jgi.p|Nanoce1779_2|592785, mRNA_5511 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592785
Unique Name	mRNA_5511
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1682
Alignment location	scaffold_13:598302..599983 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592871
Track	FilteredModels2
ProteinId	592785

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:598302..599983 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592785	gene_5511	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592785	mRNA_5511-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5511	CDS_5511	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:598302..599983+
coding sequence from alignment at scaffold_13:598302..599983+

mRNA sequence

>mRNA_5511 ID=mRNA_5511|Name=jgi.p|Nanoce1779_2|592785|organism=Nannochloropsis oceanica|type=mRNA|length=1682bp
ATGTCATTGTCTTAAACCCTTCCTCGGCATGTGGTGGCATGCTTTGACTT
GAGTTGTTGTGGTCTCATGTGGTACACGTAGGCGTAGACAGAGTTCAGCA
AAGACCTCGACGTAGCCCTTTTTTTTACTACTCGCACACGAACACAGCCC
GAACTACACGGACGATAAGTGAGGAACATTAACTCACATTCCTAGGGCAG
CACTTGGTCAGGAGCCTGCTTATGGAGAGAGTAATCTCGCGTCCAAGTTG
ACCTCCTGGCTGTTTAAGTGGATAAACCCCACGCCCCCGACCAGACCCCG
GCACAAGAACATGCTTACACCCCCAACTACTTAATCTATTTTTTACAGTT
CACCATGAAAACATTAATACACATATAGACCACAGCTGATAAGATCGAGA
AAGTAAACAGCTACACATAGACTCAACGCTGAGGATATGGATGCCGCGCG
CTATGATGAGTTTTGGGAAGAACTGAAAAAGGTATAAAGGCTTTGCGAGA
TCACCTGTGAGATTACCTGTCGAGCTATGAAGACCCCACCTCTCCCTGCC
TCCTCCTGGAGGGCCTTTGATCAAAATAAATCACTCTCATTCTTCCTCTT
TTCGCCCTTCTCGCATGTTCAGGTTATTTTCTTACCCTCCCCCCATCCAT
CTCTTCCTCTCTTCCTTTTTATCTCCCAGGCCTTAGGCAGCGCTCAATGG
AGCCGGCATCTCCTTGTCTCATCACTCCACGCTCCAAAAATAAGAGAGAC
AACAAAAGAGCAACATAATCACCACGACGACAACAACCGCAGCCAAGAGC
AAGAATACCTTCTCCTCCTCGACCTCAACTCTCACACCCTCTCCCTCCTC
ACCAGCACCACCGCCGGCTCAAGAAAAGAAGATAGGAAAGGAAGCTTCTA
TTCCGTAGTCCTTGATCCAGAAATACTACAAGCATGCCAGGAAGAGATAA
TAGAGTATGACAATATGGCCGACTTCGCTTCGGAGTTCGCAGGGGCTCTC
CAAGGGGAAAAGACCGTGAGTACACACGTGCAGATGACAAAGTCAAGAGA
AGAGAAAGGGGCCCCGCCAGGTCCTACAGCGCCTATGGTCATTGCGCTCA
GGTTTGATATAGAAGAGGAAACAATGTCGATTGCCCTGCCCTGCCTGCAG
GAAGGGATGACTCCTACCCTCCTTCCCGCCCTCTGCCCATTTTTCCATTT
CGACGCTGCCACGGGCATCGGCAGGCAGCCGGCAGCGGTGGAGGAAGGGA
AGGAGAAAGGGTGTAAGCCGATAGGAAGACAAGCCGCAGCTGCAGGACTG
ACGCGAGCGCAATCGGAGGGAGGAGGCGGGGAAGGGGGAGGAGGAGGGAG
AGGAGGAGGGAGAGGAGGAGGAGGGGGAGGGCAGCGGGTAACGCGGAGCT
TAATCCATCCCAGGCTGCAGGTACGACAGTCATTGACAGGCTCAAAGTGG
GAGGATGAGGACGAGGAAGAGAGAGAGGGCCGGAAGAGGAAGAAGAAGGG
AGAGGTGGCGGAGGAGAGCAAGGAGAAAGGGAAGGGCGGGTTAAAGCTGT
GATGGCTGCGTGTGAAGGCACAACAAAGTAATTCGAAGTATCAATGTATG
GAAAAGATAAGACTAAGACCAAAACACATGACGAGGGAAATAACAGTGTG
TAGCAATACGTCACGTTTCGATTGCCTGCCTG

protein sequence of jgi.p|Nanoce1779_2|592785

>mRNA_5511-protein ID=mRNA_5511-protein|Name=jgi.p|Nanoce1779_2|592785|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MKTPPLPASSWRAFDQNKSLSFFLFSPFSHVQVIFLPSPHPSLPLFLFIS
QALGSAQWSRHLLVSSLHAPKIRETTKEQHNHHDDNNRSQEQEYLLLLDL
NSHTLSLLTSTTAGSRKEDRKGSFYSVVLDPEILQACQEEIIEYDNMADF
ASEFAGALQGEKTVSTHVQMTKSREEKGAPPGPTAPMVIALRFDIEEETM
SIALPCLQEGMTPTLLPALCPFFHFDAATGIGRQPAAVEEGKEKGCKPIG
RQAAAAGLTRAQSEGGGGEGGGGGRGGGRGGGGGGQRVTRSLIHPRLQVR
QSLTGSKWEDEDEEEREGRKRKKKGEVAEESKEKGKGGLKL*

mRNA from alignment at scaffold_13:598302..599983+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5511 ID=mRNA_5511|Name=jgi.p|Nanoce1779_2|592785|organism=Nannochloropsis oceanica|type=mRNA|length=1682bp|location=Sequence derived from alignment at scaffold_13:598302..599983+ (Nannochloropsis oceanica)
ATGTCATTGTCTTAAACCCTTCCTCGGCATGTGGTGGCATGCTTTGACTT
GAGTTGTTGTGGTCTCATGTGGTACACGTAGGCGTAGACAGAGTTCAGCA
AAGACCTCGACGTAGCCCTTTTTTTTACTACTCGCACACGAACACAGCCC
GAACTACACGGACGATAAGTGAGGAACATTAACTCACATTCCTAGGGCAG
CACTTGGTCAGGAGCCTGCTTATGGAGAGAGTAATCTCGCGTCCAAGTTG
ACCTCCTGGCTGTTTAAGTGGATAAACCCCACGCCCCCGACCAGACCCCG
GCACAAGAACATGCTTACACCCCCAACTACTTAATCTATTTTTTACAGTT
CACCATGAAAACATTAATACACATATAGACCACAGCTGATAAGATCGAGA
AAGTAAACAGCTACACATAGACTCAACGCTGAGGATATGGATGCCGCGCG
CTATGATGAGTTTTGGGAAGAACTGAAAAAGGTATAAAGGCTTTGCGAGA
TCACCTGTGAGATTACCTGTCGAGCTATGAAGACCCCACCTCTCCCTGCC
TCCTCCTGGAGGGCCTTTGATCAAAATAAATCACTCTCATTCTTCCTCTT
TTCGCCCTTCTCGCATGTTCAGGTTATTTTCTTACCCTCCCCCCATCCAT
CTCTTCCTCTCTTCCTTTTTATCTCCCAGGCCTTAGGCAGCGCTCAATGG
AGCCGGCATCTCCTTGTCTCATCACTCCACGCTCCAAAAATAAGAGAGAC
AACAAAAGAGCAACATAATCACCACGACGACAACAACCGCAGCCAAGAGC
AAGAATACCTTCTCCTCCTCGACCTCAACTCTCACACCCTCTCCCTCCTC
ACCAGCACCACCGCCGGCTCAAGAAAAGAAGATAGGAAAGGAAGCTTCTA
TTCCGTAGTCCTTGATCCAGAAATACTACAAGCATGCCAGGAAGAGATAA
TAGAGTATGACAATATGGCCGACTTCGCTTCGGAGTTCGCAGGGGCTCTC
CAAGGGGAAAAGACCGTGAGTACACACGTGCAGATGACAAAGTCAAGAGA
AGAGAAAGGGGCCCCGCCAGGTCCTACAGCGCCTATGGTCATTGCGCTCA
GGTTTGATATAGAAGAGGAAACAATGTCGATTGCCCTGCCCTGCCTGCAG
GAAGGGATGACTCCTACCCTCCTTCCCGCCCTCTGCCCATTTTTCCATTT
CGACGCTGCCACGGGCATCGGCAGGCAGCCGGCAGCGGTGGAGGAAGGGA
AGGAGAAAGGGTGTAAGCCGATAGGAAGACAAGCCGCAGCTGCAGGACTG
ACGCGAGCGCAATCGGAGGGAGGAGGCGGGGAAGGGGGAGGAGGAGGGAG
AGGAGGAGGGAGAGGAGGAGGAGGGGGAGGGCAGCGGGTAACGCGGAGCT
TAATCCATCCCAGGCTGCAGGTACGACAGTCATTGACAGGCTCAAAGTGG
GAGGATGAGGACGAGGAAGAGAGAGAGGGCCGGAAGAGGAAGAAGAAGGG
AGAGGTGGCGGAGGAGAGCAAGGAGAAAGGGAAGGGCGGGTTAAAGCTGT
GATGGCTGCGTGTGAAGGCACAACAAAGTAATTCGAAGTATCAATGTATG
GAAAAGATAAGACTAAGACCAAAACACATGACGAGGGAAATAACAGTGTG
TAGCAATACGTCACGTTTCGATTGCCTGCCTG

Coding sequence (CDS) from alignment at scaffold_13:598302..599983+

>mRNA_5511 ID=mRNA_5511|Name=jgi.p|Nanoce1779_2|592785|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_13:598302..599983+ (Nannochloropsis oceanica)
ATGAAGACCCCACCTCTCCCTGCCTCCTCCTGGAGGGCCTTTGATCAAAA
TAAATCACTCTCATTCTTCCTCTTTTCGCCCTTCTCGCATGTTCAGGTTA
TTTTCTTACCCTCCCCCCATCCATCTCTTCCTCTCTTCCTTTTTATCTCC
CAGGCCTTAGGCAGCGCTCAATGGAGCCGGCATCTCCTTGTCTCATCACT
CCACGCTCCAAAAATAAGAGAGACAACAAAAGAGCAACATAATCACCACG
ACGACAACAACCGCAGCCAAGAGCAAGAATACCTTCTCCTCCTCGACCTC
AACTCTCACACCCTCTCCCTCCTCACCAGCACCACCGCCGGCTCAAGAAA
AGAAGATAGGAAAGGAAGCTTCTATTCCGTAGTCCTTGATCCAGAAATAC
TACAAGCATGCCAGGAAGAGATAATAGAGTATGACAATATGGCCGACTTC
GCTTCGGAGTTCGCAGGGGCTCTCCAAGGGGAAAAGACCGTGAGTACACA
CGTGCAGATGACAAAGTCAAGAGAAGAGAAAGGGGCCCCGCCAGGTCCTA
CAGCGCCTATGGTCATTGCGCTCAGGTTTGATATAGAAGAGGAAACAATG
TCGATTGCCCTGCCCTGCCTGCAGGAAGGGATGACTCCTACCCTCCTTCC
CGCCCTCTGCCCATTTTTCCATTTCGACGCTGCCACGGGCATCGGCAGGC
AGCCGGCAGCGGTGGAGGAAGGGAAGGAGAAAGGGTGTAAGCCGATAGGA
AGACAAGCCGCAGCTGCAGGACTGACGCGAGCGCAATCGGAGGGAGGAGG
CGGGGAAGGGGGAGGAGGAGGGAGAGGAGGAGGGAGAGGAGGAGGAGGGG
GAGGGCAGCGGGTAACGCGGAGCTTAATCCATCCCAGGCTGCAGGTACGA
CAGTCATTGACAGGCTCAAAGTGGGAGGATGAGGACGAGGAAGAGAGAGA
GGGCCGGAAGAGGAAGAAGAAGGGAGAGGTGGCGGAGGAGAGCAAGGAGA
AAGGGAAGGGCGGGTTAAAGCTGTGA

Synonyms

Publications