jgi.p|Nanoce1779_2|592775, mRNA_5509 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592775
Unique NamemRNA_5509
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length848
Alignment locationscaffold_13:588750..589597 -

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Properties
Property NameValue
TranscriptId592861
TrackFilteredModels2
ProteinId592775
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:588750..589597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592775gene_5509Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592775mRNA_5509-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5509CDS_5509Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5509 ID=mRNA_5509|Name=jgi.p|Nanoce1779_2|592775|organism=Nannochloropsis oceanica|type=mRNA|length=848bp
GGGGAACTGGGGTGGGCGAGTACAGCAGTGGGGAGGACGAACGCGTGTTC
GATTACCATGACGTGACTGTTTTGGATGAGGGGGGGGAGGAGGAGGAGAT
GGAGGAGGGATTGCTGGTGGAGGAATGTGTGGTAAGGGAAGAGGAACCAC
CGGCAGCGCCAAGGAGGGGGAGGTCGGGAAGGAAGGCGACTTCCTCTTCG
GCGTCCTATTTTAAGTTGTCGAGTAATACAGCCACAGCCAGGAAGAACAG
GACGGAAGGTGCTGCAGCTACTGCTGCAGCGGCTCCTGCCTCCGCTTGTC
CTATCCCTTCGGCCGCTGCTTTGCCTCCTGCTGCCAGTCACTTCCGTCCT
CCATCTCTCTACCTGTCCACCCTCTCCTCCTCGCTTCCGAACCAGGCTTT
GTTTACCAGTACCAAGACCACGACTCCTCACGCCTTGCCCATTGCGACTA
CGGCTTCAAAAAGGGGGAAGGCAAGCATAGTTAAGCACAACACTCTCACC
ACCGACGAGAGCAGTGGCAACGGCAGTGGCAGGCAGTATCGAGAAAGTCA
CGTTGGTGGTGAGGTGGTGGCGGTGGAGGATGAGGAAGGACGGAAAACTG
GTCTCCAGATTCCATCAAAAAAGGTGTGGAACCGCCTCAGTCGCAGTATC
TGTGCTCGAAGGCCATACAATGACAGTCAAGATGATGTGTTTGCGGCGGG
GGGAAGGAGCAGCAGTATGGGGGGGAGGAGCAGCAAGAGCAGTAGCACTG
GGAGCAGGCTGAGTCTTGACGAGCTGCTCACAAGCTTAGGCTTAAAAGAG
GAGGAAAGTGGATAAGGACTAGGACGATTGTGATGAGGAGGATGACTG
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protein sequence of jgi.p|Nanoce1779_2|592775

>mRNA_5509-protein ID=mRNA_5509-protein|Name=jgi.p|Nanoce1779_2|592775|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MEEGLLVEECVVREEEPPAAPRRGRSGRKATSSSASYFKLSSNTATARKN
RTEGAAATAAAAPASACPIPSAAALPPAASHFRPPSLYLSTLSSSLPNQA
LFTSTKTTTPHALPIATTASKRGKASIVKHNTLTTDESSGNGSGRQYRES
HVGGEVVAVEDEEGRKTGLQIPSKKVWNRLSRSICARRPYNDSQDDVFAA
GGRSSSMGGRSSKSSSTGSRLSLDELLTSLGLKEEESG*
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mRNA from alignment at scaffold_13:588750..589597-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5509 ID=mRNA_5509|Name=jgi.p|Nanoce1779_2|592775|organism=Nannochloropsis oceanica|type=mRNA|length=848bp|location=Sequence derived from alignment at scaffold_13:588750..589597- (Nannochloropsis oceanica)
GGGGAACTGGGGTGGGCGAGTACAGCAGTGGGGAGGACGAACGCGTGTTC
GATTACCATGACGTGACTGTTTTGGATGAGGGGGGGGAGGAGGAGGAGAT
GGAGGAGGGATTGCTGGTGGAGGAATGTGTGGTAAGGGAAGAGGAACCAC
CGGCAGCGCCAAGGAGGGGGAGGTCGGGAAGGAAGGCGACTTCCTCTTCG
GCGTCCTATTTTAAGTTGTCGAGTAATACAGCCACAGCCAGGAAGAACAG
GACGGAAGGTGCTGCAGCTACTGCTGCAGCGGCTCCTGCCTCCGCTTGTC
CTATCCCTTCGGCCGCTGCTTTGCCTCCTGCTGCCAGTCACTTCCGTCCT
CCATCTCTCTACCTGTCCACCCTCTCCTCCTCGCTTCCGAACCAGGCTTT
GTTTACCAGTACCAAGACCACGACTCCTCACGCCTTGCCCATTGCGACTA
CGGCTTCAAAAAGGGGGAAGGCAAGCATAGTTAAGCACAACACTCTCACC
ACCGACGAGAGCAGTGGCAACGGCAGTGGCAGGCAGTATCGAGAAAGTCA
CGTTGGTGGTGAGGTGGTGGCGGTGGAGGATGAGGAAGGACGGAAAACTG
GTCTCCAGATTCCATCAAAAAAGGTGTGGAACCGCCTCAGTCGCAGTATC
TGTGCTCGAAGGCCATACAATGACAGTCAAGATGATGTGTTTGCGGCGGG
GGGAAGGAGCAGCAGTATGGGGGGGAGGAGCAGCAAGAGCAGTAGCACTG
GGAGCAGGCTGAGTCTTGACGAGCTGCTCACAAGCTTAGGCTTAAAAGAG
GAGGAAAGTGGATAAGGACTAGGACGATTGTGATGAGGAGGATGACTG
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Coding sequence (CDS) from alignment at scaffold_13:588750..589597-

>mRNA_5509 ID=mRNA_5509|Name=jgi.p|Nanoce1779_2|592775|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at scaffold_13:588750..589597- (Nannochloropsis oceanica)
ATGGAGGAGGGATTGCTGGTGGAGGAATGTGTGGTAAGGGAAGAGGAACC
ACCGGCAGCGCCAAGGAGGGGGAGGTCGGGAAGGAAGGCGACTTCCTCTT
CGGCGTCCTATTTTAAGTTGTCGAGTAATACAGCCACAGCCAGGAAGAAC
AGGACGGAAGGTGCTGCAGCTACTGCTGCAGCGGCTCCTGCCTCCGCTTG
TCCTATCCCTTCGGCCGCTGCTTTGCCTCCTGCTGCCAGTCACTTCCGTC
CTCCATCTCTCTACCTGTCCACCCTCTCCTCCTCGCTTCCGAACCAGGCT
TTGTTTACCAGTACCAAGACCACGACTCCTCACGCCTTGCCCATTGCGAC
TACGGCTTCAAAAAGGGGGAAGGCAAGCATAGTTAAGCACAACACTCTCA
CCACCGACGAGAGCAGTGGCAACGGCAGTGGCAGGCAGTATCGAGAAAGT
CACGTTGGTGGTGAGGTGGTGGCGGTGGAGGATGAGGAAGGACGGAAAAC
TGGTCTCCAGATTCCATCAAAAAAGGTGTGGAACCGCCTCAGTCGCAGTA
TCTGTGCTCGAAGGCCATACAATGACAGTCAAGATGATGTGTTTGCGGCG
GGGGGAAGGAGCAGCAGTATGGGGGGGAGGAGCAGCAAGAGCAGTAGCAC
TGGGAGCAGGCTGAGTCTTGACGAGCTGCTCACAAGCTTAGGCTTAAAAG
AGGAGGAAAGTGGATAA
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Synonyms
Publications