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Properties
| Property Name | Value |
|---|
| TranscriptId | 556717 |
| Track | FilteredModels2 |
| ProteinId | 556631 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:610155..613398 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5515 ID=mRNA_5515|Name=jgi.p|Nanoce1779_2|556631|organism=Nannochloropsis oceanica|type=mRNA|length=2887bp
ACAGGCAGTTTCCTGAATCCCTTCTTTGCTGCCGTAAGAAACAAGTCGCC
AGGAAGCCAAGCCAAGCGACTCAAGCATGCCACGTAGCACCCTCGGATGG
GGCGGGGCAACGGGTGAGGAAGGCAAGAGCAATGGGAATGGGAGGCATGT
TCATGTCTCGTTTGACGATGAAAAAGCGTCCCTCTTGCGACACGGTCCCG
GCTGCAACAACAGCAAGAAAGGCCTTGTGGCCGAGGCTCGCGATGTCGAT
GAAAGTCCGAGAATTACATATGGGGGGACCTTTGCTCCCTCGGGATCCGC
ACCTCTGACGGCGGAGGAGCAGCACCACCACCGCCACCACACCCGCAGGC
CCTCAATCTCGATTGTGGATGGGTACAACAGCCCTGTGCGTCGGGGTGGG
GCACGGAACACCATGGAAATGGAAGGGGAAGCAACGGCAACGATATCCGT
GGGCAGTTCTGGTGGAAGCGGGAGTGTGAGCGGTGGTATCTTTCATCACC
ACGAGAATGCGGGGCATGGCCACAGCCACGACCATTGTGTAATTGCGAGA
CGGGAGGTGGAACAAGTGGAACACCTGAGTAATAAAGTCCGATTCGCCGT
ACATGCATCTATTTTTGCGAATGTCTTCTTGTCGGCTGTTAGCGCGTATG
CCGCAATACGTTCAGGATCTTTGGCGGTGCTGGCTTCTTTAGTGGATACC
CTCCTTGACCTTATTTCCCAAGTCGTCCTTTCCGTCGCCGAGCACCGCAT
GCGAAAGCCCTCTGATGAGCATTACCCTGCCGGGCGCTCGCGGATCGAGC
CGGTCGGTGTTATCATTGTGTCTGTCATCATGGGGGTGGCGGCGCTCGAG
TTGTTGAGGGCGTCGGTCGGAACCATGGTCATGGCGCTGGCCTATGGAAA
GCTACCTCATTTGGACATGGAACCCGTCACCATCGGGATCATGCTCGTTG
CCGTCGGTGTCAAAGTATGCCTCTACCTCTACTCAAGCACCCTGGCAGGA
ATATCCGGCACGGCCGAAGCCCTCGCGGAGGACCACAGAAACGATATCAT
GACAAATTCTTTCTCTGTCATTTCCTCTACCTTCGCGCACTACTACCCCA
AGGCCTGGGTAGTCGACCCAATCGGCGCCATCCTCATTTCCTGCCTCATT
TTCTACAATTGGCTGCATGTGGGGATGGACCATGCTAGCAAAATTGTCGG
TCTCTCTGCTCCTCCTGAGACACTTGAAACCATAACAGAGCTCGCCGGCA
ATCATCACACTCAGCTCGAGTTGGATATCATTCGTGCGTATCACTTTGGT
CCCAATTTCCTCGTTGAATTGGAGGTGGTGTTACCCAGCGAGATGAGCGT
AAAGGAGGCCCACGACATTGCGTTGGGGCTGCAGCAGAAGGTGGAAATGC
AGAGTTTTGTGGAGCGTTGTTTTGTGCATGTGGATTATCAGACGAGAGGG
TATAATGAGCATAAAATATAGGAGAGGGGGAGGGAGGGAGGAAGGGACGT
GTAAATTAGAATGGGGGAAATCGAGGAGGGAGGACAGCGAAATATGAGGA
TGCAAGGATACCACCTCGAGATGACAACAGAAGAGCAATAACAAGAATGA
GAAACAGGAGATTGGCGAAAGAATAGCGAAATGCTATACTAACAGGGCAT
TACGTCAAGCAGCTGGGGGATTGTTTCGAATGCTCCGCCGGCCTCTGTTG
TGCTTGTACGGCCACGCTGCGAGGCCAGAACCATCAGTGTTGCCATCATC
ATCAACGCTTGCTCGCGCTTTGACCTCCGTCACTGCCACTGCTAGTACCC
AGTCCTTTCATAAAATATGCACGCGGCCCTTGCCAACACCAAGGCAAAGA
TACCGCCACACCGATGCCACTGCAGTACAGCTGCGGAAGACGCTGGGTGC
GCCCATCCCCTTGAATGACCACGCCGTGTCCGTGACCATGCCCAAGTGGC
AGCACGTGGTGGGTTACGAGGAAGGCGACGCCGACGTGACCGACAAGCTT
GTGCTAGGATACCCCCGCTTTGTCTACCATCCGTTCGTGAAGCAATTGGT
TGATGTGTGGAAGGCACATGCTGTCGAGGTAGGCGCCATCGCCGCACATG
AAGTGGTTGGGGCCCTGCCCTTCCCCTCACTAGGTACAGCGGAGCGTTGC
CGTCGTTTCCTGGAAGATGCGCACGCGCACGAGCCAGGGTTTCCTGTGAA
TTTGCATCCTGTGGGTGTCATGGACACTTACATTGTCACATTCCCCTCTT
TTGCCGCAGGAGAGGCGAAGGCATACTGGCAACACAGTGGGGAAATCTTG
TCCTCGCGCAAGGCCGCGCGGGTGCTGGCGTCGTTGGGTCATCCTGTCTC
TACCTTGGTCAACGGCTTCCCATCTGCTGCCCCTCTCTCCTCCTCTACTT
CGTCCTCTACTGTAGCTGCAACGGCAGTGGGCGAGGCAAGGCCTGGGTGC
TACCGACAGGCCTTGAAGGAACGAATAAGCGCCTTGACCGGTCAACGGGA
GGAAGACGTGTACCTGACAATCAGTGGCATGGCCGCCATCTTCAAGGCAT
TCCATATATGCAAGCAAGCCCGTCCGAACCGTCGGGTGGTGGTGTTCGGC
TTCACCTACCTCGACACCCTCAAGATTTGTCTACGGAAGGAGTGGAACAG
TCATGGGGTCCATTTCCTGGGAAGGGGCGACGTCGCCGATCTCAAGACAC
TCGAGGGCATCCTGAAAGAAGAGGAGATTATGGCGGTGTTCACCGAGTTT
CCTTCAAATCCCTTGCTCCAGTGTCCAGATCTGGGGAAATTAACGGAGCT
GGGGAGGGAGTATGGGTTCCCGGTGGTGGTGGATGACACGATTTCGAACT
TTGACAATGTGGATCTGATGGGAGCCGAACGAGGGAG back to topprotein sequence of jgi.p|Nanoce1779_2|556631 >mRNA_5515-protein ID=mRNA_5515-protein|Name=jgi.p|Nanoce1779_2|556631|organism=Nannochloropsis oceanica|type=polypeptide|length=465bp
MPRSTLGWGGATGEEGKSNGNGRHVHVSFDDEKASLLRHGPGCNNSKKGL
VAEARDVDESPRITYGGTFAPSGSAPLTAEEQHHHRHHTRRPSISIVDGY
NSPVRRGGARNTMEMEGEATATISVGSSGGSGSVSGGIFHHHENAGHGHS
HDHCVIARREVEQVEHLSNKVRFAVHASIFANVFLSAVSAYAAIRSGSLA
VLASLVDTLLDLISQVVLSVAEHRMRKPSDEHYPAGRSRIEPVGVIIVSV
IMGVAALELLRASVGTMVMALAYGKLPHLDMEPVTIGIMLVAVGVKVCLY
LYSSTLAGISGTAEALAEDHRNDIMTNSFSVISSTFAHYYPKAWVVDPIG
AILISCLIFYNWLHVGMDHASKIVGLSAPPETLETITELAGNHHTQLELD
IIRAYHFGPNFLVELEVVLPSEMSVKEAHDIALGLQQKVEMQSFVERCFV
HVDYQTRGYNEHKI* back to topmRNA from alignment at scaffold_13:610155..613398+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5515 ID=mRNA_5515|Name=jgi.p|Nanoce1779_2|556631|organism=Nannochloropsis oceanica|type=mRNA|length=3244bp|location=Sequence derived from alignment at scaffold_13:610155..613398+ (Nannochloropsis oceanica)
ACAGGCAGTTTCCTGAATCCCTTCTTTGCTGCCGTAAGAAACAAGTCGCC
AGGAAGCCAAGCCAAGCGACTCAAGCATGCCACGTAGCACCCTCGGATGG
GGCGGGGCAACGGGTGAGGAAGGCAAGAGCAATGGGAATGGGAGGCATGT
TCATGTCTCGTTTGACGATGAAAAAGCGTCCCTCTTGCGACACGGTCCCG
GCTGCAACAACAGCAAGAAAGGCCTTGTGGCCGAGGCTCGCGATGTCGAT
GAAAGTCCGAGAATTACATATGGGGGGACCTTTGCTCCCTCGGGATCCGC
ACCTCTGACGGCGGAGGAGCAGCACCACCACCGCCACCACACCCGCAGGC
CCTCAATCTCGATTGTGGATGGGTACAACAGCCCTGTGCGTCGGGGTGGG
GCACGGAACACCATGGAAATGGAAGGGGAAGCAACGGCAACGATATCCGT
GGGCAGTTCTGGTGGAAGCGGGAGTGTGAGCGGTGGTATCTTTCATCACC
ACGAGAATGCGGGGCATGGCCACAGCCACGACCATTGTGTAATTGCGAGA
CGGGAGGTGGAACAAGTGGAACACCTGAGTAATAAAGTCCGATTCGCCGT
ACATGCATCTATTTTTGCGAATGTCTTCTTGTCGGCTGTTAGCGCGTATG
CCGCAATACGTTCAGGATCTTTGGCGGTGCTGGCTTCTTTAGTGGATACC
CTCCTTGACCTTATTTCCCAAGTCGTCCTTTCCGTCGCCGAGCACCGCAT
GCGAAAGCCCTCTGATGAGCATTACCCTGCCGGGCGCTCGCGGATCGAGC
CGGTCGGTGTTATCATTGTGTCTGTCATCATGGGGGTGGCGGCGCTCGAG
TTGTTGAGGGCGTCGGTCGGAACCATGGTCATGGCGCTGGCCTATGGAAA
GCTACCTCATTTGGGTGAGTGAGTTACATTGGGAAAGATGTGAGGGAGAG
AGGGTATAGAGCAAGGGTTCAACAGAGAGCGAGAGGAATCGAGCGCCAGC
TTGTCGTCAGTGAGCGTGTTTAGATAAAGAGACGAAAGTAAAGGGAACCG
CGTGCACCTGACTAATCCTTCGCCCTCCCTTTTCCCCTCCTTCTCGCCCT
CCCTTCCCTTCCATCACTCGCTTAGACATGGAACCCGTCACCATCGGGAT
CATGCTCGTTGCCGTCGGTGTCAAAGTATGCCTCTACCTCTACTCAAGCA
CCCTGGCAGGAATATCCGGCACGGCCGAAGCCCTCGCGGAGGACCACAGA
AACGATATCATGACAAATTCTTTCTCTGTCATTTCCTCTACCTTCGCGCA
CTACTACCCCAAGGCCTGGGTAGTCGACCCAATCGGCGCCATCCTCATTT
CCTGCCTCATTTTCTACAATTGGCTGCATGTGGGGATGGACCATGCTAGC
AAAATTGTCGGTCTCTCTGCTCCTCCTGAGACACTTGAAACCATAACAGA
GCTCGCCGGCAATCATCACACTCAGCTCGAGTTGGATATCATTCGTGCGT
ATCACTTTGGTCCCAATTTCCTCGTTGAATTGGAGGTGGTGTTACCCAGC
GAGATGAGCGTAAAGGAGGCCCACGACATTGCGTTGGGGCTGCAGCAGAA
GGTGGAAATGCAGAGTTTTGTGGAGCGTTGTTTTGTGCATGTGGATTATC
AGACGAGAGGGTATAATGAGCATAAAATATAGGAGAGGGGGAGGGAGGGA
GGAAGGGACGTGTAAATTAGAATGGGGGAAATCGAGGAGGGAGGACAGCG
AAATATGAGGATGCAAGGATACCACCTCGAGATGACAACAGAAGAGCAAT
AACAAGAATGAGAAACAGGAGATTGGCGAAAGAATAGCGAAATGTAAGAT
GAAATAATGTTTTGGCATCGATATGTGATGATACAACAGACCCCTTCGTT
GACCACTTCGACAGGACTGCAAATACTGTACCCACCAACCACACGGCTTT
TGCTTTATACGCTGACTCGGTCCACGCCACACGATACAGGCTATACTAAC
AGGGCATTACGTCAAGCAGCTGGGGGATTGTTTCGAATGCTCCGCCGGCC
TCTGTTGTGCTTGTACGGCCACGCTGCGAGGCCAGAACCATCAGTGTTGC
CATCATCATCAACGCTTGCTCGCGCTTTGACCTCCGTCACTGCCACTGCT
AGTACCCAGTCCTTTCATAAAATATGCACGCGGCCCTTGCCAACACCAAG
GCAAAGATACCGCCACACCGATGCCACTGCAGTACAGCTGCGGAAGACGC
TGGGTGCGCCCATCCCCTTGAATGACCACGCCGTGTCCGTGACCATGCCC
AAGTGGCAGCACGTGGTGGGTTACGAGGAAGGCGACGCCGACGTGACCGA
CAAGCTTGTGCTAGGATACCCCCGCTTTGTCTACCATCCGTTCGTGAAGC
AATTGGTTGATGTGTGGAAGGCACATGCTGTCGAGGTAGGCGCCATCGCC
GCACATGAAGTGGTTGGGGCCCTGCCCTTCCCCTCACTAGGTACAGCGGA
GCGTTGCCGTCGTTTCCTGGAAGATGCGCACGCGCACGAGCCAGGGTTTC
CTGTGAATTTGCATCCTGTGGGTGTCATGGACACTTACATTGTCACATTC
CCCTCTTTTGCCGCAGGAGAGGCGAAGGCATACTGGCAACACAGTGGGGA
AATCTTGTCCTCGCGCAAGGCCGCGCGGGTGCTGGCGTCGTTGGGTCATC
CTGTCTCTACCTTGGTCAACGGCTTCCCATCTGCTGCCCCTCTCTCCTCC
TCTACTTCGTCCTCTACTGTAGCTGCAACGGCAGTGGGCGAGGCAAGGCC
TGGGTGCTACCGACAGGCCTTGAAGGAACGAATAAGCGCCTTGACCGGTC
AACGGGAGGAAGACGTGTACCTGACAATCAGTGGCATGGCCGCCATCTTC
AAGGCATTCCATATATGCAAGCAAGCCCGTCCGAACCGTCGGGTGGTGGT
GTTCGGCTTCACCTACCTCGACACCCTCAAGATTTGTCTACGGAAGGAGT
GGAACAGTCATGGGGTCCATTTCCTGGGAAGGGGCGACGTCGCCGATCTC
AAGACACTCGAGGGCATCCTGAAAGAAGAGGAGATTATGGCGGTGTTCAC
CGAGTTTCCTTCAAATCCCTTGCTCCAGTGTCCAGATCTGGGGAAATTAA
CGGAGCTGGGGAGGGAGTATGGGTTCCCGGTGGTGGTGGATGACACGATT
TCGAACTTTGACAATGTGGATCTGATGGGAGCCGAACGAGGGAG back to topCoding sequence (CDS) from alignment at scaffold_13:610155..613398+ >mRNA_5515 ID=mRNA_5515|Name=jgi.p|Nanoce1779_2|556631|organism=Nannochloropsis oceanica|type=CDS|length=2790bp|location=Sequence derived from alignment at scaffold_13:610155..613398+ (Nannochloropsis oceanica)
ATGCCACGTAGCACCCTCGGATGGGGCGGGGCAACGGGTGAGGAAGGCAA
GAGCAATGGGAATGGGAGGCATGTTCATGTCTCGTTTGACGATGAAAAAG
CGTCCCTCTTGCGACACGGTCCCGGCTGCAACAACAGCAAGAAAGGCCTT
GTGGCCGAGGCTCGCGATGTCGATGAAAGTCCGAGAATTACATATGGGGG
GACCTTTGCTCCCTCGGGATCCGCACCTCTGACGGCGGAGGAGCAGCACC
ACCACCGCCACCACACCCGCAGGCCCTCAATCTCGATTGTGGATGGGTAC
AACAGCCCTGTGCGTCGGGGTGGGGCACGGAACACCATGGAAATGGAAGG
GGAAGCAACGGCAACGATATCCGTGGGCAGTTCTGGTGGAAGCGGGAGTG
TGAGCGGTGGTATCTTTCATCACCACGAGAATGCGGGGCATGGCCACAGC
CACGACCATTGTGTAATTGCGAGACGGGAGGTGGAACAAGTGGAACACCT
GAGTAATAAAGTCCGATTCGCCGTACATGCATCTATTTTTGCGAATGTCT
TCTTGTCGGCTGTTAGCGCGTATGCCGCAATACGTTCAGGATCTTTGGCG
GTGCTGGCTTCTTTAGTGGATACCCTCCTTGACCTTATTTCCCAAGTCGT
CCTTTCCGTCGCCGAGCACCGCATGCGAAAGCCCTCTGATGAGCATTACC
CTGCCGGGCGCTCGCGGATCGAGCCGGTCGGTGTTATCATTGTGTCTGTC
ATCATGGGGGTGGCGGCGCTCGAGTTGTTGAGGGCGTCGGTCGGAACCAT
GGTCATGGCGCTGGCCTATGGAAAGCTACCTCATTTGGACATGGAACCCG
TCACCATCGGGATCATGCTCGTTGCCGTCGGTGTCAAAGTATGCCTCTAC
CTCTACTCAAGCACCCTGGCAGGAATATCCGGCACGGCCGAAGCCCTCGC
GGAGGACCACAGAAACGATATCATGACAAATTCTTTCTCTGTCATTTCCT
CTACCTTCGCGCACTACTACCCCAAGGCCTGGGTAGTCGACCCAATCGGC
GCCATCCTCATTTCCTGCCTCATTTTCTACAATTGGCTGCATGTGGGGAT
GGACCATGCTAGCAAAATTGTCGGTCTCTCTGCTCCTCCTGAGACACTTG
AAACCATAACAGAGCTCGCCGGCAATCATCACACTCAGCTCGAGTTGGAT
ATCATTCGTGCGTATCACTTTGGTCCCAATTTCCTCGTTGAATTGGAGGT
GGTGTTACCCAGCGAGATGAGCGTAAAGGAGGCCCACGACATTGCGTTGG
GGCTGCAGCAGAAGGTGGAAATGCAGAGTTTTGTGGAGCGTTGTTTTGTG
CATGTGGATTATCAGACGAGAGGGTATAATGAGCATAAAATATAGATGCC
ACGTAGCACCCTCGGATGGGGCGGGGCAACGGGTGAGGAAGGCAAGAGCA
ATGGGAATGGGAGGCATGTTCATGTCTCGTTTGACGATGAAAAAGCGTCC
CTCTTGCGACACGGTCCCGGCTGCAACAACAGCAAGAAAGGCCTTGTGGC
CGAGGCTCGCGATGTCGATGAAAGTCCGAGAATTACATATGGGGGGACCT
TTGCTCCCTCGGGATCCGCACCTCTGACGGCGGAGGAGCAGCACCACCAC
CGCCACCACACCCGCAGGCCCTCAATCTCGATTGTGGATGGGTACAACAG
CCCTGTGCGTCGGGGTGGGGCACGGAACACCATGGAAATGGAAGGGGAAG
CAACGGCAACGATATCCGTGGGCAGTTCTGGTGGAAGCGGGAGTGTGAGC
GGTGGTATCTTTCATCACCACGAGAATGCGGGGCATGGCCACAGCCACGA
CCATTGTGTAATTGCGAGACGGGAGGTGGAACAAGTGGAACACCTGAGTA
ATAAAGTCCGATTCGCCGTACATGCATCTATTTTTGCGAATGTCTTCTTG
TCGGCTGTTAGCGCGTATGCCGCAATACGTTCAGGATCTTTGGCGGTGCT
GGCTTCTTTAGTGGATACCCTCCTTGACCTTATTTCCCAAGTCGTCCTTT
CCGTCGCCGAGCACCGCATGCGAAAGCCCTCTGATGAGCATTACCCTGCC
GGGCGCTCGCGGATCGAGCCGGTCGGTGTTATCATTGTGTCTGTCATCAT
GGGGGTGGCGGCGCTCGAGTTGTTGAGGGCGTCGGTCGGAACCATGGTCA
TGGCGCTGGCCTATGGAAAGCTACCTCATTTGGACATGGAACCCGTCACC
ATCGGGATCATGCTCGTTGCCGTCGGTGTCAAAGTATGCCTCTACCTCTA
CTCAAGCACCCTGGCAGGAATATCCGGCACGGCCGAAGCCCTCGCGGAGG
ACCACAGAAACGATATCATGACAAATTCTTTCTCTGTCATTTCCTCTACC
TTCGCGCACTACTACCCCAAGGCCTGGGTAGTCGACCCAATCGGCGCCAT
CCTCATTTCCTGCCTCATTTTCTACAATTGGCTGCATGTGGGGATGGACC
ATGCTAGCAAAATTGTCGGTCTCTCTGCTCCTCCTGAGACACTTGAAACC
ATAACAGAGCTCGCCGGCAATCATCACACTCAGCTCGAGTTGGATATCAT
TCGTGCGTATCACTTTGGTCCCAATTTCCTCGTTGAATTGGAGGTGGTGT
TACCCAGCGAGATGAGCGTAAAGGAGGCCCACGACATTGCGTTGGGGCTG
CAGCAGAAGGTGGAAATGCAGAGTTTTGTGGAGCGTTGTTTTGTGCATGT
GGATTATCAGACGAGAGGGTATAATGAGCATAAAATATAG back to top
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