jgi.p|Nanoce1779_2|68780, mRNA_5504 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|68780
Unique Name	mRNA_5504
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2318
Alignment location	scaffold_13:579881..582267 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	68866
Track	FilteredModels2
ProteinId	68780

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:579881..582267 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|68780	gene_5504	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|68780	mRNA_5504-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5504	CDS_5504	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:579881..582267+
coding sequence from alignment at scaffold_13:579881..582267+

mRNA sequence

>mRNA_5504 ID=mRNA_5504|Name=jgi.p|Nanoce1779_2|68780|organism=Nannochloropsis oceanica|type=mRNA|length=2318bp
GAGTGTGGAGAAGAGGGAAGGTGGAGCAAGTTGCTGTGATGCGATGGATA
AGGAGGACAGAAAAAGAAGCATGAAGAGGGAGGGTGTCGAGTCAAAGTCA
ACCTGACGTACCAAAGAAGCACCCTTCGAAGTTCGGGAATGCTTTCAATG
ATGCATGCCGAAGCAGGCCGACACTATACCGTGCAGAGCACCACATTTCC
ATGTACAGGGCGCCCAGGCATCATTCTATTGATTCATCCTGGGGTTTGTG
CGACTCTGACCACACCGGACAACTTTTGACAGGCCTTTTTCGCAGAAAGG
TTGTTACAACGGTTGACGAATTGAAGCCGAGGATGATGTTATTTTCTGTC
TCACGGAAACACCAATGGCCACGTCCCGAGGTTTCTCCTCCATGTCAGGG
TCTCCTCCTATCCATTCTGTGGTTCTCCGACCGTCGGCGTGACAAATTAA
TTGACGACACACTGGTGTGTGGTCGACGCACAAGATTTCTGCCTGCCTCC
TGCCTCTCCCCAACACGAACACCCCTTGCTCGTGTCTCCCGGGCTCTATT
CACACGCGTCAATCCCTTACCACACACATGTCTTACAGCAGGAAATTGCA
CCATAATTTCTGTGTATCATTCTCCTTCCCCTAGCGCCTAATTGTCTGCC
TTGGCCTGCTTCGCCTTTCCCCCCAGTCTCCCCGTCCGACCCCCTCCCCA
ACCAATCCTACGATGGTTCTTCAGCGTTACTTCCGGAGTTCCAAACGCTC
CGCCTCCTACGCCCTAGGCCTGTTCTTTATCTTCCTTGTCGCTGTCATTT
GGGCTGGGGCTTCCGTGCTCATTCAACACATATACACCGACATGCATTTC
GAGTCGCCTTTCCTCCTAACGTTCATCTGCACCAGTCTCTTTAGCATCTA
CCTGCCTTGGACATTGCTATGCGCCAAGCTGGGGTGGGGTGAAAACCCAC
CGTGGCGCGATCCTGTCCCTGGAGAGGGCGTAGGAGGAGCGCTGTATACA
ACGGTGCGAAGAGGAGGAGGAGGAGGAGGAGGAGGGGGTAACACCGGCAG
CAGCTGCATCAATTATGGCAACAGCCGCATGAGAATAGATGAACTGCCCT
TGCGGGCAGGGATGGGCAGCGATTCATCTCTATTTTCAGTAGAGACCACA
GCAGCAGCAGTGCAGGAGCACGACGAGCTCACGGCCACGTCCTTCCCCTC
CTCCTCCTGCTCCCCCCCCCCACCCCAACAACGATGGAGCCACCTAAAAA
CACTTCGCACTGCTATGATCGTCTTCCCTCTCTTCTTCATCGCCAACTTC
TCCTACAACGTCTCCCTTGCCCACACCAGCGTCACGAGTAACACCATCAT
CAGCACCACCTCTTCCCTGTGGACGTTCCTCTTCTCTACCTGCCGAGGGC
TGGAGGCCTTCGCATGGACCAAGATGGGAGGCTTGTTGTTGTCCATGGGA
GGGACGGTGCTGGTGGGTGTAGCGGACCGAAGCGAAGGAGGGGATGATAC
CCTGGGAGGGGACGTGATATGTCTTTTTGCTGCTGTCATGTACGGTGTGT
ACACCACAGCCCTACGTGTGCTAGTGCCGGACGACTCCTCCGTATCCTTT
CAACTTCTCTTTGGGTACATCGGCCTCCTCTGCCTCCTCCTCCTCCTCCC
CCCCACCCTCCTCCTCCTCGCCACACACACCTTCCCTTCCATCTTCGATG
GAATGACCGTGTCTGTACTAGGCTTTATTGTTCTCAATGGACTTGCTGAT
AATGTGTTGTCGGATTATTTGTGGGCCCGATCCATCGTATTAACCTCCCC
AACTGTTGCTACTGTCGGCCTCTCCCTCACCATTCCCCTTGCGTTTTTTT
CGGACGCAGCGATGGGCAAATTGCGGGGAGGATGGGAGGAGATCGTAGGT
GCACTGGCAGTAGCAGCAGGGTTTGGTTTGGTAAGTTGGAAGGAGAAGGG
GCAGGTAGAGCAGCAGGATGACCAGGAGGAGGGGAGGAAGGCGCTGGGCG
GCTTGAGGGAGTGGGAAAGGGGGATAAACGAGGAGGAGGAGGAGGAAGAA
GAAGAGGAAGAAATAAAGGTGGGGCTGTGAAGAGAACGCAAAAGAGAAAA
CATACAGGAACAGCGACTGTAAAGTAGCATTGAAGAAAGTATATGTCGAT
AAAAGTGGTAGAGGAACGATGTAAGTTGTGCTCTTCTTGCTCGGGTGCTC
GGGAGGATGCAGCACCAGCACTGGCTCGATACGATTTGAGTTGATATTTA
AGCAACGGGGGGACACTTTCACTCCTCGTCGGAGTTGCACCTGCCTCGTC
TTTGCTGGCAGGTGCAAC

protein sequence of jgi.p|Nanoce1779_2|68780

>mRNA_5504-protein ID=mRNA_5504-protein|Name=jgi.p|Nanoce1779_2|68780|organism=Nannochloropsis oceanica|type=polypeptide|length=456bp
MVLQRYFRSSKRSASYALGLFFIFLVAVIWAGASVLIQHIYTDMHFESPF
LLTFICTSLFSIYLPWTLLCAKLGWGENPPWRDPVPGEGVGGALYTTVRR
GGGGGGGGGNTGSSCINYGNSRMRIDELPLRAGMGSDSSLFSVETTAAAV
QEHDELTATSFPSSSCSPPPPQQRWSHLKTLRTAMIVFPLFFIANFSYNV
SLAHTSVTSNTIISTTSSLWTFLFSTCRGLEAFAWTKMGGLLLSMGGTVL
VGVADRSEGGDDTLGGDVICLFAAVMYGVYTTALRVLVPDDSSVSFQLLF
GYIGLLCLLLLLPPTLLLLATHTFPSIFDGMTVSVLGFIVLNGLADNVLS
DYLWARSIVLTSPTVATVGLSLTIPLAFFSDAAMGKLRGGWEEIVGALAV
AAGFGLVSWKEKGQVEQQDDQEEGRKALGGLREWERGINEEEEEEEEEEE
IKVGL*

mRNA from alignment at scaffold_13:579881..582267+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5504 ID=mRNA_5504|Name=jgi.p|Nanoce1779_2|68780|organism=Nannochloropsis oceanica|type=mRNA|length=2387bp|location=Sequence derived from alignment at scaffold_13:579881..582267+ (Nannochloropsis oceanica)
GAGTGTGGAGAAGAGGGAAGGTGGAGCAAGTTGCTGTGATGCGATGGATA
AGGAGGACAGAAAAAGAAGCATGAAGAGGGAGGGTGTCGAGTCAAAGTCA
ACCTGACGTACCAAAGAAGCACCCTTCGAAGTTCGGGAATGCTTTCAATG
ATGCATGCCGAAGCAGGCCGACACTATACCGTGCAGAGCACCACATTTCC
ATGTACAGGGCGCCCAGGCATCATTCTATTGATTCATCCTGGGGTTTGTG
CGACTCTGACCACACCGGACAACTTTTGACAGGCCTTTTTCGCAGAAAGG
TTGTTACAACGGTTGACGAATTGAAGCCGAGGATGATGTTATTTTCTGTC
TCACGGAAACACCAATGGCCACGTCCCGAGGTTTCTCCTCCATGTCAGGG
TCTCCTCCTATCCATTCTGTGGTTCTCCGACCGTCGGCGTGACAAATTAA
TTGACGACACACTGGTGTGTGGTCGACGCACAAGATTTCTGCCTGCCTCC
TGCCTCTCCCCAACACGAACACCCCTTGCTCGTGTCTCCCGGGCTCTATT
CACACGCGTCAATCCCTTACCACACACATGTCTTACAGCAGGAAATTGCA
CCATAATTTCTGTGTATCATTCTCCTTCCCCTAGCGCCTAATTGTCTGCC
TTGGCCTGCTTCGCCTTTCCCCCCAGTCTCCCCGTCCGACCCCCTCCCCA
ACCAATCCTACGATGGTTCTTCAGCGTTACTTCCGGAGTTCCAAACGCTC
CGCCTCCTACGCCCTAGGCCTGTTCTTTATCTTCCTTGTCGCTGTCATTT
GGGCTGGGGCTTCCGTGCTCATTCAACACATATACACCGACATGCATTTC
GAGTCGCCTTTCCTCCTAACGTTCATCTGCACCAGTCTCTTTAGCATCTA
CCTGCCTTGGACATTGCTATGCGCCAAGCTGGGGTGGGGTGAAAACCCAC
CGTGGCGCGATCCTGTCCCTGGAGAGGGCGTAGGAGGAGCGCTGTATACA
ACGGTGCGAAGTGGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGGGGTAACACCGGCAGCAGCTGCATCAATTATGGCAACAGCCGCATG
AGAATAGATGAACTGCCCTTGCGGGCAGGGATGGGCAGCGATTCATCTCT
ATTTTCAGTAGAGACCACAGCAGCAGCAGTGCAGGAGCACGACGAGCTCA
CGGCCACGTCCTTCCCCTCCTCCTCCTGCTCCCCCCCCCCACCCCAACAA
CGATGGAGCCACCTAAAAACACTTCGCACTGCTATGATCGTCTTCCCTCT
CTTCTTCATCGCCAACTTCTCCTACAACGTCTCCCTTGCCCACACCAGCG
TCACGAGTAACACCATCATCAGCACCACCTCTTCCCTGTGGACGTTCCTC
TTCTCTACCTGCCGAGGGCTGGAGGCCTTCGCATGGACCAAGATGGGAGG
CTTGTTGTTGTCCATGGGAGGGACGGTGCTGGTGGGTGTAGCGGACCGAA
GCGAAGGAGGGGATGATACCCTGGGAGGGGACGTGATATGTCTTTTTGCT
GCTGTCATGTACGGTGTGTACACCACAGCCCTACGTGTGCTAGTGCCGGA
CGACTCCTCCGTATCCTTTCAACTTCTCTTTGGGTACATCGGCCTCCTCT
GCCTCCTCCTCCTCCTCCCCCCCACCCTCCTCCTCCTCGCCACACACACC
TTCCCTTCCATCTTCGATGGAATGACCGTGTCTGTACTAGGCTTTATTGT
TCTCAATGGACTTGCTGATAATGTGTTGTCGGATTATTTGTGGGCCCGAT
CCATCGTATTAACCTCCCCAACTGTTGCTACTGTCGGCCTCTCCCTCACC
ATTCCCCTTGCGTTTTTTTCGGACGCAGCGATGGGCAAATTGCGGGGAGG
ATGGGAGGAGATCGTAGGTGCACTGGCAGTAGCAGCAGGGTTTGGTTTGG
TAAGTTGGAAGGAGAAGGGGCAGGTAGAGCAGCAGGATGACCAGGAGGAG
GGGAGGAAGGCGCTGGGCGGCTTGAGGGAGTGGGAAAGGGGGATAAACGA
GGAGGAGGAGGAGGAAGAAGAAGAGGAAGAAATAAAGGTGGGGCTGTGAA
GAGAACGCAAAAGAGAAAACATACAGGAACAGCGACTGTAAAGTAGCATT
GAAGAAAGTATATGTCGATAAAAGTGGTAGAGGAACGATGTAAGTTGTGC
TCTTCTTGCTCGGGTGCTCGGGAGGATGCAGCACCAGCACTGGCTCGATA
CGATTTGAGTTGATATTTAAGCAACGGGGGGACACTTTCACTCCTCGTCG
GAGTTGCACCTGCCTCGTCTTTGCTGGCAGGTGCAAC

Coding sequence (CDS) from alignment at scaffold_13:579881..582267+

>mRNA_5504 ID=mRNA_5504|Name=jgi.p|Nanoce1779_2|68780|organism=Nannochloropsis oceanica|type=CDS|length=2736bp|location=Sequence derived from alignment at scaffold_13:579881..582267+ (Nannochloropsis oceanica)
ATGGTTCTTCAGCGTTACTTCCGGAGTTCCAAACGCTCCGCCTCCTACGC
CCTAGGCCTGTTCTTTATCTTCCTTGTCGCTGTCATTTGGGCTGGGGCTT
CCGTGCTCATTCAACACATATACACCGACATGCATTTCGAGTCGCCTTTC
CTCCTAACGTTCATCTGCACCAGTCTCTTTAGCATCTACCTGCCTTGGAC
ATTGCTATGCGCCAAGCTGGGGTGGGGTGAAAACCCACCGTGGCGCGATC
CTGTCCCTGGAGAGGGCGTAGGAGGAGCGCTGTATACAACGGTGCGAAGA
GGAGGAGGAGGAGGAGGAGGAGGGGGTAACACCGGCAGCAGCTGCATCAA
TTATGGCAACAGCCGCATGAGAATAGATGAACTGCCCTTGCGGGCAGGGA
TGGGCAGCGATTCATCTCTATTTTCAGTAGAGACCACAGCAGCAGCAGTG
CAGGAGCACGACGAGCTCACGGCCACGTCCTTCCCCTCCTCCTCCTGCTC
CCCCCCCCCACCCCAACAACGATGGAGCCACCTAAAAACACTTCGCACTG
CTATGATCGTCTTCCCTCTCTTCTTCATCGCCAACTTCTCCTACAACGTC
TCCCTTGCCCACACCAGCGTCACGAGTAACACCATCATCAGCACCACCTC
TTCCCTGTGGACGTTCCTCTTCTCTACCTGCCGAGGGCTGGAGGCCTTCG
CATGGACCAAGATGGGAGGCTTGTTGTTGTCCATGGGAGGGACGGTGCTG
GTGGGTGTAGCGGACCGAAGCGAAGGAGGGGATGATACCCTGGGAGGGGA
CGTGATATGTCTTTTTGCTGCTGTCATGTACGGTGTGTACACCACAGCCC
TACGTGTGCTAGTGCCGGACGACTCCTCCGTATCCTTTCAACTTCTCTTT
GGGTACATCGGCCTCCTCTGCCTCCTCCTCCTCCTCCCCCCCACCCTCCT
CCTCCTCGCCACACACACCTTCCCTTCCATCTTCGATGGAATGACCGTGT
CTGTACTAGGCTTTATTGTTCTCAATGGACTTGCTGATAATGTGTTGTCG
GATTATTTGTGGGCCCGATCCATCGTATTAACCTCCCCAACTGTTGCTAC
TGTCGGCCTCTCCCTCACCATTCCCCTTGCGTTTTTTTCGGACGCAGCGA
TGGGCAAATTGCGGGGAGGATGGGAGGAGATCGTAGGTGCACTGGCAGTA
GCAGCAGGGTTTGGTTTGGTAAGTTGGAAGGAGAAGGGGCAGGTAGAGCA
GCAGGATGACCAGGAGGAGGGGAGGAAGGCGCTGGGCGGCTTGAGGGAGT
GGGAAAGGGGGATAAACGAGGAGGAGGAGGAGGAAGAAGAAGAGGAAGAA
ATAAAGGTGGGGCTGTGAATGGTTCTTCAGCGTTACTTCCGGAGTTCCAA
ACGCTCCGCCTCCTACGCCCTAGGCCTGTTCTTTATCTTCCTTGTCGCTG
TCATTTGGGCTGGGGCTTCCGTGCTCATTCAACACATATACACCGACATG
CATTTCGAGTCGCCTTTCCTCCTAACGTTCATCTGCACCAGTCTCTTTAG
CATCTACCTGCCTTGGACATTGCTATGCGCCAAGCTGGGGTGGGGTGAAA
ACCCACCGTGGCGCGATCCTGTCCCTGGAGAGGGCGTAGGAGGAGCGCTG
TATACAACGGTGCGAAGAGGAGGAGGAGGAGGAGGAGGAGGGGGTAACAC
CGGCAGCAGCTGCATCAATTATGGCAACAGCCGCATGAGAATAGATGAAC
TGCCCTTGCGGGCAGGGATGGGCAGCGATTCATCTCTATTTTCAGTAGAG
ACCACAGCAGCAGCAGTGCAGGAGCACGACGAGCTCACGGCCACGTCCTT
CCCCTCCTCCTCCTGCTCCCCCCCCCCACCCCAACAACGATGGAGCCACC
TAAAAACACTTCGCACTGCTATGATCGTCTTCCCTCTCTTCTTCATCGCC
AACTTCTCCTACAACGTCTCCCTTGCCCACACCAGCGTCACGAGTAACAC
CATCATCAGCACCACCTCTTCCCTGTGGACGTTCCTCTTCTCTACCTGCC
GAGGGCTGGAGGCCTTCGCATGGACCAAGATGGGAGGCTTGTTGTTGTCC
ATGGGAGGGACGGTGCTGGTGGGTGTAGCGGACCGAAGCGAAGGAGGGGA
TGATACCCTGGGAGGGGACGTGATATGTCTTTTTGCTGCTGTCATGTACG
GTGTGTACACCACAGCCCTACGTGTGCTAGTGCCGGACGACTCCTCCGTA
TCCTTTCAACTTCTCTTTGGGTACATCGGCCTCCTCTGCCTCCTCCTCCT
CCTCCCCCCCACCCTCCTCCTCCTCGCCACACACACCTTCCCTTCCATCT
TCGATGGAATGACCGTGTCTGTACTAGGCTTTATTGTTCTCAATGGACTT
GCTGATAATGTGTTGTCGGATTATTTGTGGGCCCGATCCATCGTATTAAC
CTCCCCAACTGTTGCTACTGTCGGCCTCTCCCTCACCATTCCCCTTGCGT
TTTTTTCGGACGCAGCGATGGGCAAATTGCGGGGAGGATGGGAGGAGATC
GTAGGTGCACTGGCAGTAGCAGCAGGGTTTGGTTTGGTAAGTTGGAAGGA
GAAGGGGCAGGTAGAGCAGCAGGATGACCAGGAGGAGGGGAGGAAGGCGC
TGGGCGGCTTGAGGGAGTGGGAAAGGGGGATAAACGAGGAGGAGGAGGAG
GAAGAAGAAGAGGAAGAAATAAAGGTGGGGCTGTGA

Synonyms

Publications