Properties
| Property Name | Value |
|---|
| TranscriptId | 592886 |
| Track | FilteredModels2 |
| ProteinId | 592800 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:607378..609712 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5514 ID=mRNA_5514|Name=jgi.p|Nanoce1779_2|592800|organism=Nannochloropsis oceanica|type=mRNA|length=1815bp
AGGGAGATCTGTACCACGCGCCAGAATCTGCAGCAATTGCCATCGCGCCT
TCCCCACTCGCTACATCACCATGCGCGCCTTCTATTTTTGCCTCTTAGGC
TTGGCGGCTTCTTCATGTGATGTGTCGCCTTCGTCCCTGTCAGACAGCAG
GCGGGCTGCACGGTTGTTGACACAATCACCAGAGCCCTTGGCTCCCGCAT
CCACCACCTCGCCCTTGGCCCCCCTTCCCAAGTGGACCACGCGCCGAGGC
GGGCTTCAAAACCCCTTTCGAAAGCATAAGCAAACTGCCCCGCCCGTCGA
AAGCACGACTAGCAACAAGGCACCTGCAGTTACCAAGATCGATCCTGCGG
TTGCCTACAGCACGGCGGTTCGCCGAACAATGCTTGCGGTAGGCGCCGCG
TGTGCCTTCGGGTTTGGCTTGTGGTACATCGAGGGAAAGAAGTCTGCAAT
GGAGTTTTTTGCCGGGTATCTGATCGAGGAAAGTCTGAGTGTGGATAATA
TTTTTGTCTTCATCATGCTGTTCGAGTACTTTAAGGTTCCCTTTGAATAC
CAATCGCGTGCCCTAACGTGGGGAATTGTCGGGGCGGTCGCCATGCGGGG
TGTGATGATCTCCGTGGGAGTGGCCGCGATTCAGAGGTTCCGATGGGTGG
TGTTAATGTTCGCCGGTATATTGCTGGGGAGCGCGTTCAAGCTGCTGGCG
GAAACGGGGCATGAAGGGGGGGAGGAGGATTTGAGCGACAACTTGATGTT
GAGGGTGGCGAAGAAATGTGTGAATGCCGTGGATGAGTACGATGGGAACA
AGTTCTTCACGAAGAGGAACGGAAAGCGATTCGCGACGCCCCTGTTCATG
TGCTTGATTTGTATTGAACTGTCAGATTTCGTGTTTGCCGTGGACTCCAT
TCCGGCGGTGTTGGGCGTGTCCAAGGACCCCCTCATTGTCTACTCCTCCA
ACATCTTCGCCATCATGGCCCTGCGTTCCCTCTACACGCTGGTGGCCACT
GCTGTCAACACGCTCGAGTACATCAAGCCCTCTGTGGCGTTAGTCTTGGC
CTTTGTCGGGGGCAAGATGATCGCGGAGTTCTTTCATGTGGAAGTCCCCA
TCTCAGTGTCCCTTTTGGTGGTGATGTCCTTGTTGGGTGGAGGGATTGGA
TTGAGCGTGTTAAAGCAGAGGTTTACTGCGAGAAACGCGGAAACAAAGCG
GTAGATGGAGAGCAGGGGGGGGGAGGGGTGTAGTGTACATTTCTCACATT
ATGTGGCCAGTTGTGAGAGTGAGATCGGGAGAGAAGGTGAGAGGGAAGGT
GGGAGGGACAACTGCGTTCATTAGTTGGTCTGCGGTGGGAGGTGAAACGG
GAGTTTCGTGAGGAAATCATGAAAAGAGCACGATACGCTAAAAAAAATGC
TCAGAGAGAACTGCTCTTCTGCGTGCGTGACCTCCCCACACAGGCCAACA
CCCTCCCAACGCAAGCTAGCATTGCATGAAGTTAAAAAACAGATAGATCA
TTGACGCAAAGCGGTGCATACCTTAGCTAGCTATTATTGACATTCCTGTG
AGATTTCTCCCTACCGCCGGAGACACATTTTGCACAATGTCTTGGCCTTG
ACAATTCCATCAGCAACAAAACCTCCCGCCTCTCGATCTGGCGAGCGGTC
TAAGTCGCCCGCTTATCATAAGGCTTGCCCGTCACACCTTGCTCACGCAC
CAGCAACATTACCACACTGACCAGTACCCTCACCAACTCTCTTATCACCT
TAACCCTGTCAGACAGTTGCTTTCGCAGTGGGAGGTGAGGCAACGAAGCA
ACGGGCAGGTGCCAG back to topprotein sequence of jgi.p|Nanoce1779_2|592800 >mRNA_5514-protein ID=mRNA_5514-protein|Name=jgi.p|Nanoce1779_2|592800|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MRAFYFCLLGLAASSCDVSPSSLSDSRRAARLLTQSPEPLAPASTTSPLA
PLPKWTTRRGGLQNPFRKHKQTAPPVESTTSNKAPAVTKIDPAVAYSTAV
RRTMLAVGAACAFGFGLWYIEGKKSAMEFFAGYLIEESLSVDNIFVFIML
FEYFKVPFEYQSRALTWGIVGAVAMRGVMISVGVAAIQRFRWVVLMFAGI
LLGSAFKLLAETGHEGGEEDLSDNLMLRVAKKCVNAVDEYDGNKFFTKRN
GKRFATPLFMCLICIELSDFVFAVDSIPAVLGVSKDPLIVYSSNIFAIMA
LRSLYTLVATAVNTLEYIKPSVALVLAFVGGKMIAEFFHVEVPISVSLLV
VMSLLGGGIGLSVLKQRFTARNAETKR* back to topmRNA from alignment at scaffold_13:607378..609712- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5514 ID=mRNA_5514|Name=jgi.p|Nanoce1779_2|592800|organism=Nannochloropsis oceanica|type=mRNA|length=2335bp|location=Sequence derived from alignment at scaffold_13:607378..609712- (Nannochloropsis oceanica)
AGGGAGATCTGTACCACGCGCCAGAATCTGCAGCAATTGCCATCGCGCCT
TCCCCACTCGCTACATCACCATGCGCGCCTTCTATTTTTGCCTCTTAGGC
TTGGCGGCTTCTTCATGTGATGTGTCGCCTTCGTCCCTGTCAGACAGCAG
GCGGGCTGCACGGTTGTTGACACAATCACCAGGTATGATTTAATAACTAT
CTTTACATGTGTAAGCGGTATGCCTTGGCCCCGTGTGGCTACCATCATCC
TCATTTCAAGTCGCACTCCCCTCTTCCAGTTCTTCCACACACGTCAGACC
CCTTCCAAGCTGAAATCCCCCTCCTTTTTGGGTGGCGTGTTAAAGCGTAA
CCCTAACCTTAAGAAAGATGAAATTTACAGGTGTATTTCCATTTTCGTTC
TTCCTCCCCCTTATTTATCAACAGAGCCCTTGGCTCCCGCATCCACCACC
TCGCCCTTGGCCCCCCTTCCCAAGTGGACCACGCGCCGAGGCGGGCTTCA
AAACCCCTTTCGAAAGCATAAGCAAACTGCCCCGCCCGTCGAAAGCACGA
CTAGCAACAAGGCACCTGCAGTTACCAAGATCGATCCTGCGGTTGCCTAC
AGCACGGCGGTTCGCCGAACAATGCTTGCGGTAGGCGCCGCGTGTGCCTT
CGGGTTTGGCTTGTGGTACATCGAGGGAAAGAAGTCTGCAATGGAGTTTT
TTGCCGGGTATCTGATCGAGGAAAGTCTGAGTGTGGATAATATTTTTGTC
TTCATCATGCTGTTCGAGTACTTTAAGGTAAGAAGCGGGGAAAGGGAGGA
TGTGGTAGCGTTGACAGAGGAAAATTGCGCGAAAGGTTCATTGCTTTTAC
GCAGAATACTCCACAGTTTCGTTTCTTCACTTCTCTTTACCTCCTTTCAG
GTTCCCTTTGAATACCAATCGCGTGCCCTAACGTGGGGAATTGTCGGGGC
GGTCGCCATGCGGGGTGTGATGATCTCCGTGGGAGTGGCCGCGATTCAGA
GGTTCCGATGGGTGGTGTTAATGTTCGCCGGTATATTGCTGGGGAGCGCG
TTCAAGCTGCTGGCGGAAACGGGGCATGAAGGGGGGGAGGAGGATTTGAG
CGACAACTTGATGTTGAGGGTGGCGAAGAAATGTGTGAATGCCGTGGATG
AGTACGATGGGAACAAGTTCTTCACGAAGAGGAACGGAAAGCGATTCGCG
ACGCCCCTGTTCATGTGCTTGATTTGTATTGAACTGTCAGATTTCGTGTT
TGCCGTGGACTCCATTCCGGCGGTGTTGGGCGTGTCCAAGGTATGTGATG
CTCCCTCCCTTCTGTCTTATTCCCGGTTGTGTTTTGGAGGGTTCAATCGC
AGCATCTTGATAAGCACAAACGTCACTTCCCTGACTTTTTCCTTGCCTCC
CTCCCTCCCGTCCTCCCTCCCTCCTTCCCCTCTCTTATCCTTTAGGACCC
CCTCATTGTCTACTCCTCCAACATCTTCGCCATCATGGCCCTGCGTTCCC
TCTACACGCTGGTGGCCACTGCTGTCAACACGCTCGAGTACATCAAGCCC
TCTGTGGCGTTAGTCTTGGCCTTTGTCGGGGGCAAGATGATCGCGGAGTT
CTTTCATGTGGAAGTCCCCATCTCAGTGTCCCTTTTGGTGGTGATGTCCT
TGTTGGGTGGAGGGATTGGATTGAGCGTGTTAAAGCAGAGGTTTACTGCG
AGAAACGCGGAAACAAAGCGGTAGATGGAGAGCAGGGGGGGGGAGGGGTG
TAGTGTACATTTCTCACATTATGTGGCCAGTTGTGAGAGTGAGATCGGGA
GAGAAGGTGAGAGGGAAGGTGGGAGGGACAACTGCGTTCATTAGTTGGTC
TGCGGTGGGAGGTGAAACGGGAGTTTCGTGAGGAAATCATGAAAAGAGCA
CGATACGCTAAAAAAAATGCTCAGAGAGAACTGCTCTTCTGCGTGCGTGA
CCTCCCCACACAGGCCAACACCCTCCCAACGCAAGCTAGCATTGCATGAA
GTTAAAAAACAGATAGATCATTGACGCAAAGCGGTGCATACCTTAGCTAG
CTATTATTGACATTCCTGTGAGATTTCTCCCTACCGCCGGAGACACATTT
TGCACAATGTCTTGGCCTTGACAATTCCATCAGCAACAAAACCTCCCGCC
TCTCGATCTGGCGAGCGGTCTAAGTCGCCCGCTTATCATAAGGCTTGCCC
GTCACACCTTGCTCACGCACCAGCAACATTACCACACTGACCAGTACCCT
CACCAACTCTCTTATCACCTTAACCCTGTCAGACAGTTGCTTTCGCAGTG
GGAGGTGAGGCAACGAAGCAACGGGCAGGTGCCAG back to topCoding sequence (CDS) from alignment at scaffold_13:607378..609712- >mRNA_5514 ID=mRNA_5514|Name=jgi.p|Nanoce1779_2|592800|organism=Nannochloropsis oceanica|type=CDS|length=4536bp|location=Sequence derived from alignment at scaffold_13:607378..609712- (Nannochloropsis oceanica)
GACCCCCTCATTGTCTACTCCTCCAACATCTTCGCCATCATGGCCCTGCG
TTCCCTCTACACGCTGGTGGCCACTGCTGTCAACACGCTCGAGTACATCA
AGCCCTCTGTGGCGTTAGTCTTGGCCTTTGTCGGGGGCAAGATGATCGCG
GAGTTCTTTCATGTGGAAGTCCCCATCTCAGTGTCCCTTTTGGTGGTGAT
GTCCTTGTTGGGTGGAGGGATTGGATTGAGCGTGTTAAAGCAGAGGTTTA
CTGCGAGAAACGCGGAAACAAAGCGGTAGGTTCCCTTTGAATACCAATCG
CGTGCCCTAACGTGGGGAATTGTCGGGGCGGTCGCCATGCGGGGTGTGAT
GATCTCCGTGGGAGTGGCCGCGATTCAGAGGTTCCGATGGGTGGTGTTAA
TGTTCGCCGGTATATTGCTGGGGAGCGCGTTCAAGCTGCTGGCGGAAACG
GGGCATGAAGGGGGGGAGGAGGATTTGAGCGACAACTTGATGTTGAGGGT
GGCGAAGAAATGTGTGAATGCCGTGGATGAGTACGATGGGAACAAGTTCT
TCACGAAGAGGAACGGAAAGCGATTCGCGACGCCCCTGTTCATGTGCTTG
ATTTGTATTGAACTGTCAGATTTCGTGTTTGCCGTGGACTCCATTCCGGC
GGTGTTGGGCGTGTCCAAGAGCCCTTGGCTCCCGCATCCACCACCTCGCC
CTTGGCCCCCCTTCCCAAGTGGACCACGCGCCGAGGCGGGCTTCAAAACC
CCTTTCGAAAGCATAAGCAAACTGCCCCGCCCGTCGAAAGCACGACTAGC
AACAAGGCACCTGCAGTTACCAAGATCGATCCTGCGGTTGCCTACAGCAC
GGCGGTTCGCCGAACAATGCTTGCGGTAGGCGCCGCGTGTGCCTTCGGGT
TTGGCTTGTGGTACATCGAGGGAAAGAAGTCTGCAATGGAGTTTTTTGCC
GGGTATCTGATCGAGGAAAGTCTGAGTGTGGATAATATTTTTGTCTTCAT
CATGCTGTTCGAGTACTTTAAGATGCGCGCCTTCTATTTTTGCCTCTTAG
GCTTGGCGGCTTCTTCATGTGATGTGTCGCCTTCGTCCCTGTCAGACAGC
AGGCGGGCTGCACGGTTGTTGACACAATCACCAGGACCCCCTCATTGTCT
ACTCCTCCAACATCTTCGCCATCATGGCCCTGCGTTCCCTCTACACGCTG
GTGGCCACTGCTGTCAACACGCTCGAGTACATCAAGCCCTCTGTGGCGTT
AGTCTTGGCCTTTGTCGGGGGCAAGATGATCGCGGAGTTCTTTCATGTGG
AAGTCCCCATCTCAGTGTCCCTTTTGGTGGTGATGTCCTTGTTGGGTGGA
GGGATTGGATTGAGCGTGTTAAAGCAGAGGTTTACTGCGAGAAACGCGGA
AACAAAGCGGTAGGTTCCCTTTGAATACCAATCGCGTGCCCTAACGTGGG
GAATTGTCGGGGCGGTCGCCATGCGGGGTGTGATGATCTCCGTGGGAGTG
GCCGCGATTCAGAGGTTCCGATGGGTGGTGTTAATGTTCGCCGGTATATT
GCTGGGGAGCGCGTTCAAGCTGCTGGCGGAAACGGGGCATGAAGGGGGGG
AGGAGGATTTGAGCGACAACTTGATGTTGAGGGTGGCGAAGAAATGTGTG
AATGCCGTGGATGAGTACGATGGGAACAAGTTCTTCACGAAGAGGAACGG
AAAGCGATTCGCGACGCCCCTGTTCATGTGCTTGATTTGTATTGAACTGT
CAGATTTCGTGTTTGCCGTGGACTCCATTCCGGCGGTGTTGGGCGTGTCC
AAGAGCCCTTGGCTCCCGCATCCACCACCTCGCCCTTGGCCCCCCTTCCC
AAGTGGACCACGCGCCGAGGCGGGCTTCAAAACCCCTTTCGAAAGCATAA
GCAAACTGCCCCGCCCGTCGAAAGCACGACTAGCAACAAGGCACCTGCAG
TTACCAAGATCGATCCTGCGGTTGCCTACAGCACGGCGGTTCGCCGAACA
ATGCTTGCGGTAGGCGCCGCGTGTGCCTTCGGGTTTGGCTTGTGGTACAT
CGAGGGAAAGAAGTCTGCAATGGAGTTTTTTGCCGGGTATCTGATCGAGG
AAAGTCTGAGTGTGGATAATATTTTTGTCTTCATCATGCTGTTCGAGTAC
TTTAAGATGCGCGCCTTCTATTTTTGCCTCTTAGGCTTGGCGGCTTCTTC
ATGTGATGTGTCGCCTTCGTCCCTGTCAGACAGCAGGCGGGCTGCACGGT
TGTTGACACAATCACCAGGACCCCCTCATTGTCTACTCCTCCAACATCTT
CGCCATCATGGCCCTGCGTTCCCTCTACACGCTGGTGGCCACTGCTGTCA
ACACGCTCGAGTACATCAAGCCCTCTGTGGCGTTAGTCTTGGCCTTTGTC
GGGGGCAAGATGATCGCGGAGTTCTTTCATGTGGAAGTCCCCATCTCAGT
GTCCCTTTTGGTGGTGATGTCCTTGTTGGGTGGAGGGATTGGATTGAGCG
TGTTAAAGCAGAGGTTTACTGCGAGAAACGCGGAAACAAAGCGGTAGGTT
CCCTTTGAATACCAATCGCGTGCCCTAACGTGGGGAATTGTCGGGGCGGT
CGCCATGCGGGGTGTGATGATCTCCGTGGGAGTGGCCGCGATTCAGAGGT
TCCGATGGGTGGTGTTAATGTTCGCCGGTATATTGCTGGGGAGCGCGTTC
AAGCTGCTGGCGGAAACGGGGCATGAAGGGGGGGAGGAGGATTTGAGCGA
CAACTTGATGTTGAGGGTGGCGAAGAAATGTGTGAATGCCGTGGATGAGT
ACGATGGGAACAAGTTCTTCACGAAGAGGAACGGAAAGCGATTCGCGACG
CCCCTGTTCATGTGCTTGATTTGTATTGAACTGTCAGATTTCGTGTTTGC
CGTGGACTCCATTCCGGCGGTGTTGGGCGTGTCCAAGAGCCCTTGGCTCC
CGCATCCACCACCTCGCCCTTGGCCCCCCTTCCCAAGTGGACCACGCGCC
GAGGCGGGCTTCAAAACCCCTTTCGAAAGCATAAGCAAACTGCCCCGCCC
GTCGAAAGCACGACTAGCAACAAGGCACCTGCAGTTACCAAGATCGATCC
TGCGGTTGCCTACAGCACGGCGGTTCGCCGAACAATGCTTGCGGTAGGCG
CCGCGTGTGCCTTCGGGTTTGGCTTGTGGTACATCGAGGGAAAGAAGTCT
GCAATGGAGTTTTTTGCCGGGTATCTGATCGAGGAAAGTCTGAGTGTGGA
TAATATTTTTGTCTTCATCATGCTGTTCGAGTACTTTAAGATGCGCGCCT
TCTATTTTTGCCTCTTAGGCTTGGCGGCTTCTTCATGTGATGTGTCGCCT
TCGTCCCTGTCAGACAGCAGGCGGGCTGCACGGTTGTTGACACAATCACC
AGGACCCCCTCATTGTCTACTCCTCCAACATCTTCGCCATCATGGCCCTG
CGTTCCCTCTACACGCTGGTGGCCACTGCTGTCAACACGCTCGAGTACAT
CAAGCCCTCTGTGGCGTTAGTCTTGGCCTTTGTCGGGGGCAAGATGATCG
CGGAGTTCTTTCATGTGGAAGTCCCCATCTCAGTGTCCCTTTTGGTGGTG
ATGTCCTTGTTGGGTGGAGGGATTGGATTGAGCGTGTTAAAGCAGAGGTT
TACTGCGAGAAACGCGGAAACAAAGCGGTAGGTTCCCTTTGAATACCAAT
CGCGTGCCCTAACGTGGGGAATTGTCGGGGCGGTCGCCATGCGGGGTGTG
ATGATCTCCGTGGGAGTGGCCGCGATTCAGAGGTTCCGATGGGTGGTGTT
AATGTTCGCCGGTATATTGCTGGGGAGCGCGTTCAAGCTGCTGGCGGAAA
CGGGGCATGAAGGGGGGGAGGAGGATTTGAGCGACAACTTGATGTTGAGG
GTGGCGAAGAAATGTGTGAATGCCGTGGATGAGTACGATGGGAACAAGTT
CTTCACGAAGAGGAACGGAAAGCGATTCGCGACGCCCCTGTTCATGTGCT
TGATTTGTATTGAACTGTCAGATTTCGTGTTTGCCGTGGACTCCATTCCG
GCGGTGTTGGGCGTGTCCAAGAGCCCTTGGCTCCCGCATCCACCACCTCG
CCCTTGGCCCCCCTTCCCAAGTGGACCACGCGCCGAGGCGGGCTTCAAAA
CCCCTTTCGAAAGCATAAGCAAACTGCCCCGCCCGTCGAAAGCACGACTA
GCAACAAGGCACCTGCAGTTACCAAGATCGATCCTGCGGTTGCCTACAGC
ACGGCGGTTCGCCGAACAATGCTTGCGGTAGGCGCCGCGTGTGCCTTCGG
GTTTGGCTTGTGGTACATCGAGGGAAAGAAGTCTGCAATGGAGTTTTTTG
CCGGGTATCTGATCGAGGAAAGTCTGAGTGTGGATAATATTTTTGTCTTC
ATCATGCTGTTCGAGTACTTTAAGATGCGCGCCTTCTATTTTTGCCTCTT
AGGCTTGGCGGCTTCTTCATGTGATGTGTCGCCTTCGTCCCTGTCAGACA
GCAGGCGGGCTGCACGGTTGTTGACACAATCACCAG back to top
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