=632bp
MLRRPLLCLYGHAARPEPSVLPSSSTLARALTSVTATASTQSFHKICTRP
LPTPRQRYRHTDATAVQLRKTLGAPIPLNDHAVSVTMPKWQHVVGYEEGD
ADVTDKLVLGYPRFVYHPFVKQLVDVWKAHAVEVGAIAAHEVVGALPFPS
LGTAERCRRFLEDAHAHEPGFPVNLHPVGVMDTYIVTFPSFAAGEAKAYW
QHSGEILSSRKAARVLASLGHPVSTLVNGFPSAAPLSSSTSSSTVAATAV
GEARPGCYRQALKERISALTGQREEDVYLTISGMAAIFKAFHICKQARPN
RRVVVFGFTYLDTLKICLRKEWNSHGVHFLGRGDVADLKTLEGILKEEEI
MAVFTEFPSNPLLQCPDLGKLTELGREYGFPVVVDDTISNFDNVDLMGAE
RGREGGGYGGIDMSVSSLTKLFSGKGDVMAGSLVLNGKSPSYKELRRAME
EGKEGGREGGLGDDAELYEEDAKVVWENGRDFEERSRRINETTRGLVEWL
VGEEGVEEVSYPSRTQKEIYDRFRRREGGYGGLFSVSLKEGLSPTAFYDA
LDVYKGPSLGTNFTLACPYTLLAHYNELDFARSHGVCPNLVRVSVGLEGL
ESLKEAFRVALEAARKPLPENGLYFPPGLRM* back to topmRNA from alignment at scaffold_13:610155..614086+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5516 ID=mRNA_5516|Name=jgi.p|Nanoce1779_2|625734|organism=Nannochloropsis oceanica|type=mRNA|length=3932bp|location=Sequence derived from alignment at scaffold_13:610155..614086+ (Nannochloropsis oceanica)
ACAGGCAGTTTCCTGAATCCCTTCTTTGCTGCCGTAAGAAACAAGTCGCC
AGGAAGCCAAGCCAAGCGACTCAAGCATGCCACGTAGCACCCTCGGATGG
GGCGGGGCAACGGGTGAGGAAGGCAAGAGCAATGGGAATGGGAGGCATGT
TCATGTCTCGTTTGACGATGAAAAAGCGTCCCTCTTGCGACACGGTCCCG
GCTGCAACAACAGCAAGAAAGGCCTTGTGGCCGAGGCTCGCGATGTCGAT
GAAAGTCCGAGAATTACATATGGGGGGACCTTTGCTCCCTCGGGATCCGC
ACCTCTGACGGCGGAGGAGCAGCACCACCACCGCCACCACACCCGCAGGC
CCTCAATCTCGATTGTGGATGGGTACAACAGCCCTGTGCGTCGGGGTGGG
GCACGGAACACCATGGAAATGGAAGGGGAAGCAACGGCAACGATATCCGT
GGGCAGTTCTGGTGGAAGCGGGAGTGTGAGCGGTGGTATCTTTCATCACC
ACGAGAATGCGGGGCATGGCCACAGCCACGACCATTGTGTAATTGCGAGA
CGGGAGGTGGAACAAGTGGAACACCTGAGTAATAAAGTCCGATTCGCCGT
ACATGCATCTATTTTTGCGAATGTCTTCTTGTCGGCTGTTAGCGCGTATG
CCGCAATACGTTCAGGATCTTTGGCGGTGCTGGCTTCTTTAGTGGATACC
CTCCTTGACCTTATTTCCCAAGTCGTCCTTTCCGTCGCCGAGCACCGCAT
GCGAAAGCCCTCTGATGAGCATTACCCTGCCGGGCGCTCGCGGATCGAGC
CGGTCGGTGTTATCATTGTGTCTGTCATCATGGGGGTGGCGGCGCTCGAG
TTGTTGAGGGCGTCGGTCGGAACCATGGTCATGGCGCTGGCCTATGGAAA
GCTACCTCATTTGGGTGAGTGAGTTACATTGGGAAAGATGTGAGGGAGAG
AGGGTATAGAGCAAGGGTTCAACAGAGAGCGAGAGGAATCGAGCGCCAGC
TTGTCGTCAGTGAGCGTGTTTAGATAAAGAGACGAAAGTAAAGGGAACCG
CGTGCACCTGACTAATCCTTCGCCCTCCCTTTTCCCCTCCTTCTCGCCCT
CCCTTCCCTTCCATCACTCGCTTAGACATGGAACCCGTCACCATCGGGAT
CATGCTCGTTGCCGTCGGTGTCAAAGTATGCCTCTACCTCTACTCAAGCA
CCCTGGCAGGAATATCCGGCACGGCCGAAGCCCTCGCGGAGGACCACAGA
AACGATATCATGACAAATTCTTTCTCTGTCATTTCCTCTACCTTCGCGCA
CTACTACCCCAAGGCCTGGGTAGTCGACCCAATCGGCGCCATCCTCATTT
CCTGCCTCATTTTCTACAATTGGCTGCATGTGGGGATGGACCATGCTAGC
AAAATTGTCGGTCTCTCTGCTCCTCCTGAGACACTTGAAACCATAACAGA
GCTCGCCGGCAATCATCACACTCAGCTCGAGTTGGATATCATTCGTGCGT
ATCACTTTGGTCCCAATTTCCTCGTTGAATTGGAGGTGGTGTTACCCAGC
GAGATGAGCGTAAAGGAGGCCCACGACATTGCGTTGGGGCTGCAGCAGAA
GGTGGAAATGCAGAGTTTTGTGGAGCGTTGTTTTGTGCATGTGGATTATC
AGACGAGAGGGTATAATGAGCATAAAATATAGGAGAGGGGGAGGGAGGGA
GGAAGGGACGTGTAAATTAGAATGGGGGAAATCGAGGAGGGAGGACAGCG
AAATATGAGGATGCAAGGATACCACCTCGAGATGACAACAGAAGAGCAAT
AACAAGAATGAGAAACAGGAGATTGGCGAAAGAATAGCGAAATGTAAGAT
GAAATAATGTTTTGGCATCGATATGTGATGATACAACAGACCCCTTCGTT
GACCACTTCGACAGGACTGCAAATACTGTACCCACCAACCACACGGCTTT
TGCTTTATACGCTGACTCGGTCCACGCCACACGATACAGGCTATACTAAC
AGGGCATTACGTCAAGCAGCTGGGGGATTGTTTCGAATGCTCCGCCGGCC
TCTGTTGTGCTTGTACGGCCACGCTGCGAGGCCAGAACCATCAGTGTTGC
CATCATCATCAACGCTTGCTCGCGCTTTGACCTCCGTCACTGCCACTGCT
AGTACCCAGTCCTTTCATAAAATATGCACGCGGCCCTTGCCAACACCAAG
GCAAAGATACCGCCACACCGATGCCACTGCAGTACAGCTGCGGAAGACGC
TGGGTGCGCCCATCCCCTTGAATGACCACGCCGTGTCCGTGACCATGCCC
AAGTGGCAGCACGTGGTGGGTTACGAGGAAGGCGACGCCGACGTGACCGA
CAAGCTTGTGCTAGGATACCCCCGCTTTGTCTACCATCCGTTCGTGAAGC
AATTGGTTGATGTGTGGAAGGCACATGCTGTCGAGGTAGGCGCCATCGCC
GCACATGAAGTGGTTGGGGCCCTGCCCTTCCCCTCACTAGGTACAGCGGA
GCGTTGCCGTCGTTTCCTGGAAGATGCGCACGCGCACGAGCCAGGGTTTC
CTGTGAATTTGCATCCTGTGGGTGTCATGGACACTTACATTGTCACATTC
CCCTCTTTTGCCGCAGGAGAGGCGAAGGCATACTGGCAACACAGTGGGGA
AATCTTGTCCTCGCGCAAGGCCGCGCGGGTGCTGGCGTCGTTGGGTCATC
CTGTCTCTACCTTGGTCAACGGCTTCCCATCTGCTGCCCCTCTCTCCTCC
TCTACTTCGTCCTCTACTGTAGCTGCAACGGCAGTGGGCGAGGCAAGGCC
TGGGTGCTACCGACAGGCCTTGAAGGAACGAATAAGCGCCTTGACCGGTC
AACGGGAGGAAGACGTGTACCTGACAATCAGTGGCATGGCCGCCATCTTC
AAGGCATTCCATATATGCAAGCAAGCCCGTCCGAACCGTCGGGTGGTGGT
GTTCGGCTTCACCTACCTCGACACCCTCAAGATTTGTCTACGGAAGGAGT
GGAACAGTCATGGGGTCCATTTCCTGGGAAGGGGCGACGTCGCCGATCTC
AAGACACTCGAGGGCATCCTGAAAGAAGAGGAGATTATGGCGGTGTTCAC
CGAGTTTCCTTCAAATCCCTTGCTCCAGTGTCCAGATCTGGGGAAATTAA
CGGAGCTGGGGAGGGAGTATGGGTTCCCGGTGGTGGTGGATGACACGATT
TCGAACTTTGACAATGTGGATCTGATGGGAGCCGAACGAGGGAGGGAGGG
CGGGGGGTATGGAGGGATAGACATGAGTGTCAGTAGCTTGACGAAGCTGT
TTTCGGGCAAGGGGGATGTGATGGCCGGTAGTTTGGTGTTGAACGGCAAG
AGCCCTTCATATAAGGAGTTGAGGCGGGCGATGGAGGAAGGGAAAGAGGG
GGGGAGGGAGGGAGGGTTAGGGGACGATGCAGAGTTGTATGAGGAGGACG
CAAAGGTTGTATGGGAGAACGGGAGGGATTTTGAGGAAAGGTCGAGGAGA
ATCAACGAGACGACGAGGGGGCTGGTAGAATGGCTGGTGGGGGAGGAGGG
GGTGGAGGAAGTGTCTTACCCCAGTAGGACCCAAAAAGAGATATACGATC
GCTTCCGACGGAGGGAGGGAGGATACGGGGGACTCTTTTCTGTGTCGTTG
AAGGAGGGGCTGTCGCCGACGGCGTTTTATGATGCCTTGGACGTGTATAA
AGGGCCTAGTCTGGGAACGAATTTCACGCTGGCATGCCCATACACCCTCC
TCGCCCACTACAACGAGCTGGACTTCGCAAGGAGTCACGGCGTGTGCCCG
AATCTGGTGCGGGTGTCGGTGGGTTTGGAAGGATTGGAGAGCTTGAAGGA
GGCGTTCAGGGTGGCCCTGGAAGCGGCAAGAAAGCCGTTGCCGGAGAATG
GATTGTACTTCCCACCGGGCTTGAGGATGTAG back to topCoding sequence (CDS) from alignment at scaffold_13:610155..614086+ >mRNA_5516 ID=mRNA_5516|Name=jgi.p|Nanoce1779_2|625734|organism=Nannochloropsis oceanica|type=CDS|length=1896bp|location=Sequence derived from alignment at scaffold_13:610155..614086+ (Nannochloropsis oceanica)
ATGCTCCGCCGGCCTCTGTTGTGCTTGTACGGCCACGCTGCGAGGCCAGA
ACCATCAGTGTTGCCATCATCATCAACGCTTGCTCGCGCTTTGACCTCCG
TCACTGCCACTGCTAGTACCCAGTCCTTTCATAAAATATGCACGCGGCCC
TTGCCAACACCAAGGCAAAGATACCGCCACACCGATGCCACTGCAGTACA
GCTGCGGAAGACGCTGGGTGCGCCCATCCCCTTGAATGACCACGCCGTGT
CCGTGACCATGCCCAAGTGGCAGCACGTGGTGGGTTACGAGGAAGGCGAC
GCCGACGTGACCGACAAGCTTGTGCTAGGATACCCCCGCTTTGTCTACCA
TCCGTTCGTGAAGCAATTGGTTGATGTGTGGAAGGCACATGCTGTCGAGG
TAGGCGCCATCGCCGCACATGAAGTGGTTGGGGCCCTGCCCTTCCCCTCA
CTAGGTACAGCGGAGCGTTGCCGTCGTTTCCTGGAAGATGCGCACGCGCA
CGAGCCAGGGTTTCCTGTGAATTTGCATCCTGTGGGTGTCATGGACACTT
ACATTGTCACATTCCCCTCTTTTGCCGCAGGAGAGGCGAAGGCATACTGG
CAACACAGTGGGGAAATCTTGTCCTCGCGCAAGGCCGCGCGGGTGCTGGC
GTCGTTGGGTCATCCTGTCTCTACCTTGGTCAACGGCTTCCCATCTGCTG
CCCCTCTCTCCTCCTCTACTTCGTCCTCTACTGTAGCTGCAACGGCAGTG
GGCGAGGCAAGGCCTGGGTGCTACCGACAGGCCTTGAAGGAACGAATAAG
CGCCTTGACCGGTCAACGGGAGGAAGACGTGTACCTGACAATCAGTGGCA
TGGCCGCCATCTTCAAGGCATTCCATATATGCAAGCAAGCCCGTCCGAAC
CGTCGGGTGGTGGTGTTCGGCTTCACCTACCTCGACACCCTCAAGATTTG
TCTACGGAAGGAGTGGAACAGTCATGGGGTCCATTTCCTGGGAAGGGGCG
ACGTCGCCGATCTCAAGACACTCGAGGGCATCCTGAAAGAAGAGGAGATT
ATGGCGGTGTTCACCGAGTTTCCTTCAAATCCCTTGCTCCAGTGTCCAGA
TCTGGGGAAATTAACGGAGCTGGGGAGGGAGTATGGGTTCCCGGTGGTGG
TGGATGACACGATTTCGAACTTTGACAATGTGGATCTGATGGGAGCCGAA
CGAGGGAGGGAGGGCGGGGGGTATGGAGGGATAGACATGAGTGTCAGTAG
CTTGACGAAGCTGTTTTCGGGCAAGGGGGATGTGATGGCCGGTAGTTTGG
TGTTGAACGGCAAGAGCCCTTCATATAAGGAGTTGAGGCGGGCGATGGAG
GAAGGGAAAGAGGGGGGGAGGGAGGGAGGGTTAGGGGACGATGCAGAGTT
GTATGAGGAGGACGCAAAGGTTGTATGGGAGAACGGGAGGGATTTTGAGG
AAAGGTCGAGGAGAATCAACGAGACGACGAGGGGGCTGGTAGAATGGCTG
GTGGGGGAGGAGGGGGTGGAGGAAGTGTCTTACCCCAGTAGGACCCAAAA
AGAGATATACGATCGCTTCCGACGGAGGGAGGGAGGATACGGGGGACTCT
TTTCTGTGTCGTTGAAGGAGGGGCTGTCGCCGACGGCGTTTTATGATGCC
TTGGACGTGTATAAAGGGCCTAGTCTGGGAACGAATTTCACGCTGGCATG
CCCATACACCCTCCTCGCCCACTACAACGAGCTGGACTTCGCAAGGAGTC
ACGGCGTGTGCCCGAATCTGGTGCGGGTGTCGGTGGGTTTGGAAGGATTG
GAGAGCTTGAAGGAGGCGTTCAGGGTGGCCCTGGAAGCGGCAAGAAAGCC
GTTGCCGGAGAATGGATTGTACTTCCCACCGGGCTTGAGGATGTAG back to top
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