jgi.p|Nanoce1779_2|529431, mRNA_5506 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|529431
Unique NamemRNA_5506
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1221
Alignment locationscaffold_13:583093..584442 -

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Properties
Property NameValue
TranscriptId529517
TrackFilteredModels2
ProteinId529431
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:583093..584442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529431gene_5506Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529431mRNA_5506-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5506CDS_5506Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5506 ID=mRNA_5506|Name=jgi.p|Nanoce1779_2|529431|organism=Nannochloropsis oceanica|type=mRNA|length=1221bp
ATGGGCGACAACCTGCTCGAGCTCGGTTTTCTGGGGCGTGGTGCTGGCTC
CATTGAGGTGGTTAAAGCTCTACATTTCCCTTCAATGCGAATGGTGGCCG
TCAAAAAGGTCCCGATTGACAATCAAGCGAAGTTAAGTCAAGCTATACAC
GAGCTTGAACAGTTAATGGGCAACCAAGTCACAATCAGGGAGCGAATTGC
CGATGATTCCACCAGGGTCGATCCCAATCGGTCTTCGCGCATGCAGGACG
AGAGGGAGGGAGGGAGGGAGTATTGTCCGTTTATTGTGAGTCTGTACGAT
GCCTACAAGCAACAGTCCCAGCTCTGCCTGGTGATGGAGTATATGAATGG
CGGCTCTCTCCAAGATTTGGTTGAAAAGGGCGGGTCGACGGATGAGGAGC
TCTTGGCCAAGATTGCGTACAATGTGTTGAGAGGGTTACATTACCTGCAC
AGTCAGGGGAAGATCCACCGAGACGTGAAGCCGGGAAACTTATTGATCAA
TACGAAGAATTTCGTAAAGCTCGCGGATTTTGGCTTGGCGGCCAGTTTGG
ATAAAGTTAAGTCGCCCACGGTGGGCACGAACAGATATATCCCGCCCGAG
CTGCTGGATTCCGGCCGATGGAGCACCAAAGGCGATATATGGAGCTTCGG
TCTCTCTCTTTGGGCCATCACGGAGGGCCAACGACCATTTTCACATGTCC
CGGACGACGAGATTTTGATTGCTGCAACTGTCATTGACGACCCTGCCCCC
CGTGTCTCGGTGAATTTCTCTGCTGAATTTCGCGATTTTGTTGACCAATG
TCTGTTGAAAAACCCGTCGGAAAGGGCCTCAGCCAAAGCGTTACTACAAC
ACCCTTTCATTAGATCGAAGGCGTACGTTCATTTGAATGAGAGGGAGTTG
AGTCATGTGGCGCGTAAGGTCACACAGTATTTCCAAACGCACCCGGACAA
GGCCTTGCTGACACCTGCCATGGTCCGTGCGCTGGCCCAAGAGGTCCACT
TGGACGAAAGGTATGTAGGCGAGCATTTGAGAGAGGCGTTTGAAGGACTG
TTTTATGTGGATGCGACTATGGGACCACCACCTTTGACACCACCACGGAG
GAGGAGGAGTGGAAATGAGCTGGCGGTGATGGAGGGCAGGAAGGGGACAA
GGGTCGTGGGGGAAAAAGTAGGTGAGAAGAAGGGGGGAAATGAGATAGTG
AGGTGTTGTGTACTTATGTAG
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protein sequence of jgi.p|Nanoce1779_2|529431

>mRNA_5506-protein ID=mRNA_5506-protein|Name=jgi.p|Nanoce1779_2|529431|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MGDNLLELGFLGRGAGSIEVVKALHFPSMRMVAVKKVPIDNQAKLSQAIH
ELEQLMGNQVTIRERIADDSTRVDPNRSSRMQDEREGGREYCPFIVSLYD
AYKQQSQLCLVMEYMNGGSLQDLVEKGGSTDEELLAKIAYNVLRGLHYLH
SQGKIHRDVKPGNLLINTKNFVKLADFGLAASLDKVKSPTVGTNRYIPPE
LLDSGRWSTKGDIWSFGLSLWAITEGQRPFSHVPDDEILIAATVIDDPAP
RVSVNFSAEFRDFVDQCLLKNPSERASAKALLQHPFIRSKAYVHLNEREL
SHVARKVTQYFQTHPDKALLTPAMVRALAQEVHLDERYVGEHLREAFEGL
FYVDATMGPPPLTPPRRRRSGNELAVMEGRKGTRVVGEKVGEKKGGNEIV
RCCVLM*
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mRNA from alignment at scaffold_13:583093..584442-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5506 ID=mRNA_5506|Name=jgi.p|Nanoce1779_2|529431|organism=Nannochloropsis oceanica|type=mRNA|length=1350bp|location=Sequence derived from alignment at scaffold_13:583093..584442- (Nannochloropsis oceanica)
ATGGGCGACAACCTGCTCGAGCTCGGTTTTCTGGGGCGTGGTGCTGGCTC
CATTGAGGTGGTTAAAGCTCTACATTTCCCTTCAATGCGAATGGTGGCCG
TCAAAAAGGTCCCGATTGACAATCAAGCGAAGTTAAGTCAAGCTATACAC
GAGCTTGAACAGTTAATGGGCAACCAAGTCACAATCAGGGAGCGAATTGC
CGATGATTCCACCAGGGTCGATCCCAATCGGTCTTCGCGCATGCAGGACG
AGAGGGAGGGAGGGAGGGAGTATTGTCCGTTTATTGTGAGTCTGTACGAT
GCCTACAAGCAACAGTCCCAGCTCTGCCTGGTGATGGAGTATATGAATGG
CGGCTCTCTCCAAGATTTGGTTGAAAAGGGCGGGTCGACGGATGAGGAGC
TCTTGGCCAAGATTGCGTACAATGTGTTGAGAGGGTTACATTACCTGCAC
AGTCAGGGGAAGATCCACCGAGACGTGAAGCCGGGAAACTTATTGATCAA
TACGAAGAATTTCGTAAAGCTCGCGGATTTTGGCTTGGCGGCCAGTTTGG
ATAAAGTTAAGTCGCCCACGGTGGGCACGAACAGATATATCCCGCCCGAG
CTGCTGGATTCGTTGATCGAGGATGAGGAAGAGGAGGAATTAGCAAGGAC
GGAGAGAGGGATGGAAGGGGCAGGTTCTGCTGCTGAAGTCGCGACAACTC
CAGCGGCCAGTGCTGGCACTCCCAACCCCTTGGCGAGCAGCGGCCGATGG
AGCACCAAAGGCGATATATGGAGCTTCGGTCTCTCTCTTTGGGCCATCAC
GGAGGGCCAACGACCATTTTCACATGTCCCGGACGACGAGATTTTGATTG
CTGCAACTGTCATTGACGACCCTGCCCCCCGTGTCTCGGTGAATTTCTCT
GCTGAATTTCGCGATTTTGTTGACCAATGTCTGTTGAAAAACCCGTCGGA
AAGGGCCTCAGCCAAAGCGTTACTACAACACCCTTTCATTAGATCGAAGG
CGTACGTTCATTTGAATGAGAGGGAGTTGAGTCATGTGGCGCGTAAGGTC
ACACAGTATTTCCAAACGCACCCGGACAAGGCCTTGCTGACACCTGCCAT
GGTCCGTGCGCTGGCCCAAGAGGTCCACTTGGACGAAAGGTATGTAGGCG
AGCATTTGAGAGAGGCGTTTGAAGGACTGTTTTATGTGGATGCGACTATG
GGACCACCACCTTTGACACCACCACGGAGGAGGAGGAGTGGAAATGAGCT
GGCGGTGATGGAGGGCAGGAAGGGGACAAGGGTCGTGGGGGAAAAAGTAG
GTGAGAAGAAGGGGGGAAATGAGATAGTGAGGTGTTGTGTACTTATGTAG
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Coding sequence (CDS) from alignment at scaffold_13:583093..584442-

>mRNA_5506 ID=mRNA_5506|Name=jgi.p|Nanoce1779_2|529431|organism=Nannochloropsis oceanica|type=CDS|length=2442bp|location=Sequence derived from alignment at scaffold_13:583093..584442- (Nannochloropsis oceanica)
CGGCCGATGGAGCACCAAAGGCGATATATGGAGCTTCGGTCTCTCTCTTT
GGGCCATCACGGAGGGCCAACGACCATTTTCACATGTCCCGGACGACGAG
ATTTTGATTGCTGCAACTGTCATTGACGACCCTGCCCCCCGTGTCTCGGT
GAATTTCTCTGCTGAATTTCGCGATTTTGTTGACCAATGTCTGTTGAAAA
ACCCGTCGGAAAGGGCCTCAGCCAAAGCGTTACTACAACACCCTTTCATT
AGATCGAAGGCGTACGTTCATTTGAATGAGAGGGAGTTGAGTCATGTGGC
GCGTAAGGTCACACAGTATTTCCAAACGCACCCGGACAAGGCCTTGCTGA
CACCTGCCATGGTCCGTGCGCTGGCCCAAGAGGTCCACTTGGACGAAAGG
TATGTAGGCGAGCATTTGAGAGAGGCGTTTGAAGGACTGTTTTATGTGGA
TGCGACTATGGGACCACCACCTTTGACACCACCACGGAGGAGGAGGAGTG
GAAATGAGCTGGCGGTGATGGAGGGCAGGAAGGGGACAAGGGTCGTGGGG
GAAAAAGTAGGTGAGAAGAAGGGGGGAAATGAGATAGTGAGGTGTTGTGT
ACTTATGTAGATGGGCGACAACCTGCTCGAGCTCGGTTTTCTGGGGCGTG
GTGCTGGCTCCATTGAGGTGGTTAAAGCTCTACATTTCCCTTCAATGCGA
ATGGTGGCCGTCAAAAAGGTCCCGATTGACAATCAAGCGAAGTTAAGTCA
AGCTATACACGAGCTTGAACAGTTAATGGGCAACCAAGTCACAATCAGGG
AGCGAATTGCCGATGATTCCACCAGGGTCGATCCCAATCGGTCTTCGCGC
ATGCAGGACGAGAGGGAGGGAGGGAGGGAGTATTGTCCGTTTATTGTGAG
TCTGTACGATGCCTACAAGCAACAGTCCCAGCTCTGCCTGGTGATGGAGT
ATATGAATGGCGGCTCTCTCCAAGATTTGGTTGAAAAGGGCGGGTCGACG
GATGAGGAGCTCTTGGCCAAGATTGCGTACAATGTGTTGAGAGGGTTACA
TTACCTGCACAGTCAGGGGAAGATCCACCGAGACGTGAAGCCGGGAAACT
TATTGATCAATACGAAGAATTTCGTAAAGCTCGCGGATTTTGGCTTGGCG
GCCAGTTTGGATAAAGTTAAGTCGCCCACGGTGGGCACGAACAGATATAT
CCCGCCCGAGCTGCTGGATTCCGGCCGATGGAGCACCAAAGGCGATATAT
GGAGCTTCGGTCTCTCTCTTTGGGCCATCACGGAGGGCCAACGACCATTT
TCACATGTCCCGGACGACGAGATTTTGATTGCTGCAACTGTCATTGACGA
CCCTGCCCCCCGTGTCTCGGTGAATTTCTCTGCTGAATTTCGCGATTTTG
TTGACCAATGTCTGTTGAAAAACCCGTCGGAAAGGGCCTCAGCCAAAGCG
TTACTACAACACCCTTTCATTAGATCGAAGGCGTACGTTCATTTGAATGA
GAGGGAGTTGAGTCATGTGGCGCGTAAGGTCACACAGTATTTCCAAACGC
ACCCGGACAAGGCCTTGCTGACACCTGCCATGGTCCGTGCGCTGGCCCAA
GAGGTCCACTTGGACGAAAGGTATGTAGGCGAGCATTTGAGAGAGGCGTT
TGAAGGACTGTTTTATGTGGATGCGACTATGGGACCACCACCTTTGACAC
CACCACGGAGGAGGAGGAGTGGAAATGAGCTGGCGGTGATGGAGGGCAGG
AAGGGGACAAGGGTCGTGGGGGAAAAAGTAGGTGAGAAGAAGGGGGGAAA
TGAGATAGTGAGGTGTTGTGTACTTATGTAGATGGGCGACAACCTGCTCG
AGCTCGGTTTTCTGGGGCGTGGTGCTGGCTCCATTGAGGTGGTTAAAGCT
CTACATTTCCCTTCAATGCGAATGGTGGCCGTCAAAAAGGTCCCGATTGA
CAATCAAGCGAAGTTAAGTCAAGCTATACACGAGCTTGAACAGTTAATGG
GCAACCAAGTCACAATCAGGGAGCGAATTGCCGATGATTCCACCAGGGTC
GATCCCAATCGGTCTTCGCGCATGCAGGACGAGAGGGAGGGAGGGAGGGA
GTATTGTCCGTTTATTGTGAGTCTGTACGATGCCTACAAGCAACAGTCCC
AGCTCTGCCTGGTGATGGAGTATATGAATGGCGGCTCTCTCCAAGATTTG
GTTGAAAAGGGCGGGTCGACGGATGAGGAGCTCTTGGCCAAGATTGCGTA
CAATGTGTTGAGAGGGTTACATTACCTGCACAGTCAGGGGAAGATCCACC
GAGACGTGAAGCCGGGAAACTTATTGATCAATACGAAGAATTTCGTAAAG
CTCGCGGATTTTGGCTTGGCGGCCAGTTTGGATAAAGTTAAGTCGCCCAC
GGTGGGCACGAACAGATATATCCCGCCCGAGCTGCTGGATTC
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Synonyms
Publications