jgi.p|Nanoce1779_2|592757, mRNA_5503 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592757
Unique Name	mRNA_5503
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2233
Alignment location	scaffold_13:577863..580239 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592843
Track	FilteredModels2
ProteinId	592757

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:577863..580239 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592757	gene_5503	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592757	mRNA_5503-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5503	CDS_5503	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:577863..580239-
coding sequence from alignment at scaffold_13:577863..580239-

mRNA sequence

>mRNA_5503 ID=mRNA_5503|Name=jgi.p|Nanoce1779_2|592757|organism=Nannochloropsis oceanica|type=mRNA|length=2233bp
TTTCCGTGAGACAGAAAATAACATCATCCTCGGCTTCAATTCGTCAACCG
TTGTAACAACCTTTCTGCGAAAAAGGCCTGTCAAAAGTTGTCCGGTGTGG
TCAGAGTCGCACAAACCCCAGGATGAATCAATAGAATGATGCCTGGGCGC
CCTGTACATGGAAATGTGGTGCTCTGCACGGTATAGTGTCGGCCTGCTTC
GGCATGCATCATTGAAAGCATTCCCGAACTTCGAAGGGTGCTTCTTTGGG
TTAAGCCACAGCCTAAATGTCCATTGCGGCCGCCGTTACTCCTCACTGTC
GCCGTCCTTTTCTTTTCACCGCCACCCGCGCCATCACTCGCATCACCAAT
TCTCGCACCATGTCGTCCTCCACCACCACCTCGCAAATGGAACGCTACGC
TTTCCTCGCCGAGTTAGGCATCTCTCAAACGATTCCTCAAAAGGGCGTCT
GTGATGGCCACACGTGGTACGGCTCCGGGCCGCAGCACCAGCAGATTAAT
CCCGCCACTGGCGAAGTAATAGGGACTGTGCAGTTTGGCACCAGCAAAGA
TTACCATAAAGCCGTCTCAGCCATGCTAGCCATAAAGGACAAGTGGGCTC
TAACTCCCGCCCCCATCCGCGGCGAGGTGGTGCGTCAGATCGGGCAGCGT
CTTCGGGAGAAGCAGCAAGCCTTGGGTGCCTTAGTCAGTGCGGAAATGGG
TAAAATCCTCGCGGAAGGCGTAGGTGAAGTGCAGGAGGCCATCGACATTT
GTGATTTTGCCGTAGGGTTGAGTCGATCTTTGAATGGGTCTGTCATTCCT
TCGGAGAGACCTGGACACTTCATGATGGAGCGCTACAACCCTCTGCATGG
GTGCGTGGGCATCGTTTCTGCTTTCAATTTTCCTTGTGCCGTATACTTTT
GGAACGTCGCCATCAGCCTTATTTGTGGCAATGTCAACCTGTGGAAGCCC
GCGGAGACGACATCATTGGTGGCTGTTGCCTTAGTGAAGGTAATCCAGGA
CGTGTTGAAGGAAGGAGGGCATGACCCCGCCATTGCGACCTTGGTGTGTG
GCACGGGCAAGGAGGTGGGGGAGGTACTGGTCCAAGACCAGAGAATTGAG
CTGGTAAGTTTCACGGGCAGCACCGCAGTAGGGAGGTATGTGAATCAGGT
AGTGGCGGGAAGGTTCGGCAAGGCACTTTTGGAACTAGGAGGAAACAATG
GGATGATTATTGACAAGGATGCGGATTTGGATTTAGCTGTTCGGGCAACG
CTCTTTGGGGCTGTAGGGACGGCGGGGCAACGCTGCACGAGCTTGCGGCG
ATTGTTTGTGCATGAGGCGGTGTATGAGGAGGTGGTGGGGAGGGTGGGAC
GTGCGTACGCCTCGGTGAAGATTGGGGATCCATTGGACCGAGGTACTTTA
TGTGGACCAGTGCACACAGCCGCGGCCGTGGAAAAGTTTTTGAGTACAGT
AGCCGAGGCCAAGAAAGAGGGGGGGAGGGTGTTGGTGGGGGGGAAGGTGT
GGGAGGGAAAGGGGTTGTTAAAAGGTGGGAATTTCGTGGAACCGACCGTG
ATTGAGATGCCGGCGTCGGCATCCGTGTTGGAGGAGGAGGCGTTCATCCC
CGTGATGTATGTGGTGAAGATAGCGAGTTTGGAAGAGGGCATTCGGATGA
ACAACGAAGTGAAGCAGGGCTTGTCCTCGGCCTTGTTCACTTCCTCGCCC
TCGAGCGTGTTCGAGTGGACGGGCCCGGGGGGGTCGGATTGTGGTATTGT
GAATGTGAACATAGGCACAAGTGGCGCGGAGATCGGGGGGGCGTTCGGGG
GGAACAAGGAGACGGGATGGGGGAGGGAGAGTGGGTCTGACGCCTGGAAG
CAGTACATGCGTCGGTCGACGTGCACGATTAATCACAGTAAGGAACTCCC
CTTGGCCCAGGGGATTGAGTTCGGGGGGAATGGAACAGGGGAGGGGAAGA
CCATGGACTGAGGGGGGTAGAGGGAGGTGAATGCGGTTTGGAAAAGAAAA
AGAAGAGAAAGAAGGGGAGGAAATAGGAGAAGAAACGGAAGGAGAAGAAA
GAAAAGATGAGGAAATAGAAGAAACAGATGATCAACCCGGATAAGCGTGG
ATAAAGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAAAGAG
GGGGGGCTTAAGAAAAGCAAGGAAAAGAGGAGA

protein sequence of jgi.p|Nanoce1779_2|592757

>mRNA_5503-protein ID=mRNA_5503-protein|Name=jgi.p|Nanoce1779_2|592757|organism=Nannochloropsis oceanica|type=polypeptide|length=565bp
MSIAAAVTPHCRRPFLFTATRAITRITNSRTMSSSTTTSQMERYAFLAEL
GISQTIPQKGVCDGHTWYGSGPQHQQINPATGEVIGTVQFGTSKDYHKAV
SAMLAIKDKWALTPAPIRGEVVRQIGQRLREKQQALGALVSAEMGKILAE
GVGEVQEAIDICDFAVGLSRSLNGSVIPSERPGHFMMERYNPLHGCVGIV
SAFNFPCAVYFWNVAISLICGNVNLWKPAETTSLVAVALVKVIQDVLKEG
GHDPAIATLVCGTGKEVGEVLVQDQRIELVSFTGSTAVGRYVNQVVAGRF
GKALLELGGNNGMIIDKDADLDLAVRATLFGAVGTAGQRCTSLRRLFVHE
AVYEEVVGRVGRAYASVKIGDPLDRGTLCGPVHTAAAVEKFLSTVAEAKK
EGGRVLVGGKVWEGKGLLKGGNFVEPTVIEMPASASVLEEEAFIPVMYVV
KIASLEEGIRMNNEVKQGLSSALFTSSPSSVFEWTGPGGSDCGIVNVNIG
TSGAEIGGAFGGNKETGWGRESGSDAWKQYMRRSTCTINHSKELPLAQGI
EFGGNGTGEGKTMD*

mRNA from alignment at scaffold_13:577863..580239-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5503 ID=mRNA_5503|Name=jgi.p|Nanoce1779_2|592757|organism=Nannochloropsis oceanica|type=mRNA|length=2377bp|location=Sequence derived from alignment at scaffold_13:577863..580239- (Nannochloropsis oceanica)
TTTCCGTGAGACAGAAAATAACATCATCCTCGGCTTCAATTCGTCAACCG
TTGTAACAACCTTTCTGCGAAAAAGGCCTGTCAAAAGTTGTCCGGTGTGG
TCAGAGTCGCACAAACCCCAGGATGAATCAATAGAATGATGCCTGGGCGC
CCTGTACATGGAAATGTGGTGCTCTGCACGGTATAGTGTCGGCCTGCTTC
GGCATGCATCATTGAAAGCATTCCCGAACTTCGAAGGGTGCTTCTTTGGT
ACGTCAGGTTGACTTTGACTCGACACCCTCCCTCTTCATGCTTCTTTTTC
TGTCCTCCTTATCCATCGCATCACAGCAACTTGCTCCACCTTCCCTCTTC
TCCACACTCACAGGGTTAAGCCACAGCCTAAATGTCCATTGCGGCCGCCG
TTACTCCTCACTGTCGCCGTCCTTTTCTTTTCACCGCCACCCGCGCCATC
ACTCGCATCACCAATTCTCGCACCATGTCGTCCTCCACCACCACCTCGCA
AATGGAACGCTACGCTTTCCTCGCCGAGTTAGGCATCTCTCAAACGATTC
CTCAAAAGGGCGTCTGTGATGGCCACACGTGGTACGGCTCCGGGCCGCAG
CACCAGCAGATTAATCCCGCCACTGGCGAAGTAATAGGGACTGTGCAGTT
TGGCACCAGCAAAGATTACCATAAAGCCGTCTCAGCCATGCTAGCCATAA
AGGACAAGTGGGCTCTAACTCCCGCCCCCATCCGCGGCGAGGTGGTGCGT
CAGATCGGGCAGCGTCTTCGGGAGAAGCAGCAAGCCTTGGGTGCCTTAGT
CAGTGCGGAAATGGGTAAAATCCTCGCGGAAGGCGTAGGTGAAGTGCAGG
AGGCCATCGACATTTGTGATTTTGCCGTAGGGTTGAGTCGATCTTTGAAT
GGGTCTGTCATTCCTTCGGAGAGACCTGGACACTTCATGATGGAGCGCTA
CAACCCTCTGCATGGGTGCGTGGGCATCGTTTCTGCTTTCAATTTTCCTT
GTGCCGTATACTTTTGGAACGTCGCCATCAGCCTTATTTGTGGCAATGTC
AACCTGTGGAAGCCCGCGGAGACGACATCATTGGTGGCTGTTGCCTTAGT
GAAGGTAATCCAGGACGTGTTGAAGGAAGGAGGGCATGACCCCGCCATTG
CGACCTTGGTGTGTGGCACGGGCAAGGAGGTGGGGGAGGTACTGGTCCAA
GACCAGAGAATTGAGCTGGTAAGTTTCACGGGCAGCACCGCAGTAGGGAG
GTATGTGAATCAGGTAGTGGCGGGAAGGTTCGGCAAGGCACTTTTGGAAC
TAGGAGGAAACAATGGGATGATTATTGACAAGGATGCGGATTTGGATTTA
GCTGTTCGGGCAACGCTCTTTGGGGCTGTAGGGACGGCGGGGCAACGCTG
CACGAGCTTGCGGCGATTGTTTGTGCATGAGGCGGTGTATGAGGAGGTGG
TGGGGAGGGTGGGACGTGCGTACGCCTCGGTGAAGATTGGGGATCCATTG
GACCGAGGTACTTTATGTGGACCAGTGCACACAGCCGCGGCCGTGGAAAA
GTTTTTGAGTACAGTAGCCGAGGCCAAGAAAGAGGGGGGGAGGGTGTTGG
TGGGGGGGAAGGTGTGGGAGGGAAAGGGGTTGTTAAAAGGTGGGAATTTC
GTGGAACCGACCGTGATTGAGATGCCGGCGTCGGCATCCGTGTTGGAGGA
GGAGGCGTTCATCCCCGTGATGTATGTGGTGAAGATAGCGAGTTTGGAAG
AGGGCATTCGGATGAACAACGAAGTGAAGCAGGGCTTGTCCTCGGCCTTG
TTCACTTCCTCGCCCTCGAGCGTGTTCGAGTGGACGGGCCCGGGGGGGTC
GGATTGTGGTATTGTGAATGTGAACATAGGCACAAGTGGCGCGGAGATCG
GGGGGGCGTTCGGGGGGAACAAGGAGACGGGATGGGGGAGGGAGAGTGGG
TCTGACGCCTGGAAGCAGTACATGCGTCGGTCGACGTGCACGATTAATCA
CAGTAAGGAACTCCCCTTGGCCCAGGGGATTGAGTTCGGGGGGAATGGAA
CAGGGGAGGGGAAGACCATGGACTGAGGGGGGTAGAGGGAGGTGAATGCG
GTTTGGAAAAGAAAAAGAAGAGAAAGAAGGGGAGGAAATAGGAGAAGAAA
CGGAAGGAGAAGAAAGAAAAGATGAGGAAATAGAAGAAACAGATGATCAA
CCCGGATAAGCGTGGATAAAGCAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAAAGAGGGGGGG
CTTAAGAAAAGCAAGGAAAAGAGGAGA

Coding sequence (CDS) from alignment at scaffold_13:577863..580239-

>mRNA_5503 ID=mRNA_5503|Name=jgi.p|Nanoce1779_2|592757|organism=Nannochloropsis oceanica|type=CDS|length=1695bp|location=Sequence derived from alignment at scaffold_13:577863..580239- (Nannochloropsis oceanica)
ATGTCCATTGCGGCCGCCGTTACTCCTCACTGTCGCCGTCCTTTTCTTTT
CACCGCCACCCGCGCCATCACTCGCATCACCAATTCTCGCACCATGTCGT
CCTCCACCACCACCTCGCAAATGGAACGCTACGCTTTCCTCGCCGAGTTA
GGCATCTCTCAAACGATTCCTCAAAAGGGCGTCTGTGATGGCCACACGTG
GTACGGCTCCGGGCCGCAGCACCAGCAGATTAATCCCGCCACTGGCGAAG
TAATAGGGACTGTGCAGTTTGGCACCAGCAAAGATTACCATAAAGCCGTC
TCAGCCATGCTAGCCATAAAGGACAAGTGGGCTCTAACTCCCGCCCCCAT
CCGCGGCGAGGTGGTGCGTCAGATCGGGCAGCGTCTTCGGGAGAAGCAGC
AAGCCTTGGGTGCCTTAGTCAGTGCGGAAATGGGTAAAATCCTCGCGGAA
GGCGTAGGTGAAGTGCAGGAGGCCATCGACATTTGTGATTTTGCCGTAGG
GTTGAGTCGATCTTTGAATGGGTCTGTCATTCCTTCGGAGAGACCTGGAC
ACTTCATGATGGAGCGCTACAACCCTCTGCATGGGTGCGTGGGCATCGTT
TCTGCTTTCAATTTTCCTTGTGCCGTATACTTTTGGAACGTCGCCATCAG
CCTTATTTGTGGCAATGTCAACCTGTGGAAGCCCGCGGAGACGACATCAT
TGGTGGCTGTTGCCTTAGTGAAGGTAATCCAGGACGTGTTGAAGGAAGGA
GGGCATGACCCCGCCATTGCGACCTTGGTGTGTGGCACGGGCAAGGAGGT
GGGGGAGGTACTGGTCCAAGACCAGAGAATTGAGCTGGTAAGTTTCACGG
GCAGCACCGCAGTAGGGAGGTATGTGAATCAGGTAGTGGCGGGAAGGTTC
GGCAAGGCACTTTTGGAACTAGGAGGAAACAATGGGATGATTATTGACAA
GGATGCGGATTTGGATTTAGCTGTTCGGGCAACGCTCTTTGGGGCTGTAG
GGACGGCGGGGCAACGCTGCACGAGCTTGCGGCGATTGTTTGTGCATGAG
GCGGTGTATGAGGAGGTGGTGGGGAGGGTGGGACGTGCGTACGCCTCGGT
GAAGATTGGGGATCCATTGGACCGAGGTACTTTATGTGGACCAGTGCACA
CAGCCGCGGCCGTGGAAAAGTTTTTGAGTACAGTAGCCGAGGCCAAGAAA
GAGGGGGGGAGGGTGTTGGTGGGGGGGAAGGTGTGGGAGGGAAAGGGGTT
GTTAAAAGGTGGGAATTTCGTGGAACCGACCGTGATTGAGATGCCGGCGT
CGGCATCCGTGTTGGAGGAGGAGGCGTTCATCCCCGTGATGTATGTGGTG
AAGATAGCGAGTTTGGAAGAGGGCATTCGGATGAACAACGAAGTGAAGCA
GGGCTTGTCCTCGGCCTTGTTCACTTCCTCGCCCTCGAGCGTGTTCGAGT
GGACGGGCCCGGGGGGGTCGGATTGTGGTATTGTGAATGTGAACATAGGC
ACAAGTGGCGCGGAGATCGGGGGGGCGTTCGGGGGGAACAAGGAGACGGG
ATGGGGGAGGGAGAGTGGGTCTGACGCCTGGAAGCAGTACATGCGTCGGT
CGACGTGCACGATTAATCACAGTAAGGAACTCCCCTTGGCCCAGGGGATT
GAGTTCGGGGGGAATGGAACAGGGGAGGGGAAGACCATGGACTGA

Synonyms

Publications