Properties
| Property Name | Value |
|---|
| TranscriptId | 592859 |
| Track | FilteredModels2 |
| ProteinId | 592773 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:586320..588633 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5508 ID=mRNA_5508|Name=jgi.p|Nanoce1779_2|592773|organism=Nannochloropsis oceanica|type=mRNA|length=2081bp
ATAATTTATCGCATCTCTAAATTATGCTTTTTGGCTGTGTTGGTCATTTT
CCTTCTCCAGTGCTTATCAAATGCGAGGACACTAATTCGACTCCATGGAA
GGGGTTCTGGTGGGGAGGTTGGTCGTGGAAACCAAGAAAAGACCATACAA
CACACGATAACGAAGCAACAGGCAGAGGCCTTGAACATTTATCAAGCTTA
AAAGGTCATGCACATTGTCCATACGACTTGAAAGGGATAAAATTTTGGGC
ATGAATTTAGAGTACAAGTATGAGCTGTGGCTCAACGGGTGGTGGCCACA
CCCTTTCCACGGAATCAGAACATACAACCCCAGCATCACCACGAGCATTG
GAAGCAGCACGATTGTCGGAAGGCTCGCGAAAATTGGCAATGCGGACCAA
GCAAGTTTCTTGGCTTCCCACTCTCCAACGCTCTCTTATCGAACAACATT
TAAGCTACACCATACACCCCACAACGCGCGCGACACAGGCAGCCACTCAA
AAAATAACCATGGCTGACGACAAGAATAACACGGAGGCGAAAGAGGCGAG
TCCCTTTGCCAACACCACCTTCTCCTTTACGGCCCCTCAAGGTGGGGCCT
CTGCCCCTTTCCCCAATTTGGCCGGATTCAGCCAGGCCTTGGCTTCGGCA
GCAGAGGGTGCACGGGAGGAGGATGACGAGCCGCTTGCGCCCGAAGTACA
GGTTAGAAAAAAATAGCCTCGGTGGTGGTATGTACAGACGGCTGGCAAGT
GTAGCGTTTATGCAGGAGTACGGGGACGGCTTCGGAATCACTGATCTTCA
CGTCATGTCTCTCGTCACATTTGTGTTTTAATCGCTCACTCACCACATTC
CATCTACCGCACACATCAAACCCTTCCGTTTTTATTTTTTTTAAGGTCCG
TATTGACTACCTGAAGAACTTGCAAGAGCAACGTGACGAGTTCATGAAGG
CCTTCCACGAGGAACGGAAAGCCCTGGTAAAGAAATATGAGGCGCTTTCT
GCCCCCTTGCTCGACAAACGCCGCGCCATCCTGTCGGGGGATGTCGACGT
GGAGAAGAAGGAGGAGGCCTGGGAGACGATTGCGAAGGAAGGCGGCGAGG
GAGGCGACGTAAAGGAGGCGGGAGTTCCTCATTTTTGGTTGCAGGCCATG
GTGAACAGTCGCTTGTTGCGAGGCATGATCGAGGAGGATGACGTGCCGGC
ACTTAAATTTTTGACAGACATTCAGTGTGCGGATAAAGAGGATGGGACAG
GCTTTCAGTTGGATTTCCACTTCGCCCCTAACCCTTACTTTACGAATGCG
GTATTGTCCAAGAGTTATGTCGTGCCCAACCTAATGGAGGATGAAGACGC
CATGTTGGAGTCTACTGAAGGGACGACAATCAATTGGACGTCAACCAAGA
AGAATCTTTGTGTGGAGGAGAAGAGGATGAAACCCAAAGGGAAGAGCCGT
GGAGGTGTGGTGCTCAAGCAGGTGAAGAAGGATAGTTTTTTCCATTGGTT
TACGGCAGTTAATATACCCGAGAGCCCGGAAGGGGTGGACGAGGAGGAGT
ATGAGGAGTTGATGGAACAGCTTGACCTAGACTATGCCGTCGCCTCTACG
CTACGTGAGGAAATCGTGCCGGAGGCCATCAAGTGGTACCTCGGGGAGGG
AGATGATGAAGAGAGCGAGGATGGTGATTACGAGGAGGAGAGTTCTGAGG
AGAGTGAAAGCGACCCGGAAAGCAGTGACGACGAGCCGCCGCCGCAGCCG
GCCGGAGGACGGTATCCTCGTCAGGCGGGGCGGCCGCGGCGTGGTGGGCG
TTAGAACGCTTGTGGAAGCTGTGACAGCGGAGGATAGGGGAGAAATACAT
TTAGCTTTGAAACAATCAAGATTTGTTTTTACACTCGCATGCGAGGCGGC
CACAAGTACAGCAGCAGAAGCATCAGCCAAAAAAAAAACAAGCAGAGGGA
AGGGGGAAAAGAGAAGGATAAAGAAAGGGAATGGGCAGGGCAGAGATGTA
GATGGCCAAGGCCAAAGAAAAATTGCGATTATATTCTCAATCATCATCTA
CTAGAAGAAAGAATTACACCATTGGTCGACA back to topprotein sequence of jgi.p|Nanoce1779_2|592773 >mRNA_5508-protein ID=mRNA_5508-protein|Name=jgi.p|Nanoce1779_2|592773|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MKAFHEERKALVKKYEALSAPLLDKRRAILSGDVDVEKKEEAWETIAKEG
GEGGDVKEAGVPHFWLQAMVNSRLLRGMIEEDDVPALKFLTDIQCADKED
GTGFQLDFHFAPNPYFTNAVLSKSYVVPNLMEDEDAMLESTEGTTINWTS
TKKNLCVEEKRMKPKGKSRGGVVLKQVKKDSFFHWFTAVNIPESPEGVDE
EEYEELMEQLDLDYAVASTLREEIVPEAIKWYLGEGDDEESEDGDYEEES
SEESESDPESSDDEPPPQPAGGRYPRQAGRPRRGGR* back to topmRNA from alignment at scaffold_13:586320..588633- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5508 ID=mRNA_5508|Name=jgi.p|Nanoce1779_2|592773|organism=Nannochloropsis oceanica|type=mRNA|length=2314bp|location=Sequence derived from alignment at scaffold_13:586320..588633- (Nannochloropsis oceanica)
ATAATTTATCGCATCTCTAAATTATGCTTTTTGGCTGTGTTGGTCATTTT
CCTTCTCCAGTGCTTATCAAATGCGAGGACACTAATTCGACTCCATGGAA
GGGGTTCTGGTGGGGAGGTTGGTCGTGGAAACCAAGAAAAGACCATACAA
CACACGATAACGAAGCAACAGGCAGAGGCCTTGAACATTTATCAAGCTTA
AAAGGTCATGCACATTGTCCATACGACTTGAAAGGGATAAAATTTTGGGC
ATGAATTTAGAGTACAAGTATGAGCTGTGGCTCAACGGGTGGTGGCCACA
CCCTTTCCACGGAATCAGAACATACAACCCCAGCATCACCACGAGCATTG
GAAGCAGCACGATTGTCGGAAGGCTCGCGAAAATTGGCAATGCGGACCAA
GCAAGTTTCTTGGCTTCCCACTCTCCAACGCTCTCTTATCGAACAACATT
TAAGCTACACCATACACCCCACAACGCGCGCGACACAGGCAGCCACTCAA
AAAATAACCATGGCTGACGACAAGAATAACACGGAGGCGAAAGAGGCGAG
TCCCTTTGCCAACACCACCTTCTCCTTTACGGCCCCTCAAGGTGGGGCCT
CTGCCCCTTTCCCCAATTTGGCCGGATTCAGCCAGGCCTTGGCTTCGGCA
GCAGAGGGTGCACGGGAGGAGGATGACGAGCCGCTTGCGCCCGAAGTACA
GGTTAGAAAAAAATAGCCTCGGTGGTGGTATGTACAGACGGCTGGCAAGT
GTAGCGTTTATGCAGGAGTACGGGGACGGCTTCGGAATCACTGATCTTCA
CGTCATGTCTCTCGTCACATTTGTGTTTTAATCGCTCACTCACCACATTC
CATCTACCGCACACATCAAACCCTTCCGTTTTTATTTTTTTTAAGGTCCG
TATTGACTACCTGAAGAACTTGCAAGAGCAACGTGACGAGTTCATGAAGG
CCTTCCACGAGGAACGGAAAGCCCTGGTAAAGAAATATGAGGCGCTTTCT
GCCCCCTTGCTCGACAAACGCCGCGCCATCCTGTCGGGGGATGTCGACGT
GGAGAAGAAGGAGGAGGCCTGGGAGACGATTGCGAAGGAAGGCGGCGAGG
GAGGCGACGTAAAGGAGGCGGGAGTTCCTCATTTTTGGTTGCAGGCCATG
GTGAACAGTCGCTTGTTGCGAGGCATGATCGAGGAGGATGACGTGCCGGC
ACTTAAATTTTTGACAGACATTCAGTGTGCGGATAAAGAGGATGGGACAG
GCTTTCAGTTGGATTTCCACTTCGCCCCTAACCCTTACTTTACGAATGCG
GTATTGTCCAAGAGTTATGTCGTGCCCAACCTAATGGAGGATGAAGACGC
CATGTTGGAGTCTACTGAAGGGACGACAATCAATTGGACGTCAACCAAGA
AGAATCTTTGTGTGGAGGAGAAGAGGATGAAACCCAAAGGGAAGAGCCGT
GGAGGTGTGGTGCTCAAGCAGGTGAAGAAGGATAGTTTTTTCCATTGGTT
TACGGCAGTTAATATACCCGAGAGCCCGGAAGGGGTGGACGAGGAGGAGT
ATGAGGAGTTGATGGAACAGGTGCGAGTGGGGAGGGGAGGAAGGGAGGAT
GTAAAGGGATAATTTTGTATAGTGAAATGCTCACTTTTTCTTTTTTTCCC
CAACCACCAGCTTGACCTAGACTATGCCGTCGCCTCTACGCTACGTGAGG
AAATCGTGCCGGAGGCCATCAAGTGGTACCTCGGGGAGGGAGATGATGAA
GAGAGCGAGGATGGTGATTACGAGGAGGAGAGTTCTGAGGAGAGTGAAAG
CGACCCGGAAAGCAGTGACGACGAGCCGCCGCCGCAGCCGGTACGTGGAT
GGCGAGGAAATTGAGTGGGAAAGGGAGGAAGGGGTGGGGGTATGAGGATG
GAGAGAGAGGGAAGACGACTCTTCGAGGGCTAAATAGTACTATTGCACTT
CAATTCTACATCTCGATACTAACATATCAACAGGCCGGAGGACGGTATCC
TCGTCAGGCGGGGCGGCCGCGGCGTGGTGGGCGTTAGAACGCTTGTGGAA
GCTGTGACAGCGGAGGATAGGGGAGAAATACATTTAGCTTTGAAACAATC
AAGATTTGTTTTTACACTCGCATGCGAGGCGGCCACAAGTACAGCAGCAG
AAGCATCAGCCAAAAAAAAAACAAGCAGAGGGAAGGGGGAAAAGAGAAGG
ATAAAGAAAGGGAATGGGCAGGGCAGAGATGTAGATGGCCAAGGCCAAAG
AAAAATTGCGATTATATTCTCAATCATCATCTACTAGAAGAAAGAATTAC
ACCATTGGTCGACA back to topCoding sequence (CDS) from alignment at scaffold_13:586320..588633- >mRNA_5508 ID=mRNA_5508|Name=jgi.p|Nanoce1779_2|592773|organism=Nannochloropsis oceanica|type=CDS|length=2583bp|location=Sequence derived from alignment at scaffold_13:586320..588633- (Nannochloropsis oceanica)
GCCGGAGGACGGTATCCTCGTCAGGCGGGGCGGCCGCGGCGTGGTGGGCG
TTAGCTTGACCTAGACTATGCCGTCGCCTCTACGCTACGTGAGGAAATCG
TGCCGGAGGCCATCAAGTGGTACCTCGGGGAGGGAGATGATGAAGAGAGC
GAGGATGGTGATTACGAGGAGGAGAGTTCTGAGGAGAGTGAAAGCGACCC
GGAAAGCAGTGACGACGAGCCGCCGCCGCAGCCGATGAAGGCCTTCCACG
AGGAACGGAAAGCCCTGGTAAAGAAATATGAGGCGCTTTCTGCCCCCTTG
CTCGACAAACGCCGCGCCATCCTGTCGGGGGATGTCGACGTGGAGAAGAA
GGAGGAGGCCTGGGAGACGATTGCGAAGGAAGGCGGCGAGGGAGGCGACG
TAAAGGAGGCGGGAGTTCCTCATTTTTGGTTGCAGGCCATGGTGAACAGT
CGCTTGTTGCGAGGCATGATCGAGGAGGATGACGTGCCGGCACTTAAATT
TTTGACAGACATTCAGTGTGCGGATAAAGAGGATGGGACAGGCTTTCAGT
TGGATTTCCACTTCGCCCCTAACCCTTACTTTACGAATGCGGTATTGTCC
AAGAGTTATGTCGTGCCCAACCTAATGGAGGATGAAGACGCCATGTTGGA
GTCTACTGAAGGGACGACAATCAATTGGACGTCAACCAAGAAGAATCTTT
GTGTGGAGGAGAAGAGGATGAAACCCAAAGGGAAGAGCCGTGGAGGTGTG
GTGCTCAAGCAGGTGAAGAAGGATAGTTTTTTCCATTGGTTTACGGCAGT
TAATATACCCGAGAGCCCGGAAGGGGTGGACGAGGAGGAGTATGAGGAGT
TGATGGAACAGGCCGGAGGACGGTATCCTCGTCAGGCGGGGCGGCCGCGG
CGTGGTGGGCGTTAGCTTGACCTAGACTATGCCGTCGCCTCTACGCTACG
TGAGGAAATCGTGCCGGAGGCCATCAAGTGGTACCTCGGGGAGGGAGATG
ATGAAGAGAGCGAGGATGGTGATTACGAGGAGGAGAGTTCTGAGGAGAGT
GAAAGCGACCCGGAAAGCAGTGACGACGAGCCGCCGCCGCAGCCGATGAA
GGCCTTCCACGAGGAACGGAAAGCCCTGGTAAAGAAATATGAGGCGCTTT
CTGCCCCCTTGCTCGACAAACGCCGCGCCATCCTGTCGGGGGATGTCGAC
GTGGAGAAGAAGGAGGAGGCCTGGGAGACGATTGCGAAGGAAGGCGGCGA
GGGAGGCGACGTAAAGGAGGCGGGAGTTCCTCATTTTTGGTTGCAGGCCA
TGGTGAACAGTCGCTTGTTGCGAGGCATGATCGAGGAGGATGACGTGCCG
GCACTTAAATTTTTGACAGACATTCAGTGTGCGGATAAAGAGGATGGGAC
AGGCTTTCAGTTGGATTTCCACTTCGCCCCTAACCCTTACTTTACGAATG
CGGTATTGTCCAAGAGTTATGTCGTGCCCAACCTAATGGAGGATGAAGAC
GCCATGTTGGAGTCTACTGAAGGGACGACAATCAATTGGACGTCAACCAA
GAAGAATCTTTGTGTGGAGGAGAAGAGGATGAAACCCAAAGGGAAGAGCC
GTGGAGGTGTGGTGCTCAAGCAGGTGAAGAAGGATAGTTTTTTCCATTGG
TTTACGGCAGTTAATATACCCGAGAGCCCGGAAGGGGTGGACGAGGAGGA
GTATGAGGAGTTGATGGAACAGGCCGGAGGACGGTATCCTCGTCAGGCGG
GGCGGCCGCGGCGTGGTGGGCGTTAGCTTGACCTAGACTATGCCGTCGCC
TCTACGCTACGTGAGGAAATCGTGCCGGAGGCCATCAAGTGGTACCTCGG
GGAGGGAGATGATGAAGAGAGCGAGGATGGTGATTACGAGGAGGAGAGTT
CTGAGGAGAGTGAAAGCGACCCGGAAAGCAGTGACGACGAGCCGCCGCCG
CAGCCGATGAAGGCCTTCCACGAGGAACGGAAAGCCCTGGTAAAGAAATA
TGAGGCGCTTTCTGCCCCCTTGCTCGACAAACGCCGCGCCATCCTGTCGG
GGGATGTCGACGTGGAGAAGAAGGAGGAGGCCTGGGAGACGATTGCGAAG
GAAGGCGGCGAGGGAGGCGACGTAAAGGAGGCGGGAGTTCCTCATTTTTG
GTTGCAGGCCATGGTGAACAGTCGCTTGTTGCGAGGCATGATCGAGGAGG
ATGACGTGCCGGCACTTAAATTTTTGACAGACATTCAGTGTGCGGATAAA
GAGGATGGGACAGGCTTTCAGTTGGATTTCCACTTCGCCCCTAACCCTTA
CTTTACGAATGCGGTATTGTCCAAGAGTTATGTCGTGCCCAACCTAATGG
AGGATGAAGACGCCATGTTGGAGTCTACTGAAGGGACGACAATCAATTGG
ACGTCAACCAAGAAGAATCTTTGTGTGGAGGAGAAGAGGATGAAACCCAA
AGGGAAGAGCCGTGGAGGTGTGGTGCTCAAGCAGGTGAAGAAGGATAGTT
TTTTCCATTGGTTTACGGCAGTTAATATACCCGAGAGCCCGGAAGGGGTG
GACGAGGAGGAGTATGAGGAGTTGATGGAACAG back to top
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