jgi.p|Nanoce1779_2|592770, mRNA_5507 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592770
Unique NamemRNA_5507
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1727
Alignment locationscaffold_13:584193..586053 -

Link to JBrowse

Properties
Property NameValue
TranscriptId592856
TrackFilteredModels2
ProteinId592770
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:584193..586053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592770gene_5507Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592770mRNA_5507-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5507CDS_5507Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5507 ID=mRNA_5507|Name=jgi.p|Nanoce1779_2|592770|organism=Nannochloropsis oceanica|type=mRNA|length=1727bp
ACAGGACGGACACCAAAGCCGAACGCCTCGCCCCCGTCTTCCCGCTTCCC
CTTGATTGTATCGCGTCACACGGAAAGGGTAAGAAGTTTTCCAAGCAGCG
GTCGCGGAGTGCGGACAGAAGAGAAGCACGGGTTCAGTCAGCAAGCGACA
ATGGTGCTCATACCCACAGAAGAAACTCACAGGACTCGGGAGGGAGCCCC
ATCGGGGACGAACGAGGACACCAAGGCAATGCTTACGATGACAGCAACAG
TGCTTGGTAAGCTCAAAGAACCCTTTACTACGCAGCGCCCATCCGTCCGC
ATCCTGGAGTCGCCGTCGCTTCCTTCTTCCATTCCCCTACATCTGCCTTT
GCCGGAGCTCACTGATTCGGTCAAAAGCACCGCAAGCAGCCGTTTGTCGA
TCAATCGAGGCGGCAGTACAGCAAACTACACTCCTTTGCAGCGCTGCCAC
ACCGATATACCTCTAACGGGTGGCAACGCCATTGCTTCACCGCATTCTGA
CATAGCGGCTCTCAGTGACATTCATCGATTAGCTCTGCTAGAAGCCGCTA
CTGCCGGTCCTGTCCCGGCAGAAACGAGCGGTGAAGGAGAAGGAGAACAG
ATGAATGAGAAGAGTTCCAAGTCGTTCTCATCGTCGATCGTGGCACCTCT
GACACCGAGCATTGACTCGACACGGGAAGGTGGCTCACTGATGTCGCCGA
CATGGGTGAGAGAGGTGGTGAACGGTGAGGTGTATACACAAGGCACGGCA
AACGCATCGTCCTCTTATACATGTAGCAGTCAGGCCTGCTCTCTCACAAT
GACTTCGCTGTCGCCCAGCGCAGATCTGCAGAGTAAGGAGCATGAAGAGG
GCGAGGGCGTTGAGGAGGAAAAAGAGGGGAATAGCAGTAGCACATATATT
TCAAAGTCTTATCACGCCACAGCCTCGAACACTCTCCCGGTGATTGAAAC
TACAGCTACATGTCCTCCTTCCATCCAGTCTGAAACAGCAGCAGTCGCAC
CAGAACCACCGTCTACTGGATCCGGGCAACGAATCAAGCGTTTGCTGCGT
CTTAACTTTGACGAAGCTCAGTCTCACACCCTACCCACCAGCGGCAATAC
CGGTCACAAGGCATCTCCAACCGCGTTCACCAACACCGGCAGCAATCGCA
CCGTTTATATGGACGATCGAAGCGGGATGACGATCCTCCAAATGTCAGAC
GGAGACATTGTCCGTTTCGAGGACGTGCAACGAAAAGACGGGCGCATTAC
GGCCCACATCCAGGTCGCTCATCGCTTTGCCATCGGCAGCAAGGCACCAC
CACAACAATCACGCCCATGGCAACGACCCGCAGAATCTCTCTGCATCAGG
GCACACGACATCCGTCAGCCACTCCCATATGAGGGACGGCAAGAACAACA
ACAGCCACCACCACCACAAGAAACTAAATCTCTGCCTTTCAACCTCCTAC
CCGCCCCCCGGCGGGCTCATTGACGACATGGGCGACAACCTGCTCGAGCT
CGGTTTTCTGGGGCGTGGTGCTGGCTCCATTGAGGTGGTTAAAGCTCTAC
ATTTCCCTTCAATGCGAATGGTGGCCGTCAAAAAGGTCCCGATTGACAAT
CAAGCGAAGTTAAGTCAAGCTATACACGAGCTTGAACAGTTAATGGGCAA
CCAAGTCACAATCAGGGAGCGAATTGCCGATGATTCCACCAGGGTCGATC
CCAATCGGTCTTCGCGCATGCAGGACG
back to top

protein sequence of jgi.p|Nanoce1779_2|592770

>mRNA_5507-protein ID=mRNA_5507-protein|Name=jgi.p|Nanoce1779_2|592770|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp
MVLIPTEETHRTREGAPSGTNEDTKAMLTMTATVLGKLKEPFTTQRPSVR
ILESPSLPSSIPLHLPLPELTDSVKSTASSRLSINRGGSTANYTPLQRCH
TDIPLTGGNAIASPHSDIAALSDIHRLALLEAATAGPVPAETSGEGEGEQ
MNEKSSKSFSSSIVAPLTPSIDSTREGGSLMSPTWVREVVNGEVYTQGTA
NASSSYTCSSQACSLTMTSLSPSADLQSKEHEEGEGVEEEKEGNSSSTYI
SKSYHATASNTLPVIETTATCPPSIQSETAAVAPEPPSTGSGQRIKRLLR
LNFDEAQSHTLPTSGNTGHKASPTAFTNTGSNRTVYMDDRSGMTILQMSD
GDIVRFEDVQRKDGRITAHIQVAHRFAIGSKAPPQQSRPWQRPAESLCIR
AHDIRQPLPYEGRQEQQQPPPPQETKSLPFNLLPAPRRAH*
back to top

mRNA from alignment at scaffold_13:584193..586053-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5507 ID=mRNA_5507|Name=jgi.p|Nanoce1779_2|592770|organism=Nannochloropsis oceanica|type=mRNA|length=1861bp|location=Sequence derived from alignment at scaffold_13:584193..586053- (Nannochloropsis oceanica)
ACAGGACGGACACCAAAGCCGAACGCCTCGCCCCCGTCTTCCCGCTTCCC
CTTGATTGTATCGCGTCACACGGAAAGGGTAAGAAGTTTTCCAAGCAGCG
GTCGCGGAGTGCGGACAGAAGAGAAGCACGGGTTCAGTCAGCAAGCGACA
ATGGTGCTCATACCCACAGAAGAAACTCACAGGACTCGGGAGGGAGCCCC
ATCGGGGACGAACGAGGACACCAAGGCAATGCTTACGATGACAGCAACAG
TGCTTGGTAAGCTCAAAGAACCCTTTACTACGCAGCGCCCATCCGTCCGC
ATCCTGGAGTCGCCGTCGCTTCCTTCTTCCATTCCCCTACATCTGCCTTT
GCCGGAGCTCACTGATTCGGTCAAAAGCACCGCAAGCAGCCGTTTGTCGA
TCAATCGAGGCGGCAGTACAGCAAACTACACTCCTTTGCAGCGCTGCCAC
ACCGATATACCTCTAACGGGTGGCAACGCCATTGCTTCACCGCATTCTGA
CATAGCGGCTCTCAGTGACATTCATCGATTAGCTCTGCTAGAAGCCGCTA
CTGCCGGTCCTGTCCCGGCAGAAACGAGCGGTGAAGGAGAAGGAGAACAG
ATGAATGAGAAGAGTTCCAAGTCGTTCTCATCGTCGATCGTGGCACCTCT
GACACCGAGCATTGACTCGACACGGGAAGGTGGCTCACTGATGTCGCCGA
CATGGGTGAGAGAGGTGGTGAACGGTGAGGTGTATACACAAGGCACGGCA
AACGCATCGTCCTCTTATACATGTAGCAGTCAGGCCTGCTCTCTCACAAT
GACTTCGCTGTCGCCCAGCGCAGATCTGCAGAGTAAGGAGCATGAAGAGG
GCGAGGGCGTTGAGGAGGAAAAAGAGGGGAATAGCAGTAGCACATATATT
TCAAAGTCTTATCACGCCACAGCCTCGAACACTCTCCCGGTGATTGAAAC
TACAGCTACATGTCCTCCTTCCATCCAGTCTGAAACAGCAGCAGTCGCAC
CAGAACCACCGTCTACTGGATCCGGGCAACGAATCAAGCGTTTGCTGCGT
CTTAACTTTGACGAAGCTCAGTCTCACACCCTACCCACCAGCGGCAATAC
CGGTCACAAGGCATCTCCAACCGCGTTCACCAACACCGGCAGCAATCGCA
CCGTTTATATGGACGATCGAAGCGGGATGACGATCCTCCAAATGTCAGAC
GGAGACATTGTCCGTTTCGAGGACGTGCAACGAAAAGACGGGCGCATTAC
GGCCCACATCCAGGTCGCTCATCGCTTTGCCATCGGCAGCAAGGGTATGT
ACACCTATCCAGCCTCTACCTTTGACAGAAGCAACACTAGTTATCGCAGC
AGCCTGGAACGCGGGTCCCCGCTGCACCCGCACCTCAATCCTCCTCGAGC
CCACCCCCACCTCCTTCCCACCCCCCAGCACCACCACAACAATCACGCCC
ATGGCAACGACCCGCAGAATCTCTCTGCATCAGGGCACACGACATCCGTC
AGCCACTCCCATATGAGGGACGGCAAGAACAACAACAGCCACCACCACCA
CAAGAAACTAAATCTCTGCCTTTCAACCTCCTACCCGCCCCCCGGCGGGC
TCATTGACGACATGGGCGACAACCTGCTCGAGCTCGGTTTTCTGGGGCGT
GGTGCTGGCTCCATTGAGGTGGTTAAAGCTCTACATTTCCCTTCAATGCG
AATGGTGGCCGTCAAAAAGGTCCCGATTGACAATCAAGCGAAGTTAAGTC
AAGCTATACACGAGCTTGAACAGTTAATGGGCAACCAAGTCACAATCAGG
GAGCGAATTGCCGATGATTCCACCAGGGTCGATCCCAATCGGTCTTCGCG
CATGCAGGACG
back to top

Coding sequence (CDS) from alignment at scaffold_13:584193..586053-

>mRNA_5507 ID=mRNA_5507|Name=jgi.p|Nanoce1779_2|592770|organism=Nannochloropsis oceanica|type=CDS|length=2646bp|location=Sequence derived from alignment at scaffold_13:584193..586053- (Nannochloropsis oceanica)
CACCACCACAACAATCACGCCCATGGCAACGACCCGCAGAATCTCTCTGC
ATCAGGGCACACGACATCCGTCAGCCACTCCCATATGAGGGACGGCAAGA
ACAACAACAGCCACCACCACCACAAGAAACTAAATCTCTGCCTTTCAACC
TCCTACCCGCCCCCCGGCGGGCTCATTGAATGGTGCTCATACCCACAGAA
GAAACTCACAGGACTCGGGAGGGAGCCCCATCGGGGACGAACGAGGACAC
CAAGGCAATGCTTACGATGACAGCAACAGTGCTTGGTAAGCTCAAAGAAC
CCTTTACTACGCAGCGCCCATCCGTCCGCATCCTGGAGTCGCCGTCGCTT
CCTTCTTCCATTCCCCTACATCTGCCTTTGCCGGAGCTCACTGATTCGGT
CAAAAGCACCGCAAGCAGCCGTTTGTCGATCAATCGAGGCGGCAGTACAG
CAAACTACACTCCTTTGCAGCGCTGCCACACCGATATACCTCTAACGGGT
GGCAACGCCATTGCTTCACCGCATTCTGACATAGCGGCTCTCAGTGACAT
TCATCGATTAGCTCTGCTAGAAGCCGCTACTGCCGGTCCTGTCCCGGCAG
AAACGAGCGGTGAAGGAGAAGGAGAACAGATGAATGAGAAGAGTTCCAAG
TCGTTCTCATCGTCGATCGTGGCACCTCTGACACCGAGCATTGACTCGAC
ACGGGAAGGTGGCTCACTGATGTCGCCGACATGGGTGAGAGAGGTGGTGA
ACGGTGAGGTGTATACACAAGGCACGGCAAACGCATCGTCCTCTTATACA
TGTAGCAGTCAGGCCTGCTCTCTCACAATGACTTCGCTGTCGCCCAGCGC
AGATCTGCAGAGTAAGGAGCATGAAGAGGGCGAGGGCGTTGAGGAGGAAA
AAGAGGGGAATAGCAGTAGCACATATATTTCAAAGTCTTATCACGCCACA
GCCTCGAACACTCTCCCGGTGATTGAAACTACAGCTACATGTCCTCCTTC
CATCCAGTCTGAAACAGCAGCAGTCGCACCAGAACCACCGTCTACTGGAT
CCGGGCAACGAATCAAGCGTTTGCTGCGTCTTAACTTTGACGAAGCTCAG
TCTCACACCCTACCCACCAGCGGCAATACCGGTCACAAGGCATCTCCAAC
CGCGTTCACCAACACCGGCAGCAATCGCACCGTTTATATGGACGATCGAA
GCGGGATGACGATCCTCCAAATGTCAGACGGAGACATTGTCCGTTTCGAG
GACGTGCAACGAAAAGACGGGCGCATTACGGCCCACATCCAGGTCGCTCA
TCGCTTTGCCATCGGCAGCAAGGCACCACCACAACAATCACGCCCATGGC
AACGACCCGCAGAATCTCTCTGCATCAGGGCACACGACATCCGTCAGCCA
CTCCCATATGAGGGACGGCAAGAACAACAACAGCCACCACCACCACAAGA
AACTAAATCTCTGCCTTTCAACCTCCTACCCGCCCCCCGGCGGGCTCATT
GAATGGTGCTCATACCCACAGAAGAAACTCACAGGACTCGGGAGGGAGCC
CCATCGGGGACGAACGAGGACACCAAGGCAATGCTTACGATGACAGCAAC
AGTGCTTGGTAAGCTCAAAGAACCCTTTACTACGCAGCGCCCATCCGTCC
GCATCCTGGAGTCGCCGTCGCTTCCTTCTTCCATTCCCCTACATCTGCCT
TTGCCGGAGCTCACTGATTCGGTCAAAAGCACCGCAAGCAGCCGTTTGTC
GATCAATCGAGGCGGCAGTACAGCAAACTACACTCCTTTGCAGCGCTGCC
ACACCGATATACCTCTAACGGGTGGCAACGCCATTGCTTCACCGCATTCT
GACATAGCGGCTCTCAGTGACATTCATCGATTAGCTCTGCTAGAAGCCGC
TACTGCCGGTCCTGTCCCGGCAGAAACGAGCGGTGAAGGAGAAGGAGAAC
AGATGAATGAGAAGAGTTCCAAGTCGTTCTCATCGTCGATCGTGGCACCT
CTGACACCGAGCATTGACTCGACACGGGAAGGTGGCTCACTGATGTCGCC
GACATGGGTGAGAGAGGTGGTGAACGGTGAGGTGTATACACAAGGCACGG
CAAACGCATCGTCCTCTTATACATGTAGCAGTCAGGCCTGCTCTCTCACA
ATGACTTCGCTGTCGCCCAGCGCAGATCTGCAGAGTAAGGAGCATGAAGA
GGGCGAGGGCGTTGAGGAGGAAAAAGAGGGGAATAGCAGTAGCACATATA
TTTCAAAGTCTTATCACGCCACAGCCTCGAACACTCTCCCGGTGATTGAA
ACTACAGCTACATGTCCTCCTTCCATCCAGTCTGAAACAGCAGCAGTCGC
ACCAGAACCACCGTCTACTGGATCCGGGCAACGAATCAAGCGTTTGCTGC
GTCTTAACTTTGACGAAGCTCAGTCTCACACCCTACCCACCAGCGGCAAT
ACCGGTCACAAGGCATCTCCAACCGCGTTCACCAACACCGGCAGCAATCG
CACCGTTTATATGGACGATCGAAGCGGGATGACGATCCTCCAAATGTCAG
ACGGAGACATTGTCCGTTTCGAGGACGTGCAACGAAAAGACGGGCGCATT
ACGGCCCACATCCAGGTCGCTCATCGCTTTGCCATCGGCAGCAAGG
back to top
Synonyms
Publications