jgi.p|Nanoce1779_2|592791, mRNA_5512 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592791
Unique NamemRNA_5512
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1129
Alignment locationscaffold_13:599961..601685 -

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Properties
Property NameValue
TranscriptId592877
TrackFilteredModels2
ProteinId592791
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:599961..601685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592791gene_5512Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592791mRNA_5512-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5512CDS_5512Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5512 ID=mRNA_5512|Name=jgi.p|Nanoce1779_2|592791|organism=Nannochloropsis oceanica|type=mRNA|length=1129bp
GCTCGACGTCACGGCGGTCGGCGATGAGAGCCTCATTTGAAGCCTTCCCT
TCCCGCCTTAGCTGTCCACGACCAGCAGCGTGTGCAACTCGCCCATCAGT
AGCCCACGCATCCACCCAAACACATAGATAGGAGACAGGACTACAAGAAG
ATCCACGTCCATGCCGATGGTTGTGGCATGAGCATCATGCTGATCATCAC
CATAATCATCATCATCATCATCACCACCCTTACCACGCCGTTGCCCCTCT
TCCTTTACTCCCCTCCGTACACACCCCACAGTCAATCTGGTCGCACGAAT
CAAGCCTTTTACCACTCCCATCACCATCAGTATCCCCAGTACCAACACCA
TGGCCGCTCCACCAACCGCAAATCTAGGGGGTGCCGACGAAGAGGAGGAG
CCCCTTCATATCGACACGGGCGACCAAATGAAAGTGAAGCAAGTGATGGA
TGAAGCAGTCGTCAAAGCCATTGTAGACGCGGGATACGAAGAAAACTATT
TCTACGACAATATCAAGCTCACCCTTATGGTCGTCGCCTGTGCCTTCGCC
ATGGTCGCGCAATTCTACCCTATGCCCTTCCCTGAATCACGCCCTTTGTT
GGGAGTGTGCTGCTTGGCCTACTTCCTAGCTAGCACCGTCATCCAGCTCA
TTGTTTCTTACGCCGAGCAAGACGCGATCCTGACCACTCAGCCCTTGGAG
GGAATGAAGGAGGGGGGGTTGAGGGTGCGGACTCAATTTCCCCGGTTTCA
AGATGTGTATACGGTGATTTTGGAAGAAGTAGGAGTCAAGGAACCGCCTA
CGGTGTCGAGCAAATTTTCCATCGGCACGGTTTTTGACGAAGAAGGGAAT
TTTTACGAGGAGGGATTGGCACAGGAAGTCAAGGCGTTGGTCGACCGTTA
CCGGAAAAAACGTTGGGATGCCCCGGAGGGGAAGGGGGAGAAGAAGAAGA
CAAAGTAAGAGGGGAGGGAGGTTTGAGAGAGGGGTTGAGGAGGGGGGAGA
TGTATGTAGATGGGGCACATGCAGAAGCAGTAATGGACTTGTCGTAAGCC
GCTTTGACAGGGTAGGGTTACCAATAGAAGAAGGAAAGAAAGAGGACAAC
AGAAAGCAGGCAGGCAATCGAAACGTGAC
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protein sequence of jgi.p|Nanoce1779_2|592791

>mRNA_5512-protein ID=mRNA_5512-protein|Name=jgi.p|Nanoce1779_2|592791|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MAAPPTANLGGADEEEEPLHIDTGDQMKVKQVMDEAVVKAIVDAGYEENY
FYDNIKLTLMVVACAFAMVAQFYPMPFPESRPLLGVCCLAYFLASTVIQL
IVSYAEQDAILTTQPLEGMKEGGLRVRTQFPRFQDVYTVILEEVGVKEPP
TVSSKFSIGTVFDEEGNFYEEGLAQEVKALVDRYRKKRWDAPEGKGEKKK
TK*
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mRNA from alignment at scaffold_13:599961..601685-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5512 ID=mRNA_5512|Name=jgi.p|Nanoce1779_2|592791|organism=Nannochloropsis oceanica|type=mRNA|length=1725bp|location=Sequence derived from alignment at scaffold_13:599961..601685- (Nannochloropsis oceanica)
GCTCGACGTCACGGCGGTCGGCGATGAGAGCCTCATTTGAAGCCTTCCCT
TCCCGCCTTAGCTGTCCACGACCAGCAGCGTGTGCAACTCGCCCATCAGT
AGCCCACGCATCCACCCAAACACATAGATAGGAGACAGGACTACAAGAAG
ATCCACGTCCATGCCGATGGTTGTGGCATGAGCATCATGCTGATCATCAC
CATAATCATCATCATCATCATCACCACCCTTACCACGCCGTTGCCCCTCT
TCCTTTACTCCCCTCCGTACACACCCCACAGTCAATCTGGTCGCACGAAT
CAAGCCTTTTACCACTCCCATCACCATCAGTATCCCCAGTACCAACACCA
TGGCCGCTCCACCAACCGCAAATCTAGGGGGTGCCGACGGTAAGCGCCTG
CACCCAAATACCAGCCTCCCCACTATCCCCCCTGTCCCCTGCCCATCACT
TGCCCCATCCTGACTTGCAACGCGATACAGCATCGATTTTCAGCTTCTTA
GTTGTGCGTTTATTCCTTTTTTTTCGCTACTCTCCCTGCTGACCTCCCTC
GCACACAACAGAAGAGGAGGAGCCCCTTCATATCGACACGGGCGACCAAA
TGAAAGTGAAGCAAGTGATGGATGAAGCAGTCGTCAAAGCCATTGTAGAC
GCGGGATACGAAGGTATTGTTGAGTGTGATAAGTTGGACTGATAGCGAGC
TTTATCATCCTTGCACCGTCTCTTGTATCATCCTCCTCTCTTTGTGCGCC
CCTCTCCTTCAGTGTCTCGATCTTGCATTTGGTTGCGCGGCGATCAGCGC
TATCTACCTACGTTGAATTCTGGCTTTCCATGCCATATTAAGGTTGCACA
CCATCTGTCCTTTCACCCATCATCCTCCCCCTTCCCCCAGAAAACTATTT
CTACGACAATATCAAGCTCACCCTTATGGTCGTCGCCTGTGCCTTCGCCA
TGGTCGCGCAATTCTACCCTATGCCCTTCCCTGAATCACGCCCTTTGTTG
GGAGTGTGCTGCTTGGCCTACTTCCTAGCTAGCACCGTCATCCAGCTCAT
TGTTTCTTACGCCGAGCAAGACGCGATCCTGACCACTCAGCCCTTGGAGG
GAATGAAGGAGGGGGGGTTGAGGGTGCGGACTCAATTTCCCCGGTTTCAA
GATGTGTATACGGTGATTTTGGAAGAAGTAGGAGTCAAGGAACCGCCTAC
GGTGTCGAGTAAGTGTTGGAGAGCGAGGGAAGGGAGGGAAGGAGGGAGGG
AGGGAAGTAGGGAGGGAAGGAGGGAGGGGGGAGAAGGGATGGAGTGGGCG
TTACAATACAACATCACTCTTTCCCTCTAGGATTTCTCTATGGTGCGTTA
TTTGTCACTTTCTCATTATTTATTTCTTATGCTGTACGTCTTTTCCACCC
TACAGGCAAATTTTCCATCGGCACGGTTTTTGACGAAGAAGGGAATTTTT
ACGAGGAGGGATTGGCACAGGAAGTCAAGGCGTTGGTCGACCGTTACCGG
AAAAAACGTTGGGATGCCCCGGAGGGGAAGGGGGAGAAGAAGAAGACAAA
GTAAGAGGGGAGGGAGGTTTGAGAGAGGGGTTGAGGAGGGGGGAGATGTA
TGTAGATGGGGCACATGCAGAAGCAGTAATGGACTTGTCGTAAGCCGCTT
TGACAGGGTAGGGTTACCAATAGAAGAAGGAAAGAAAGAGGACAACAGAA
AGCAGGCAGGCAATCGAAACGTGAC
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Coding sequence (CDS) from alignment at scaffold_13:599961..601685-

>mRNA_5512 ID=mRNA_5512|Name=jgi.p|Nanoce1779_2|592791|organism=Nannochloropsis oceanica|type=CDS|length=2436bp|location=Sequence derived from alignment at scaffold_13:599961..601685- (Nannochloropsis oceanica)
GCAAATTTTCCATCGGCACGGTTTTTGACGAAGAAGGGAATTTTTACGAG
GAGGGATTGGCACAGGAAGTCAAGGCGTTGGTCGACCGTTACCGGAAAAA
ACGTTGGGATGCCCCGGAGGGGAAGGGGGAGAAGAAGAAGACAAAGTAAA
AAACTATTTCTACGACAATATCAAGCTCACCCTTATGGTCGTCGCCTGTG
CCTTCGCCATGGTCGCGCAATTCTACCCTATGCCCTTCCCTGAATCACGC
CCTTTGTTGGGAGTGTGCTGCTTGGCCTACTTCCTAGCTAGCACCGTCAT
CCAGCTCATTGTTTCTTACGCCGAGCAAGACGCGATCCTGACCACTCAGC
CCTTGGAGGGAATGAAGGAGGGGGGGTTGAGGGTGCGGACTCAATTTCCC
CGGTTTCAAGATGTGTATACGGTGATTTTGGAAGAAGTAGGAGTCAAGGA
ACCGCCTACGGTGTCGAAAGAGGAGGAGCCCCTTCATATCGACACGGGCG
ACCAAATGAAAGTGAAGCAAGTGATGGATGAAGCAGTCGTCAAAGCCATT
GTAGACGCGGGATACGAAGATGGCCGCTCCACCAACCGCAAATCTAGGGG
GTGCCGACGGCAAATTTTCCATCGGCACGGTTTTTGACGAAGAAGGGAAT
TTTTACGAGGAGGGATTGGCACAGGAAGTCAAGGCGTTGGTCGACCGTTA
CCGGAAAAAACGTTGGGATGCCCCGGAGGGGAAGGGGGAGAAGAAGAAGA
CAAAGTAAAAAACTATTTCTACGACAATATCAAGCTCACCCTTATGGTCG
TCGCCTGTGCCTTCGCCATGGTCGCGCAATTCTACCCTATGCCCTTCCCT
GAATCACGCCCTTTGTTGGGAGTGTGCTGCTTGGCCTACTTCCTAGCTAG
CACCGTCATCCAGCTCATTGTTTCTTACGCCGAGCAAGACGCGATCCTGA
CCACTCAGCCCTTGGAGGGAATGAAGGAGGGGGGGTTGAGGGTGCGGACT
CAATTTCCCCGGTTTCAAGATGTGTATACGGTGATTTTGGAAGAAGTAGG
AGTCAAGGAACCGCCTACGGTGTCGAAAGAGGAGGAGCCCCTTCATATCG
ACACGGGCGACCAAATGAAAGTGAAGCAAGTGATGGATGAAGCAGTCGTC
AAAGCCATTGTAGACGCGGGATACGAAGATGGCCGCTCCACCAACCGCAA
ATCTAGGGGGTGCCGACGGCAAATTTTCCATCGGCACGGTTTTTGACGAA
GAAGGGAATTTTTACGAGGAGGGATTGGCACAGGAAGTCAAGGCGTTGGT
CGACCGTTACCGGAAAAAACGTTGGGATGCCCCGGAGGGGAAGGGGGAGA
AGAAGAAGACAAAGTAAAAAACTATTTCTACGACAATATCAAGCTCACCC
TTATGGTCGTCGCCTGTGCCTTCGCCATGGTCGCGCAATTCTACCCTATG
CCCTTCCCTGAATCACGCCCTTTGTTGGGAGTGTGCTGCTTGGCCTACTT
CCTAGCTAGCACCGTCATCCAGCTCATTGTTTCTTACGCCGAGCAAGACG
CGATCCTGACCACTCAGCCCTTGGAGGGAATGAAGGAGGGGGGGTTGAGG
GTGCGGACTCAATTTCCCCGGTTTCAAGATGTGTATACGGTGATTTTGGA
AGAAGTAGGAGTCAAGGAACCGCCTACGGTGTCGAAAGAGGAGGAGCCCC
TTCATATCGACACGGGCGACCAAATGAAAGTGAAGCAAGTGATGGATGAA
GCAGTCGTCAAAGCCATTGTAGACGCGGGATACGAAGATGGCCGCTCCAC
CAACCGCAAATCTAGGGGGTGCCGACGGCAAATTTTCCATCGGCACGGTT
TTTGACGAAGAAGGGAATTTTTACGAGGAGGGATTGGCACAGGAAGTCAA
GGCGTTGGTCGACCGTTACCGGAAAAAACGTTGGGATGCCCCGGAGGGGA
AGGGGGAGAAGAAGAAGACAAAGTAAAAAACTATTTCTACGACAATATCA
AGCTCACCCTTATGGTCGTCGCCTGTGCCTTCGCCATGGTCGCGCAATTC
TACCCTATGCCCTTCCCTGAATCACGCCCTTTGTTGGGAGTGTGCTGCTT
GGCCTACTTCCTAGCTAGCACCGTCATCCAGCTCATTGTTTCTTACGCCG
AGCAAGACGCGATCCTGACCACTCAGCCCTTGGAGGGAATGAAGGAGGGG
GGGTTGAGGGTGCGGACTCAATTTCCCCGGTTTCAAGATGTGTATACGGT
GATTTTGGAAGAAGTAGGAGTCAAGGAACCGCCTACGGTGTCGAAAGAGG
AGGAGCCCCTTCATATCGACACGGGCGACCAAATGAAAGTGAAGCAAGTG
ATGGATGAAGCAGTCGTCAAAGCCATTGTAGACGCGGGATACGAAGATGG
CCGCTCCACCAACCGCAAATCTAGGGGGTGCCGACG
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Synonyms
Publications